mRNA_M-pyrifera_M_contig94794.21866.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: A0A1R3G215_9ROSI (DNA-directed RNA polymerase subunit n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3G215_9ROSI) HSP 1 Score: 306 bits (783), Expect = 6.400e-103 Identity = 148/155 (95.48%), Postives = 151/155 (97.42%), Query Frame = 1 Query: 1 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 465 G IG YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTT+GFDTFRNREISTGAGAIREQLADLDLRI+IDYSLVEWKELGEEG TGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS Sbjct: 6 GGAIGPYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRILIDYSLVEWKELGEEGLTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 160
BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: A0A8K1ZGM5_9DIPS (RNA polymerase beta' subunit n=38 Tax=Pentapetalae TaxID=1437201 RepID=A0A8K1ZGM5_9DIPS) HSP 1 Score: 310 bits (793), Expect = 1.130e-99 Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 1 Query: 13 GSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 465 GSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTT+GFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS Sbjct: 151 GSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 301
BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: UPI001D004AA8 (RNA polymerase beta' subunit n=1 Tax=Populus tremuloides TaxID=3693 RepID=UPI001D004AA8) HSP 1 Score: 310 bits (794), Expect = 1.140e-99 Identity = 149/155 (96.13%), Postives = 153/155 (98.71%), Query Frame = 1 Query: 1 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 465 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTT+GFDTFRNREISTGAGAIRE LADLDLRII+DYS +EWKELGEEGPTGNEWEDRKVGRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS Sbjct: 162 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRELLADLDLRIILDYSSLEWKELGEEGPTGNEWEDRKVGRRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 316
BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: A0A076FHP3_9DIPS (DNA-directed RNA polymerase subunit (Fragment) n=12 Tax=Dipsacales TaxID=4199 RepID=A0A076FHP3_9DIPS) HSP 1 Score: 304 bits (779), Expect = 2.820e-99 Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 1 Query: 19 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 465 YPNFSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTT+GFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS Sbjct: 1 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 149
BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: A0A1J0KJR0_9ROSA (DNA-directed RNA polymerase subunit beta' n=10 Tax=Pentapetalae TaxID=1437201 RepID=A0A1J0KJR0_9ROSA) HSP 1 Score: 308 bits (789), Expect = 6.040e-99 Identity = 150/155 (96.77%), Postives = 152/155 (98.06%), Query Frame = 1 Query: 1 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 465 GDPIGSYPNFSFAR IAKKPTFLRLRGSFEYEIQSWKYSIPLFFTT GFDTFRNREISTGAGAIREQLADLDLRIIIDYSL+EWKELGEEG TGNEWEDRKVGRRKDFLVRRMELAKHFIRT+IEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS Sbjct: 162 GDPIGSYPNFSFARTIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLLEWKELGEEGSTGNEWEDRKVGRRKDFLVRRMELAKHFIRTHIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 316
BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: A0A5H2Y863_PRUDU (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2Y863_PRUDU) HSP 1 Score: 318 bits (816), Expect = 7.190e-99 Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 1 Query: 1 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 465 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTT+GFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS Sbjct: 14 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 168
BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: UPI001D02756A (RNA polymerase beta' subunit n=1 Tax=Populus alba x Populus glandulosa TaxID=153471 RepID=UPI001D02756A) HSP 1 Score: 308 bits (788), Expect = 8.910e-99 Identity = 148/155 (95.48%), Postives = 152/155 (98.06%), Query Frame = 1 Query: 1 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 465 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLF TT+GFDTFRNREISTGAGAIRE LADLDLRII+DYS +EWKELGEEGPTGNEWEDRKVGRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS Sbjct: 162 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFLTTQGFDTFRNREISTGAGAIRELLADLDLRIILDYSSLEWKELGEEGPTGNEWEDRKVGRRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 316
BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: UPI001C25CF44 (DNA-directed RNA polymerase subunit beta'-like n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C25CF44) HSP 1 Score: 304 bits (778), Expect = 1.690e-98 Identity = 147/155 (94.84%), Postives = 150/155 (96.77%), Query Frame = 1 Query: 1 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 465 GDPIGSYPNFSFARPI KKPTFLRLRG FEYEIQSWKYSIPLFFTT GFDTFRNREISTGAGAIREQLADLDLRII++ SLVEWKELGEEG TGNEWEDRKVGRRKDFLVRRMELAKHF+RTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS Sbjct: 50 GDPIGSYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIREQLADLDLRIILENSLVEWKELGEEGSTGNEWEDRKVGRRKDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 204
BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: A0A6B9MLV1_9GENT (DNA-directed RNA polymerase subunit n=4 Tax=cellular organisms TaxID=131567 RepID=A0A6B9MLV1_9GENT) HSP 1 Score: 302 bits (774), Expect = 4.660e-98 Identity = 147/155 (94.84%), Postives = 151/155 (97.42%), Query Frame = 1 Query: 1 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 465 GDPIGSYPNFSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTT+GFDTFRNREISTGAGAIREQLADLDLRII++ SLVEWKELGEEG TGNEWEDRKVGRRKDF+VRRMELAKHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSS Sbjct: 39 GDPIGSYPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIILENSLVEWKELGEEGLTGNEWEDRKVGRRKDFVVRRMELAKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSS 193
BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: A0A897G2L8_9ROSA (DNA-directed RNA polymerase n=4 Tax=rosids TaxID=71275 RepID=A0A897G2L8_9ROSA) HSP 1 Score: 295 bits (754), Expect = 9.010e-98 Identity = 144/149 (96.64%), Postives = 146/149 (97.99%), Query Frame = 1 Query: 19 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 465 Y +FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTT GFDTFRNREISTGAGAIREQLADLDLRIIIDYSL+EWKELGEEG TGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS Sbjct: 149 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLLEWKELGEEGSTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 297 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig94794.21866.1 >prot_M-pyrifera_M_contig94794.21866.1 ID=prot_M-pyrifera_M_contig94794.21866.1|Name=mRNA_M-pyrifera_M_contig94794.21866.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDback to top mRNA from alignment at M-pyrifera_M_contig94794:273..737+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig94794.21866.1 ID=mRNA_M-pyrifera_M_contig94794.21866.1|Name=mRNA_M-pyrifera_M_contig94794.21866.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig94794:273..737+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig94794:273..737+ >mRNA_M-pyrifera_M_contig94794.21866.1 ID=mRNA_M-pyrifera_M_contig94794.21866.1|Name=mRNA_M-pyrifera_M_contig94794.21866.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig94794:273..737+ (Macrocystis pyrifera P11B4 male)back to top |