mRNA_M-pyrifera_M_contig94909.21893.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94909.21893.1
Unique NamemRNA_M-pyrifera_M_contig94909.21893.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94909.21893.1 vs. uniprot
Match: A0A1S3IYI9_LINUN (3'-5' exoribonuclease 1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IYI9_LINUN)

HSP 1 Score: 100 bits (248), Expect = 1.230e-22
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:    1 KYAFATDGPWDFDKFLRPECVRKGIPFPKAMERYVDIRETFAAQYARRPNRFHDRPGPWCYFKVSNALKYLGLEFEGEEHRGIDDTKNIARIAQALVAAGIVLRIN 318
            K+A ATDGPWD  +FL  +C    +PFPK   +++++R+ F   Y+ R              K++  L+YLG+EFEGE+HRGIDD KNIARI   ++  G  LRIN
Sbjct:  207 KFAVATDGPWDMSRFLYQQCHLSNVPFPKWGRKWINVRKAFGNCYSVRQ------------VKLTTMLEYLGMEFEGEQHRGIDDAKNIARILLCMLKDGCELRIN 300
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BLAST of mRNA_M-pyrifera_M_contig94909.21893.1 vs. uniprot
Match: V3ZNW8_LOTGI (Exonuclease domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZNW8_LOTGI)

HSP 1 Score: 96.7 bits (239), Expect = 1.050e-21
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:    1 KYAFATDGPWDFDKFLRPECVRKGIPFPKAMERYVDIRETFAAQYARRPNRFHDRPGPWCYFKVSNALKYLGLEFEGEEHRGIDDTKNIARIAQALVAAGIVLRIN 318
            K+A ATDGPWD  +FL  +C    +PFPK  +++V++R+ FA  Y R                + N L++LGLEFEG +H G+DDT+NIARIAQ L+  G  + +N
Sbjct:  167 KFAVATDGPWDMRRFLFYQCQMLDMPFPKWAKKWVNLRKLFANFYRRERGN------------IENMLRHLGLEFEGRQHCGMDDTRNIARIAQRLIKDGCFIDVN 260
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BLAST of mRNA_M-pyrifera_M_contig94909.21893.1 vs. uniprot
Match: A0A7S2U1I5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U1I5_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 1.720e-21
Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:    1 KYAFATDGPWDFDKFLRPECVRKGIPFPKAMERYVDIRETFAAQYARRPNRFHDRPGPWCYFKVSNALKYLGLEFEGEEHRGIDDTKNIARIAQALVAAGIVLRIN 318
            K+ FATDGPWD  KFL PEC RK IP P+  + + +IR  FA  +       H R G      ++  L +  LEF+G  H G+DD+KNIARIA  L   G  L IN
Sbjct:   13 KFVFATDGPWDLQKFLNPECQRKKIPRPRYYDMWANIRYHFAEFH-------HSRRG-----NINKMLGHYRLEFQGNAHSGLDDSKNIARIAIELAREGCKLDIN 106
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BLAST of mRNA_M-pyrifera_M_contig94909.21893.1 vs. uniprot
Match: A0A817UU02_9BILA (Hypothetical protein n=3 Tax=unclassified Rotaria TaxID=2631648 RepID=A0A817UU02_9BILA)

HSP 1 Score: 89.4 bits (220), Expect = 4.380e-20
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:    1 KYAFATDGPWDFDKFLRPECVRKGIPFPKAMERYVDIRETFAAQYARRPNRFHDRPGPWCYFKVSNALKYLGLEFEGEEHRGIDDTKNIARIAQALVAAGIVLRIN 318
            K AFATDGPWDF KFLR +C    IP+P+  +++++IR+ FA  Y+ +             + +   L+ LGL F+G  H G+DD+ NIARIA  L+  G VL +N
Sbjct:   37 KCAFATDGPWDFAKFLRLQCRFNSIPYPRWAKKWINIRKEFANFYSLQR------------WGIGKMLESLGLIFDGRRHSGLDDSINIARIALELIKDGCVLLLN 130
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BLAST of mRNA_M-pyrifera_M_contig94909.21893.1 vs. uniprot
Match: A0A814G891_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A814G891_ADIRI)

HSP 1 Score: 90.9 bits (224), Expect = 1.300e-19
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = 1 
Query:    1 KYAFATDGPWDFDKFLRPECVRKGIPFPKAMERYVDIRETFAAQYARRPNRFHDRPGPWCYFKVSNALKYLGLEFEGEEHRGIDDTKNIARIAQALVAAGIVLRINSEEED 333
            K+AFATDGPWDF  FL+ +C    +P+P+   ++++IR+ FA  Y+ R           C   +   L+ LG  FEG++H G+DD+ NIARIA  L+  G +L +N    D
Sbjct:  198 KFAFATDGPWDFANFLQMQCRLNSLPYPEWANQWINIRKVFARFYSMRS----------C--GIVKMLQKLGFSFEGQQHSGLDDSTNIARIAVQLLKDGCILSLNDGIRD 296
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BLAST of mRNA_M-pyrifera_M_contig94909.21893.1 vs. uniprot
Match: A0A139A0U8_GONPJ (Exonuclease (Fragment) n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139A0U8_GONPJ)

HSP 1 Score: 87.8 bits (216), Expect = 3.080e-19
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 1 
Query:    7 AFATDGPWDFDKFLRPECVRKGIPFPKAMERYVDIRETFAA----QYARRPNRFHDRPGPWCYFKVSNALKYLGLEFEGEEHRGIDDTKNIARIAQALVAAGIVLRINSEEED 333
            +F TDGPWD   F+R +C R GI  P  M R+VD+R TF+        RRPN             +++ LK+  ++F+G  H GIDD +NIAR+A  ++ +GI    N  E D
Sbjct:  102 SFLTDGPWDLRDFMRKQCARSGIKRPPYMRRWVDLRRTFSKIIQLPSKRRPN-------------LASMLKHYNMDFDGRPHSGIDDARNIARLALHMMRSGIKFPENGTERD 201
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BLAST of mRNA_M-pyrifera_M_contig94909.21893.1 vs. uniprot
Match: A0A815P9A7_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A815P9A7_9BILA)

HSP 1 Score: 86.3 bits (212), Expect = 4.530e-19
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:    1 KYAFATDGPWDFDKFLRPECVRKGIPFPKAMERYVDIRETFAAQYARRPNRFHDRPGPWCYFKVSNALKYLGLEFEGEEHRGIDDTKNIARIAQALVAAGIVLRINSE 324
            K AFATDGPWDF KFLR +C    I +P+  + +++IR+ FA  Y  R      R G      +   L  LGL F+G  H GIDD  NIARI   L+  G VL  N +
Sbjct:   35 KLAFATDGPWDFAKFLRMQCHLSSIDYPRWAKEWINIRKEFAKFYPVR------RCG------IEKMLNNLGLSFDGRRHSGIDDAINIARITLELMKDGCVLLFNDD 130
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BLAST of mRNA_M-pyrifera_M_contig94909.21893.1 vs. uniprot
Match: A0A813U4S7_9BILA (Hypothetical protein n=5 Tax=unclassified Rotaria TaxID=2631648 RepID=A0A813U4S7_9BILA)

HSP 1 Score: 89.4 bits (220), Expect = 8.300e-19
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:    1 KYAFATDGPWDFDKFLRPECVRKGIPFPKAMERYVDIRETFAAQYARRPNRFHDRPGPWCYFKVSNALKYLGLEFEGEEHRGIDDTKNIARIAQALVAAGIVLRIN 318
            K AFATDGPWDF KFLR +C    IP+P+  +++++IR+ FA  Y+ +      R G      +   L+ LGL F+G  H G+DD+ NIARIA  L+  G VL +N
Sbjct:  222 KCAFATDGPWDFAKFLRLQCRFNSIPYPRWAKKWINIRKEFANFYSLQ------RCG------IGKMLESLGLIFDGRRHSGLDDSINIARIALELIKDGCVLLLN 315
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BLAST of mRNA_M-pyrifera_M_contig94909.21893.1 vs. uniprot
Match: A0A0N5AUX6_9BILA (Exonuclease domain-containing protein n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5AUX6_9BILA)

HSP 1 Score: 87.8 bits (216), Expect = 1.010e-18
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 1 
Query:    1 KYAFATDGPWDFDKFLRPECVRKGIPFPKAMERYVDIRETFAAQYARRPNRFHDRPGPWCYFKVSNALKYLGLEFEGEEHRGIDDTKNIARIAQALVAAGIVLRI 315
            +YAF +DGPWDF KFL+ +C +  IP P    RYV+IR+TF  +Y +  +         C   ++N L+ L + FEG  H G+DD KNIA+I   ++   + +R+
Sbjct:  173 RYAFVSDGPWDFAKFLQMQCEKSNIPIPDDFRRYVNIRKTFHTKYCKANDTQRV-----C---LTNMLRKLDMTFEGRRHCGLDDAKNIAKIVLRMLFDDVEIRV 269
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BLAST of mRNA_M-pyrifera_M_contig94909.21893.1 vs. uniprot
Match: A0A818RSI6_9BILA (Hypothetical protein n=4 Tax=Rotaria TaxID=231623 RepID=A0A818RSI6_9BILA)

HSP 1 Score: 88.6 bits (218), Expect = 1.530e-18
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 1 
Query:    1 KYAFATDGPWDFDKFLRPECVRKGIPFPKAMERYVDIRETFAAQYARRPNRFHDRPGPWCYFKVSNALKYLGLEFEGEEHRGIDDTKNIARIAQALVAAGIVLRIN 318
            K  FATDGPWDF KFLR +C    IP+P+  ++++++R+ FA+ Y+ +      R G      ++  LK +GL F+G  H G+DD+ NIARIA  L+  G +L +N
Sbjct:  222 KCGFATDGPWDFAKFLRIQCGFNSIPYPRWAKKWINVRKEFASFYSVQ------RCG------ITKMLKSVGLVFDGRHHSGLDDSVNIARIALELMKDGCILLLN 315
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94909.21893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1S3IYI9_LINUN1.230e-2244.343'-5' exoribonuclease 1 n=1 Tax=Lingula unguis Tax... [more]
V3ZNW8_LOTGI1.050e-2143.40Exonuclease domain-containing protein (Fragment) n... [more]
A0A7S2U1I5_9EUKA1.720e-2145.28Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A817UU02_9BILA4.380e-2042.45Hypothetical protein n=3 Tax=unclassified Rotaria ... [more]
A0A814G891_ADIRI1.300e-1939.64Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A139A0U8_GONPJ3.080e-1938.94Exonuclease (Fragment) n=1 Tax=Gonapodya prolifera... [more]
A0A815P9A7_9BILA4.530e-1943.52Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A813U4S7_9BILA8.300e-1944.34Hypothetical protein n=5 Tax=unclassified Rotaria ... [more]
A0A0N5AUX6_9BILA1.010e-1839.05Exonuclease domain-containing protein n=1 Tax=Syph... [more]
A0A818RSI6_9BILA1.530e-1841.51Hypothetical protein n=4 Tax=Rotaria TaxID=231623 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94909contigM-pyrifera_M_contig94909:22..354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score88.6
Seed ortholog evalue2e-15
Seed eggNOG ortholog7739.XP_002597515.1
Preferred nameERI1
KEGG koko:K18416
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000175,GO:0000280,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000737,GO:0000738,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004532,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006308,GO:0006309,GO:0006364,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006996,GO:0007049,GO:0007059,GO:0007276,GO:0007281,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0012501,GO:0016043,GO:0016070,GO:0016072,GO:0016246,GO:0016441,GO:0016458,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019222,GO:0019439,GO:0019843,GO:0019953,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0022613,GO:0030154,GO:0030262,GO:0031047,GO:0031123,GO:0031125,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0035194,GO:0036002,GO:0040029,GO:0042254,GO:0043021,GO:0043022,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044877,GO:0045132,GO:0046483,GO:0046700,GO:0048285,GO:0048468,GO:0048518,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051321,GO:0051704,GO:0060147,GO:0060149,GO:0060255,GO:0060966,GO:0060967,GO:0060968,GO:0060969,GO:0065007,GO:0070013,GO:0071204,GO:0071207,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097194,GO:0098813,GO:0140013,GO:0140097,GO:0140098,GO:1900368,GO:1900369,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1903046,GO:1990904
EggNOG free text desc.Exoribonuclease 1
EggNOG OGs39KIV@33154,3BE3Q@33208,3CS93@33213,47ZCC@7711,COG5018@1,KOG0542@2759
COG Functional cat.L
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03036
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816862.90413-CDS-M-pyrifera_M_contig94909:21..3541622816862.90413-CDS-M-pyrifera_M_contig94909:21..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94909 22..354 +
1692278222.6219647-CDS-M-pyrifera_M_contig94909:21..3541692278222.6219647-CDS-M-pyrifera_M_contig94909:21..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94909 22..354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94909.21893.1prot_M-pyrifera_M_contig94909.21893.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94909 22..354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94909.21893.1

>prot_M-pyrifera_M_contig94909.21893.1 ID=prot_M-pyrifera_M_contig94909.21893.1|Name=mRNA_M-pyrifera_M_contig94909.21893.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
KYAFATDGPWDFDKFLRPECVRKGIPFPKAMERYVDIRETFAAQYARRPN
RFHDRPGPWCYFKVSNALKYLGLEFEGEEHRGIDDTKNIARIAQALVAAG
IVLRINSEEED
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mRNA from alignment at M-pyrifera_M_contig94909:22..354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94909.21893.1 ID=mRNA_M-pyrifera_M_contig94909.21893.1|Name=mRNA_M-pyrifera_M_contig94909.21893.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig94909:22..354+ (Macrocystis pyrifera P11B4 male)
AAGTATGCCTTTGCCACGGACGGGCCTTGGGATTTCGACAAGTTCCTGCG
CCCAGAGTGCGTGCGCAAGGGCATTCCCTTCCCAAAGGCCATGGAACGGT
ACGTCGACATTCGAGAGACGTTTGCGGCGCAATATGCACGCCGTCCCAAC
CGCTTCCATGACCGGCCCGGGCCATGGTGCTACTTCAAGGTGTCCAACGC
CCTCAAGTACCTCGGGCTAGAGTTTGAGGGAGAAGAGCACCGGGGCATCG
ACGATACCAAGAACATCGCACGCATTGCACAAGCACTTGTCGCCGCAGGA
ATTGTCCTCCGCATCAACTCCGAAGAAGAAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94909:22..354+

>mRNA_M-pyrifera_M_contig94909.21893.1 ID=mRNA_M-pyrifera_M_contig94909.21893.1|Name=mRNA_M-pyrifera_M_contig94909.21893.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig94909:22..354+ (Macrocystis pyrifera P11B4 male)
AAGTATGCCTTTGCCACGGACGGGCCTTGGGATTTCGACAAGTTCCTGCG
CCCAGAGTGCGTGCGCAAGGGCATTCCCTTCCCAAAGGCCATGGAACGGT
ACGTCGACATTCGAGAGACGTTTGCGGCGCAATATGCACGCCGTCCCAAC
CGCTTCCATGACCGGCCCGGGCCATGGTGCTACTTCAAGGTGTCCAACGC
CCTCAAGTACCTCGGGCTAGAGTTTGAGGGAGAAGAGCACCGGGGCATCG
ACGATACCAAGAACATCGCACGCATTGCACAAGCACTTGTCGCCGCAGGA
ATTGTCCTCCGCATCAACTCCGAAGAAGAAGATAAGTATGCCTTTGCCAC
GGACGGGCCTTGGGATTTCGACAAGTTCCTGCGCCCAGAGTGCGTGCGCA
AGGGCATTCCCTTCCCAAAGGCCATGGAACGGTACGTCGACATTCGAGAG
ACGTTTGCGGCGCAATATGCACGCCGTCCCAACCGCTTCCATGACCGGCC
CGGGCCATGGTGCTACTTCAAGGTGTCCAACGCCCTCAAGTACCTCGGGC
TAGAGTTTGAGGGAGAAGAGCACCGGGGCATCGACGATACCAAGAACATC
GCACGCATTGCACAAGCACTTGTCGCCGCAGGAATTGTCCTCCGCATCAA
CTCCGAAGAAGAAGAT
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