mRNA_M-pyrifera_M_contig96653.22257.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: UPI000A2A645D (probable RNA-binding protein 18 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A645D) HSP 1 Score: 93.2 bits (230), Expect = 9.250e-22 Identity = 41/91 (45.05%), Postives = 68/91 (74.73%), Query Frame = 1 Query: 1 SVVAHRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQESET 273 +++ HR+++GN+DKR++EY ++++ + FG I ++ + T+GP KG P GYCFVE+ +R EA A++GLNGK+ RAL V +A+E +S+T Sbjct: 16 NIIQHRLWVGNIDKRLSEYNLLKILQKFGEIKYFEYLFHTSGPLKGEPRGYCFVEYXTREEALKALQGLNGKMALSRALAVHWAKEDQSKT 106
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A6P8IAM5_ACTTE (Probable RNA-binding protein 18 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IAM5_ACTTE) HSP 1 Score: 90.5 bits (223), Expect = 1.010e-20 Identity = 38/86 (44.19%), Postives = 65/86 (75.58%), Query Frame = 1 Query: 7 VAHRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQE 264 V+HR+++GN+DKR++EY ++++ + FG + Q ++ + T+GPHKG P GYCFV++ S++EA A++ LNGK+ RAL V +A + + Sbjct: 20 VSHRLWMGNIDKRLSEYNLLKIVQRFGQVKQFEYLFHTSGPHKGEPRGYCFVQYESKQEATKAMKALNGKMALSRALVVRWANDDQ 105
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A6I9R801_ELAGV (probable RNA-binding protein 18 isoform X1 n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9R801_ELAGV) HSP 1 Score: 88.6 bits (218), Expect = 2.380e-20 Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 1 Query: 16 RIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 261 R++IGN+D+R+TE V+++ PFG IV E F W T GP +G P GY F+++S++ EA+ A +NGK+ GR L V FA E+ Sbjct: 15 RLYIGNLDQRITEANVIKMFSPFGKIVSEDFLWHTRGPKRGEPRGYAFIQYSTKEEAQLAKAKMNGKLACGRPLVVRFASER 96
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: UPI00109F2394 (probable RNA-binding protein 18 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI00109F2394) HSP 1 Score: 88.6 bits (218), Expect = 2.690e-20 Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 1 Query: 16 RIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 261 R+++GN+D+R+TE V+++ PFG I+ E F W T GP KG P GY F+++SS+ EA+ A +NG++ GR L V FA E+ Sbjct: 9 RLYVGNLDQRITEANVIKIFSPFGKIISEDFLWHTRGPKKGEPRGYVFIQYSSKEEAQLAKTEMNGRLAYGRPLVVRFASEK 90
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A9NM68_PICSI (RRM domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NM68_PICSI) HSP 1 Score: 89.0 bits (219), Expect = 3.430e-20 Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1 Query: 13 HRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFARE 258 +R+++GN+D R+TEYQV+++ PFG I E+F W GP KG P G+ F+EFS R EAE A +NG+ GR L V F E Sbjct: 25 NRLYVGNLDHRITEYQVIKMFSPFGKICFEEFMWHRHGPRKGEPRGFAFIEFSKREEAEKAKESMNGRFALGRPLVVRFVDE 106
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A176VG38_MARPO (RRM domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VG38_MARPO) HSP 1 Score: 88.2 bits (217), Expect = 5.970e-20 Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1 Query: 13 HRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 261 H+++IGN+D RVTEY V++L PFG I E++ W T GP +G P G+ FVE+S R +AE A +NG++ GR L V F E+ Sbjct: 20 HKLYIGNLDHRVTEYHVIKLFSPFGKIRCEEYMWHTHGPKRGEPRGFAFVEYSKREDAERAKASMNGRLAFGRPLVVRFVDEK 102
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A7J7MRT9_9MAGN (RRM domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MRT9_9MAGN) HSP 1 Score: 86.3 bits (212), Expect = 1.910e-19 Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 1 Query: 16 RIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 261 R++IGN+D R+TE ++++ PFG IV E F W T GP +G P G+ F++FS++ EAE A +NGK+ GR L V F+ E+ Sbjct: 14 RLYIGNLDHRITEEVLIKMFSPFGKIVSEDFLWHTRGPKRGQPRGFAFIQFSNKEEAEVAKEKMNGKLACGRPLIVRFSSEK 95
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A5P1E1V7_ASPOF (RRM domain-containing protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1E1V7_ASPOF) HSP 1 Score: 86.3 bits (212), Expect = 2.480e-19 Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 1 Query: 16 RIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 261 R+++GN+D R+TE V+++ PFG IV E F W T GP +G P GY F+E+S++ EA+ A +NG++ GR L V FA E+ Sbjct: 15 RLYVGNLDHRITEAHVLRVFSPFGKIVSEDFLWHTRGPKRGEPRGYAFIEYSTKEEAQLAKTKMNGRLACGRPLVVRFASEK 96
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A0D2VPW0_CAPO3 (RRM domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VPW0_CAPO3) HSP 1 Score: 86.7 bits (213), Expect = 2.480e-19 Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 1 Query: 7 VAHRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQESE 270 +++R+FIGN+D R+TEY ++Q+ + + + F W AGP +G P YCFVEF++ A AV LNGK+ GRALRV+ A+E+ + Sbjct: 1 MSYRLFIGNLDARLTEYHLLQMLQRYEGFTKLHFLWHAAGPKRGEPRDYCFVEFATAETANRAVEQLNGKLALGRALRVSIAKEKAED 88
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: UPI0009E565DD (probable RNA-binding protein 18 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E565DD) HSP 1 Score: 85.9 bits (211), Expect = 2.900e-19 Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 1 Query: 16 RIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 261 ++++GN+D+R+TE V+++ PFG I+ E F W T GP KG P GY F+++ S+ EA+ A +NGK+ GR L V +A E+ Sbjct: 9 KLYVGNLDQRITEANVIKMFSPFGKIISEDFLWHTRGPKKGEPRGYAFIQYGSKEEAQLAKTEMNGKLAYGRPLVVRYADEK 90 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig96653.22257.1 >prot_M-pyrifera_M_contig96653.22257.1 ID=prot_M-pyrifera_M_contig96653.22257.1|Name=mRNA_M-pyrifera_M_contig96653.22257.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp SVVAHRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGback to top mRNA from alignment at M-pyrifera_M_contig96653:97..701+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig96653.22257.1 ID=mRNA_M-pyrifera_M_contig96653.22257.1|Name=mRNA_M-pyrifera_M_contig96653.22257.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=605bp|location=Sequence derived from alignment at M-pyrifera_M_contig96653:97..701+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig96653:97..701+ >mRNA_M-pyrifera_M_contig96653.22257.1 ID=mRNA_M-pyrifera_M_contig96653.22257.1|Name=mRNA_M-pyrifera_M_contig96653.22257.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig96653:97..701+ (Macrocystis pyrifera P11B4 male)back to top |