mRNA_M-pyrifera_M_contig9506.21934.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9506.21934.1
Unique NamemRNA_M-pyrifera_M_contig9506.21934.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9506.21934.1 vs. uniprot
Match: D7G5I9_ECTSI (Zeaxanthin epoxidase, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I9_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.390e-11
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 VSMSPFEVDAPGGINSFMTSLMKPALPLIFYMQFMYLYRY 120
            V++SPF +DAPGGINSFMTS+MKP LPLIF+ QFMYLY +
Sbjct:  477 VTLSPFNMDAPGGINSFMTSVMKPVLPLIFFAQFMYLYSF 516
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9506.21934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5I9_ECTSI2.390e-1175.00Zeaxanthin epoxidase, chloroplast n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9506contigM-pyrifera_M_contig9506:7640..7759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog2880.D7G5I9
Preferred nameZEP
KEGG rclassRC01624,RC03037
KEGG koko:K09838
KEGG ReactionR06946,R06947,R10070
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00372
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG2614@2759
EC1.14.15.21
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size120
Cds size114
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816865.159322-UTR-M-pyrifera_M_contig9506:7639..76451622816865.159322-UTR-M-pyrifera_M_contig9506:7639..7645Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9506 7640..7645 +
1692278223.9341652-UTR-M-pyrifera_M_contig9506:7639..76451692278223.9341652-UTR-M-pyrifera_M_contig9506:7639..7645Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9506 7640..7645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816865.1766775-CDS-M-pyrifera_M_contig9506:7645..77591622816865.1766775-CDS-M-pyrifera_M_contig9506:7645..7759Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9506 7646..7759 +
1692278223.9554968-CDS-M-pyrifera_M_contig9506:7645..77591692278223.9554968-CDS-M-pyrifera_M_contig9506:7645..7759Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9506 7646..7759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9506.21934.1prot_M-pyrifera_M_contig9506.21934.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9506 7646..7759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9506.21934.1

>prot_M-pyrifera_M_contig9506.21934.1 ID=prot_M-pyrifera_M_contig9506.21934.1|Name=mRNA_M-pyrifera_M_contig9506.21934.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
MSPFEVDAPGGINSFMTSLMKPALPLIFYMQFMYLYRY
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mRNA from alignment at M-pyrifera_M_contig9506:7640..7759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9506.21934.1 ID=mRNA_M-pyrifera_M_contig9506.21934.1|Name=mRNA_M-pyrifera_M_contig9506.21934.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=120bp|location=Sequence derived from alignment at M-pyrifera_M_contig9506:7640..7759+ (Macrocystis pyrifera P11B4 male)
GTGTCCATGTCTCCGTTCGAGGTGGACGCCCCCGGCGGCATCAATTCTTT
CATGACCAGCCTCATGAAGCCCGCCCTCCCGTTGATCTTCTACATGCAGT
TCATGTACCTTTACAGGTAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9506:7640..7759+

>mRNA_M-pyrifera_M_contig9506.21934.1 ID=mRNA_M-pyrifera_M_contig9506.21934.1|Name=mRNA_M-pyrifera_M_contig9506.21934.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig9506:7640..7759+ (Macrocystis pyrifera P11B4 male)
ATGTCTCCGTTCGAGGTGGACGCCCCCGGCGGCATCAATTCTTTCATGAC
CAGCCTCATGAAGCCCGCCCTCCCGTTGATCTTCTACATGCAGTTCATGT
ACCTTTACAGGTATATGTCTCCGTTCGAGGTGGACGCCCCCGGCGGCATC
AATTCTTTCATGACCAGCCTCATGAAGCCCGCCCTCCCGTTGATCTTCTA
CATGCAGTTCATGTACCTTTACAGGTAT
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