mRNA_M-pyrifera_M_contig96653.22257.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96653.22257.1
Unique NamemRNA_M-pyrifera_M_contig96653.22257.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: UPI000A2A645D (probable RNA-binding protein 18 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A645D)

HSP 1 Score: 93.2 bits (230), Expect = 9.250e-22
Identity = 41/91 (45.05%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    1 SVVAHRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQESET 273
            +++ HR+++GN+DKR++EY ++++ + FG I   ++ + T+GP KG P GYCFVE+ +R EA  A++GLNGK+   RAL V +A+E +S+T
Sbjct:   16 NIIQHRLWVGNIDKRLSEYNLLKILQKFGEIKYFEYLFHTSGPLKGEPRGYCFVEYXTREEALKALQGLNGKMALSRALAVHWAKEDQSKT 106          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A6P8IAM5_ACTTE (Probable RNA-binding protein 18 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IAM5_ACTTE)

HSP 1 Score: 90.5 bits (223), Expect = 1.010e-20
Identity = 38/86 (44.19%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    7 VAHRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQE 264
            V+HR+++GN+DKR++EY ++++ + FG + Q ++ + T+GPHKG P GYCFV++ S++EA  A++ LNGK+   RAL V +A + +
Sbjct:   20 VSHRLWMGNIDKRLSEYNLLKIVQRFGQVKQFEYLFHTSGPHKGEPRGYCFVQYESKQEATKAMKALNGKMALSRALVVRWANDDQ 105          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A6I9R801_ELAGV (probable RNA-binding protein 18 isoform X1 n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9R801_ELAGV)

HSP 1 Score: 88.6 bits (218), Expect = 2.380e-20
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 1
Query:   16 RIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 261
            R++IGN+D+R+TE  V+++  PFG IV E F W T GP +G P GY F+++S++ EA+ A   +NGK+  GR L V FA E+
Sbjct:   15 RLYIGNLDQRITEANVIKMFSPFGKIVSEDFLWHTRGPKRGEPRGYAFIQYSTKEEAQLAKAKMNGKLACGRPLVVRFASER 96          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: UPI00109F2394 (probable RNA-binding protein 18 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI00109F2394)

HSP 1 Score: 88.6 bits (218), Expect = 2.690e-20
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 1
Query:   16 RIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 261
            R+++GN+D+R+TE  V+++  PFG I+ E F W T GP KG P GY F+++SS+ EA+ A   +NG++  GR L V FA E+
Sbjct:    9 RLYVGNLDQRITEANVIKIFSPFGKIISEDFLWHTRGPKKGEPRGYVFIQYSSKEEAQLAKTEMNGRLAYGRPLVVRFASEK 90          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A9NM68_PICSI (RRM domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NM68_PICSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.430e-20
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   13 HRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFARE 258
            +R+++GN+D R+TEYQV+++  PFG I  E+F W   GP KG P G+ F+EFS R EAE A   +NG+   GR L V F  E
Sbjct:   25 NRLYVGNLDHRITEYQVIKMFSPFGKICFEEFMWHRHGPRKGEPRGFAFIEFSKREEAEKAKESMNGRFALGRPLVVRFVDE 106          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A176VG38_MARPO (RRM domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VG38_MARPO)

HSP 1 Score: 88.2 bits (217), Expect = 5.970e-20
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   13 HRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 261
            H+++IGN+D RVTEY V++L  PFG I  E++ W T GP +G P G+ FVE+S R +AE A   +NG++  GR L V F  E+
Sbjct:   20 HKLYIGNLDHRVTEYHVIKLFSPFGKIRCEEYMWHTHGPKRGEPRGFAFVEYSKREDAERAKASMNGRLAFGRPLVVRFVDEK 102          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A7J7MRT9_9MAGN (RRM domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MRT9_9MAGN)

HSP 1 Score: 86.3 bits (212), Expect = 1.910e-19
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   16 RIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 261
            R++IGN+D R+TE  ++++  PFG IV E F W T GP +G P G+ F++FS++ EAE A   +NGK+  GR L V F+ E+
Sbjct:   14 RLYIGNLDHRITEEVLIKMFSPFGKIVSEDFLWHTRGPKRGQPRGFAFIQFSNKEEAEVAKEKMNGKLACGRPLIVRFSSEK 95          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A5P1E1V7_ASPOF (RRM domain-containing protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1E1V7_ASPOF)

HSP 1 Score: 86.3 bits (212), Expect = 2.480e-19
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   16 RIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 261
            R+++GN+D R+TE  V+++  PFG IV E F W T GP +G P GY F+E+S++ EA+ A   +NG++  GR L V FA E+
Sbjct:   15 RLYVGNLDHRITEAHVLRVFSPFGKIVSEDFLWHTRGPKRGEPRGYAFIEYSTKEEAQLAKTKMNGRLACGRPLVVRFASEK 96          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A0D2VPW0_CAPO3 (RRM domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VPW0_CAPO3)

HSP 1 Score: 86.7 bits (213), Expect = 2.480e-19
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    7 VAHRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQESE 270
            +++R+FIGN+D R+TEY ++Q+ + +    +  F W  AGP +G P  YCFVEF++   A  AV  LNGK+  GRALRV+ A+E+  +
Sbjct:    1 MSYRLFIGNLDARLTEYHLLQMLQRYEGFTKLHFLWHAAGPKRGEPRDYCFVEFATAETANRAVEQLNGKLALGRALRVSIAKEKAED 88          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: UPI0009E565DD (probable RNA-binding protein 18 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E565DD)

HSP 1 Score: 85.9 bits (211), Expect = 2.900e-19
Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   16 RIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 261
            ++++GN+D+R+TE  V+++  PFG I+ E F W T GP KG P GY F+++ S+ EA+ A   +NGK+  GR L V +A E+
Sbjct:    9 KLYVGNLDQRITEANVIKMFSPFGKIISEDFLWHTRGPKKGEPRGYAFIQYGSKEEAQLAKTEMNGKLAYGRPLVVRYADEK 90          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000A2A645D9.250e-2245.05probable RNA-binding protein 18 n=2 Tax=Exaiptasia... [more]
A0A6P8IAM5_ACTTE1.010e-2044.19Probable RNA-binding protein 18 n=1 Tax=Actinia te... [more]
A0A6I9R801_ELAGV2.380e-2047.56probable RNA-binding protein 18 isoform X1 n=3 Tax... [more]
UPI00109F23942.690e-2046.34probable RNA-binding protein 18 n=1 Tax=Dendrobium... [more]
A9NM68_PICSI3.430e-2048.78RRM domain-containing protein n=1 Tax=Picea sitche... [more]
A0A176VG38_MARPO5.970e-2048.19RRM domain-containing protein n=2 Tax=Marchantia p... [more]
A0A7J7MRT9_9MAGN1.910e-1946.34RRM domain-containing protein n=1 Tax=Kingdonia un... [more]
A0A5P1E1V7_ASPOF2.480e-1946.34RRM domain-containing protein n=2 Tax=Asparagus of... [more]
A0A0D2VPW0_CAPO32.480e-1944.32RRM domain-containing protein n=1 Tax=Capsaspora o... [more]
UPI0009E565DD2.900e-1943.90probable RNA-binding protein 18 n=1 Tax=Phalaenops... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96653contigM-pyrifera_M_contig96653:97..701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.3
Seed ortholog evalue2.6e-16
Seed eggNOG ortholog4432.XP_010272836.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA-binding protein
EggNOG OGs29A52@1,2RZNU@2759,37UF9@33090,3GI7I@35493
Ec32 ortholog descriptionRNA recognition motif domain, eukaryote
Ec32 orthologEc-08_004360.1
COG Functional cat.A
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.3568215-CDS-M-pyrifera_M_contig96653:96..1491622816881.3568215-CDS-M-pyrifera_M_contig96653:96..149Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96653 97..149 +
1692278233.6887074-CDS-M-pyrifera_M_contig96653:96..1491692278233.6887074-CDS-M-pyrifera_M_contig96653:96..149Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96653 97..149 +
1622816881.3717616-CDS-M-pyrifera_M_contig96653:481..7011622816881.3717616-CDS-M-pyrifera_M_contig96653:481..701Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96653 482..701 +
1692278233.7112393-CDS-M-pyrifera_M_contig96653:481..7011692278233.7112393-CDS-M-pyrifera_M_contig96653:481..701Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96653 482..701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96653.22257.1prot_M-pyrifera_M_contig96653.22257.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96653 97..701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96653.22257.1

>prot_M-pyrifera_M_contig96653.22257.1 ID=prot_M-pyrifera_M_contig96653.22257.1|Name=mRNA_M-pyrifera_M_contig96653.22257.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
SVVAHRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAG
YCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQESET
back to top

mRNA from alignment at M-pyrifera_M_contig96653:97..701+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96653.22257.1 ID=mRNA_M-pyrifera_M_contig96653.22257.1|Name=mRNA_M-pyrifera_M_contig96653.22257.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=605bp|location=Sequence derived from alignment at M-pyrifera_M_contig96653:97..701+ (Macrocystis pyrifera P11B4 male)
AGCGTTGTCGCCCACCGCATCTTCATCGGTAACATGGACAAGAGAGTCAC CGAGTACGGCATCTCCCTCACATGCCAGGCCTAGAATGCATGGAAGGGCT TGGGAGAGAGAGGAGGGGAGGAGAGAGGGAGAGAGGGAGGGAGAGAGGGA GAGAGGGAGGAAGAGAGCAGGCAACCCATAGCGAGTCTTAGTGAGCGAGT GCGGCGCGAGAGAGCGAGCCAGAGAGATACGCATGTGAGTGATAGTGCGG AATGGGCTGTGATAACGGACAAGTCGAATGCATATGGAATGAGGGAGGCG TCGGATGCGAGGAAAGAGTGAGAGTGAGTGAGTGAGAGTGAGCGAGAGAG AGAGAGAGAAAAGAGATGCTGATGTGGCGTACTAGATACCAGGTAGTGCA GCTGTGCAGGCCGTTCGGCTCGATCGTGCAGGAGCAGTTCTGCTGGACGA CTGCAGGGCCGCACAAGGGCACGCCTGCAGGCTACTGCTTCGTGGAGTTC TCCAGCAGACGCGAGGCAGAAGCAGCGGTGAGGGGACTGAATGGGAAGGT AGTGGGGGGGAGGGCTCTCCGCGTGGCATTCGCACGTGAGCAAGAGAGTG AGACT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig96653:97..701+

>mRNA_M-pyrifera_M_contig96653.22257.1 ID=mRNA_M-pyrifera_M_contig96653.22257.1|Name=mRNA_M-pyrifera_M_contig96653.22257.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig96653:97..701+ (Macrocystis pyrifera P11B4 male)
AGCGTTGTCGCCCACCGCATCTTCATCGGTAACATGGACAAGAGAGTCAC
CGAAGCGTTGTCGCCCACCGCATCTTCATCGGTAACATGGACAAGAGAGT
CACCGAATACCAGGTAGTGCAGCTGTGCAGGCCGTTCGGCTCGATCGTGC
AGGAGCAGTTCTGCTGGACGACTGCAGGGCCGCACAAGGGCACGCCTGCA
GGCTACTGCTTCGTGGAGTTCTCCAGCAGACGCGAGGCAGAAGCAGCGGT
GAGGGGACTGAATGGGAAGGTAGTGGGGGGGAGGGCTCTCCGCGTGGCAT
TCGCACGTGAGCAAGAGAGTGAGACTATACCAGGTAGTGCAGCTGTGCAG
GCCGTTCGGCTCGATCGTGCAGGAGCAGTTCTGCTGGACGACTGCAGGGC
CGCACAAGGGCACGCCTGCAGGCTACTGCTTCGTGGAGTTCTCCAGCAGA
CGCGAGGCAGAAGCAGCGGTGAGGGGACTGAATGGGAAGGTAGTGGGGGG
GAGGGCTCTCCGCGTGGCATTCGCACGTGAGCAAGAGAGTGAGACT
back to top