mRNA_M-pyrifera_M_contig97140.22378.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97140.22378.1
Unique NamemRNA_M-pyrifera_M_contig97140.22378.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97140.22378.1 vs. uniprot
Match: A0A2D6LIT7_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A2D6LIT7_9ARCH)

HSP 1 Score: 65.5 bits (158), Expect = 2.270e-10
Identity = 38/120 (31.67%), Postives = 65/120 (54.17%), Query Frame = 1
Query:   25 VLGTQHMSGASVGLIGRSMEALAPDVVAVELDNGRAHFLEPEVVPLDRHARRMVVLGPRKLLWLGGSQFWSRVLATVAGRSVGADMRCAMQLAWRRQSALALLDRELSVTVARLQLDGPW 384
            ++GT H++  S+  +   ++   PD+VA+ELDN RAH L           + + V+G +  L+L  + F  + L  V G   G++M+ A++ A +  S +AL+DR + VT+ RL     W
Sbjct:    8 MIGTSHIARESMDAVATHIKTKKPDIVALELDNRRAHALMHNAKS-KLSLKLIKVVGVKGFLFLVIASFLQKKLGKVVGVDPGSEMKTALKAAMKENSKIALIDRNIEVTMRRLSQTLSW 126          
BLAST of mRNA_M-pyrifera_M_contig97140.22378.1 vs. uniprot
Match: A0A2D6R970_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A2D6R970_9ARCH)

HSP 1 Score: 60.5 bits (145), Expect = 1.840e-8
Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   25 VLGTQHMSGASVGLIGRSMEALAPDVVAVELDNGRAH-FLEPEVVPLDRHARRMVVLGPRKLLWLGGSQFWSRVLATVAGRSVGADMRCAMQLAWRRQSALALLDRELSVTVARLQLDGPW 384
            +LGT H+S  SV  I   +E+   D++AVELD GRAH  L  +   +   A  +  +G +  +++   QF  + L  + G + G DM+ AMQLA +++  +AL+D+ + +T+     +  W
Sbjct:    6 LLGTSHISQESVKEITTKIESGRYDIIAVELDKGRAHALLSEQQNKIGLSA--IFKIGLKGYIFVKIGQFVQQKLGKLVGVAPGCDMKIAMQLAAQKKLQIALIDQPIQITLKNFSKELTW 124          
BLAST of mRNA_M-pyrifera_M_contig97140.22378.1 vs. uniprot
Match: UPI000DF78794 (TraB/GumN family protein n=2 Tax=Saliphagus TaxID=2039236 RepID=UPI000DF78794)

HSP 1 Score: 60.5 bits (145), Expect = 4.120e-8
Identity = 49/126 (38.89%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    1 KADGGTVVVLGTQHMSGASVGLIGRSMEALAPDVVAVELDNGRAHFLEPEVVPLDRHARRMVVLGPRKLLWLGGSQFW--SRVLATVAGR---SVGADMRCAMQLAWRRQSALALLDRELSVTVAR 363
            +A+ G V VLGT H+S ASV  +  +++   PDVVAVELD GR   L+    P D  AR ++  G     +L    +W  S V + +  R     GADMR A++ A R  + +AL+DR++ VT+ R
Sbjct:   19 EAEQGEVTVLGTAHVSHASVEDVHETVDRERPDVVAVELDEGRYRQLQGGA-PEDIEARDLLS-GNTVFQFLA---YWMLSYVQSRLGERFDIEPGADMRAAIEAAGRTGAGVALVDRDIQVTMQR 139          
BLAST of mRNA_M-pyrifera_M_contig97140.22378.1 vs. uniprot
Match: A0A1N7EHQ5_9EURY (TraB family protein n=2 Tax=Natronorubrum TaxID=134813 RepID=A0A1N7EHQ5_9EURY)

HSP 1 Score: 59.7 bits (143), Expect = 7.660e-8
Identity = 46/126 (36.51%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    7 DGGTVVVLGTQHMSGASVGLIGRSMEALAPDVVAVELDNGRAHFLEPEVVPLDRHARRMVVLGPRKLLWLGGSQFWSRVLATVAGR-------SVGADMRCAMQLAWRRQSALALLDRELSVTVAR 363
            D G++ VLGT H+S ASV  +  +++   PDVVAVELD GR   ++    P D  A+ ++  G     +L    +W  +L+ V  R         G+DMR A++ A R +S +AL+DR++ VT+ R
Sbjct:   18 DQGSIHVLGTAHVSQASVDDVHETIDREDPDVVAVELDEGRYRQMQGGT-PEDIEAKDLLS-GNTVFQFLA---YW--MLSYVQSRLGEKFDIEPGSDMRAAIEAAERNESGVALVDRDIQVTIQR 136          
BLAST of mRNA_M-pyrifera_M_contig97140.22378.1 vs. uniprot
Match: L9WSM7_9EURY (TraB determinant protein n=2 Tax=Natronorubrum bangense TaxID=61858 RepID=L9WSM7_9EURY)

HSP 1 Score: 59.7 bits (143), Expect = 7.660e-8
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = 1
Query:   13 GTVVVLGTQHMSGASVGLIGRSMEALAPDVVAVELDNGRAHFLEPEVVPLDRHARRMVVLGPRKLLWLGGSQFW--SRVLATVAGR---SVGADMRCAMQLAWRRQSALALLDRELSVTVAR 363
            G+V VLGT H+S ASV  +  +++   PDVVAVELD GR   ++    P D  A+ ++  G     +L    +W  S V + +  R     GADMR A++ A R +S +AL+DR++ VT+ R
Sbjct:   21 GSVHVLGTAHVSQASVDDVHETIDREDPDVVAVELDEGRYRQMQGGT-PDDIEAKDLLS-GNTVFQFLA---YWMLSYVQSRLGERFDIEPGADMRAAIEAAERNESGVALVDRDIQVTIQR 137          
BLAST of mRNA_M-pyrifera_M_contig97140.22378.1 vs. uniprot
Match: A0A0B5HTE5_ARCG3 (Pheromone shutdown-related protein TraB n=2 Tax=Archaea TaxID=2157 RepID=A0A0B5HTE5_ARCG3)

HSP 1 Score: 58.5 bits (140), Expect = 8.630e-8
Identity = 36/121 (29.75%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   19 VVVLGTQHMSGASVGLIGRSMEALAPDVVAVELDNGRAHFLEPEVVPLDRHARRMVVLGPRKLLWLGG------SQFWSRVLATVAGRSVGADMRCAMQLAWRRQSALALLDRELSVTVAR 363
            + ++GT H++G S   +  +   ++PD+VAVELD  R + L+ +V       RR   L   K   LGG       +F  + +  +     G++M  A++LA + ++ +AL+DR++S+T+ R
Sbjct:    7 IALVGTSHVAGESTRRVNAAFGEISPDIVAVELDRNRLYALKNKV-------RRPKNLELIKAFGLGGFIFYVIGEFVQKKIGKIVNIEPGSEMLAALKLAEKSKADIALIDRDISITMKR 120          
BLAST of mRNA_M-pyrifera_M_contig97140.22378.1 vs. uniprot
Match: L0AKH9_NATGS (Conjugal transfer protein TraB n=2 Tax=Natronobacterium gregoryi TaxID=44930 RepID=L0AKH9_NATGS)

HSP 1 Score: 59.3 bits (142), Expect = 1.040e-7
Identity = 47/126 (37.30%), Postives = 69/126 (54.76%), Query Frame = 1
Query:    7 DGGTVVVLGTQHMSGASVGLIGRSMEALAPDVVAVELDNGRAHFLEPEVVPLDRHARRMVVLGPRKLLWLGGSQFWSRVLATVAGR-------SVGADMRCAMQLAWRRQSALALLDRELSVTVAR 363
            D G+V VLGT H+S ASV  +  +++   PDVVAVELD GR   ++    P D  A+ ++  G     +L    +W  +L+ V  R         GADM+ A+  A R  S +AL+DR++ VT+ R
Sbjct:   21 DSGSVDVLGTAHVSQASVDEVHETVDEKRPDVVAVELDEGRYRQMQGGT-PDDLEAKDLLS-GNTVFQFLA---YW--MLSYVQSRLGDQFDVEPGADMQAAIDAAERNGSGVALVDRDIQVTIQR 139          
BLAST of mRNA_M-pyrifera_M_contig97140.22378.1 vs. uniprot
Match: UPI0006778D17 (TraB/GumN family protein n=1 Tax=Halopiger djelfimassiliensis TaxID=1293047 RepID=UPI0006778D17)

HSP 1 Score: 58.9 bits (141), Expect = 1.420e-7
Identity = 47/128 (36.72%), Postives = 71/128 (55.47%), Query Frame = 1
Query:    1 KADGGTVVVLGTQHMSGASVGLIGRSMEALAPDVVAVELDNGRAHFLEPEVVPLDRHARRMVVLGPRKLLWLGGSQFWSRVLATVAGR-------SVGADMRCAMQLAWRRQSALALLDRELSVTVAR 363
            + D G+V VLGT H+S ASV  +  +++   PDVVAVELD GR   ++    P D  A+ ++  G     +L    +W  +L+ V  R         GADMR A++ A R  S ++L+DR++ VT+ R
Sbjct:   17 ETDHGSVHVLGTAHVSQASVDDVHETIDREEPDVVAVELDEGRYRQMQGGT-PDDIEAKDLLS-GNTVFQFLA---YW--MLSYVQSRLGEKFDIEPGADMRAAIEAAERNGSGVSLVDRDIQVTIQR 137          
BLAST of mRNA_M-pyrifera_M_contig97140.22378.1 vs. uniprot
Match: F8D7C7_HALXS (TraB determinant protein n=2 Tax=Halopiger TaxID=387342 RepID=F8D7C7_HALXS)

HSP 1 Score: 58.9 bits (141), Expect = 1.420e-7
Identity = 47/128 (36.72%), Postives = 69/128 (53.91%), Query Frame = 1
Query:    1 KADGGTVVVLGTQHMSGASVGLIGRSMEALAPDVVAVELDNGRAHFLEPEVVPLDRHARRMVVLGPRKLLWLGGSQFWSRVLATVAGR-------SVGADMRCAMQLAWRRQSALALLDRELSVTVAR 363
            K D G+V VLGT H+S ASV  +  +++   PDVVAVELD GR   ++    P D  A+ ++  G     +L    +W  +L+ V  R         GADM+  +  A R  S +AL+DR++ VT+ R
Sbjct:   18 KDDEGSVTVLGTAHVSQASVDDVHEAVDRERPDVVAVELDEGRYRQMQGGT-PDDLEAKDLLS-GNTVFQFLA---YW--MLSYVQSRLGDQFDIEPGADMKAGIDAAERNGSGVALVDRDIQVTIQR 138          
BLAST of mRNA_M-pyrifera_M_contig97140.22378.1 vs. uniprot
Match: A0A2Z2HNA2_9EURY (Conjugal transfer protein TraB n=1 Tax=Natrarchaeobaculum aegyptiacum TaxID=745377 RepID=A0A2Z2HNA2_9EURY)

HSP 1 Score: 58.9 bits (141), Expect = 1.420e-7
Identity = 47/122 (38.52%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   13 GTVVVLGTQHMSGASVGLIGRSMEALAPDVVAVELDNGRAHFLEPEVVPLDRHARRMVVLGPRKLLWLGGSQFW--SRVLATVAGR---SVGADMRCAMQLAWRRQSALALLDRELSVTVAR 363
            G+V VLGT H+S ASV  +  +++   PDVVAVELD GR   ++    P D  A+ ++  G     +L    +W  S V + +  R     GADMR A+  A R  S +AL+DR++ VT+ R
Sbjct:   21 GSVQVLGTAHVSQASVDEVHETVDREQPDVVAVELDEGRFRQMQGGT-PDDIEAKDLLS-GNTVFQFLA---YWMLSYVQSRLGDRFDIEPGADMRAAIDAAERNGSGVALVDRDIQVTIQR 137          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97140.22378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6LIT7_9ARCH2.270e-1031.67Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A2D6R970_9ARCH1.840e-832.23Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
UPI000DF787944.120e-838.89TraB/GumN family protein n=2 Tax=Saliphagus TaxID=... [more]
A0A1N7EHQ5_9EURY7.660e-836.51TraB family protein n=2 Tax=Natronorubrum TaxID=13... [more]
L9WSM7_9EURY7.660e-838.52TraB determinant protein n=2 Tax=Natronorubrum ban... [more]
A0A0B5HTE5_ARCG38.630e-829.75Pheromone shutdown-related protein TraB n=2 Tax=Ar... [more]
L0AKH9_NATGS1.040e-737.30Conjugal transfer protein TraB n=2 Tax=Natronobact... [more]
UPI0006778D171.420e-736.72TraB/GumN family protein n=1 Tax=Halopiger djelfim... [more]
F8D7C7_HALXS1.420e-736.72TraB determinant protein n=2 Tax=Halopiger TaxID=3... [more]
A0A2Z2HNA2_9EURY1.420e-738.52Conjugal transfer protein TraB n=1 Tax=Natrarchaeo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97140contigM-pyrifera_M_contig97140:157..540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArchaea
Seed ortholog score60.8
Seed ortholog evalue5.2e-07
Seed eggNOG ortholog1227500.C494_01632
Preferred nametraB
Hectar predicted targeting categoryother localisation
EggNOG free text desc.homolog of PrgY (pheromone shutdown protein)
EggNOG OGs23TPC@183963,2XTNE@28890,COG1916@1,arCOG02142@2157
COG Functional cat.S
Best tax levelHalobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.0941029-CDS-M-pyrifera_M_contig97140:156..5401622816888.0941029-CDS-M-pyrifera_M_contig97140:156..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97140 157..540 -
1692278237.5951052-CDS-M-pyrifera_M_contig97140:156..5401692278237.5951052-CDS-M-pyrifera_M_contig97140:156..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97140 157..540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97140.22378.1prot_M-pyrifera_M_contig97140.22378.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97140 157..540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97140.22378.1

>prot_M-pyrifera_M_contig97140.22378.1 ID=prot_M-pyrifera_M_contig97140.22378.1|Name=mRNA_M-pyrifera_M_contig97140.22378.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
KADGGTVVVLGTQHMSGASVGLIGRSMEALAPDVVAVELDNGRAHFLEPE
VVPLDRHARRMVVLGPRKLLWLGGSQFWSRVLATVAGRSVGADMRCAMQL
AWRRQSALALLDRELSVTVARLQLDGPW
back to top

mRNA from alignment at M-pyrifera_M_contig97140:157..540-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97140.22378.1 ID=mRNA_M-pyrifera_M_contig97140.22378.1|Name=mRNA_M-pyrifera_M_contig97140.22378.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig97140:157..540- (Macrocystis pyrifera P11B4 male)
AAGGCGGATGGCGGTACGGTGGTGGTGTTGGGCACGCAGCACATGTCGGG TGCGTCGGTGGGTCTGATCGGGCGGAGCATGGAGGCGCTGGCCCCTGACG TGGTTGCGGTGGAGCTGGACAACGGTCGCGCGCACTTTTTGGAGCCGGAA GTGGTGCCTCTGGACAGGCATGCGCGGCGGATGGTGGTGCTGGGTCCGCG GAAGCTGCTGTGGCTGGGAGGGAGCCAGTTCTGGAGCAGGGTGCTCGCCA CGGTGGCCGGAAGGAGCGTCGGCGCGGACATGCGCTGCGCCATGCAGCTC GCCTGGCGCAGACAGAGCGCGCTGGCTCTCTTGGACCGGGAGCTGTCGGT GACGGTGGCGCGGCTGCAGCTGGACGGGCCGTGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig97140:157..540-

>mRNA_M-pyrifera_M_contig97140.22378.1 ID=mRNA_M-pyrifera_M_contig97140.22378.1|Name=mRNA_M-pyrifera_M_contig97140.22378.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig97140:157..540- (Macrocystis pyrifera P11B4 male)
AAGGCGGATGGCGGTACGGTGGTGGTGTTGGGCACGCAGCACATGTCGGG
TGCGTCGGTGGGTCTGATCGGGCGGAGCATGGAGGCGCTGGCCCCTGACG
TGGTTGCGGTGGAGCTGGACAACGGTCGCGCGCACTTTTTGGAGCCGGAA
GTGGTGCCTCTGGACAGGCATGCGCGGCGGATGGTGGTGCTGGGTCCGCG
GAAGCTGCTGTGGCTGGGAGGGAGCCAGTTCTGGAGCAGGGTGCTCGCCA
CGGTGGCCGGAAGGAGCGTCGGCGCGGACATGCGCTGCGCCATGCAGCTC
GCCTGGCGCAGACAGAGCGCGCTGGCTCTCTTGGACCGGGAGCTGTCGGT
GACGGTGGCGCGGCTGCAGCTGGACGGGCCGTGGAAGGCGGATGGCGGTA
CGGTGGTGGTGTTGGGCACGCAGCACATGTCGGGTGCGTCGGTGGGTCTG
ATCGGGCGGAGCATGGAGGCGCTGGCCCCTGACGTGGTTGCGGTGGAGCT
GGACAACGGTCGCGCGCACTTTTTGGAGCCGGAAGTGGTGCCTCTGGACA
GGCATGCGCGGCGGATGGTGGTGCTGGGTCCGCGGAAGCTGCTGTGGCTG
GGAGGGAGCCAGTTCTGGAGCAGGGTGCTCGCCACGGTGGCCGGAAGGAG
CGTCGGCGCGGACATGCGCTGCGCCATGCAGCTCGCCTGGCGCAGACAGA
GCGCGCTGGCTCTCTTGGACCGGGAGCTGTCGGTGACGGTGGCGCGGCTG
CAGCTGGACGGGCCGTGG
back to top