prot_M-pyrifera_M_contig94794.21866.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig94794.21866.1
Unique Name	prot_M-pyrifera_M_contig94794.21866.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	155

Homology

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BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: A0A1R3G215_9ROSI (DNA-directed RNA polymerase subunit n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3G215_9ROSI)

HSP 1 Score: 306 bits (783), Expect = 6.400e-103
Identity = 148/155 (95.48%), Postives = 151/155 (97.42%), Query Frame = 0

Query:    1 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 155
            G  IG YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTT+GFDTFRNREISTGAGAIREQLADLDLRI+IDYSLVEWKELGEEG TGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS
Sbjct:    6 GGAIGPYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRILIDYSLVEWKELGEEGLTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 160

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BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: A0A8K1ZGM5_9DIPS (RNA polymerase beta' subunit n=38 Tax=Pentapetalae TaxID=1437201 RepID=A0A8K1ZGM5_9DIPS)

HSP 1 Score: 310 bits (793), Expect = 1.130e-99
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0

Query:    5 GSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 155
            GSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTT+GFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS
Sbjct:  151 GSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 301

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BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: UPI001D004AA8 (RNA polymerase beta' subunit n=1 Tax=Populus tremuloides TaxID=3693 RepID=UPI001D004AA8)

HSP 1 Score: 310 bits (794), Expect = 1.140e-99
Identity = 149/155 (96.13%), Postives = 153/155 (98.71%), Query Frame = 0

Query:    1 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 155
            GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTT+GFDTFRNREISTGAGAIRE LADLDLRII+DYS +EWKELGEEGPTGNEWEDRKVGRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS
Sbjct:  162 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRELLADLDLRIILDYSSLEWKELGEEGPTGNEWEDRKVGRRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 316

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BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: A0A076FHP3_9DIPS (DNA-directed RNA polymerase subunit (Fragment) n=12 Tax=Dipsacales TaxID=4199 RepID=A0A076FHP3_9DIPS)

HSP 1 Score: 304 bits (779), Expect = 2.820e-99
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 0

Query:    7 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 155
            YPNFSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTT+GFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS
Sbjct:    1 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 149

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BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: A0A1J0KJR0_9ROSA (DNA-directed RNA polymerase subunit beta' n=10 Tax=Pentapetalae TaxID=1437201 RepID=A0A1J0KJR0_9ROSA)

HSP 1 Score: 308 bits (789), Expect = 6.040e-99
Identity = 150/155 (96.77%), Postives = 152/155 (98.06%), Query Frame = 0

Query:    1 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 155
            GDPIGSYPNFSFAR IAKKPTFLRLRGSFEYEIQSWKYSIPLFFTT GFDTFRNREISTGAGAIREQLADLDLRIIIDYSL+EWKELGEEG TGNEWEDRKVGRRKDFLVRRMELAKHFIRT+IEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS
Sbjct:  162 GDPIGSYPNFSFARTIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLLEWKELGEEGSTGNEWEDRKVGRRKDFLVRRMELAKHFIRTHIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 316

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BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: A0A5H2Y863_PRUDU (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2Y863_PRUDU)

HSP 1 Score: 318 bits (816), Expect = 7.190e-99
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0

Query:    1 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 155
            GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTT+GFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS
Sbjct:   14 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 168

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BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: UPI001D02756A (RNA polymerase beta' subunit n=1 Tax=Populus alba x Populus glandulosa TaxID=153471 RepID=UPI001D02756A)

HSP 1 Score: 308 bits (788), Expect = 8.910e-99
Identity = 148/155 (95.48%), Postives = 152/155 (98.06%), Query Frame = 0

Query:    1 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 155
            GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLF TT+GFDTFRNREISTGAGAIRE LADLDLRII+DYS +EWKELGEEGPTGNEWEDRKVGRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS
Sbjct:  162 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFLTTQGFDTFRNREISTGAGAIRELLADLDLRIILDYSSLEWKELGEEGPTGNEWEDRKVGRRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 316

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BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: UPI001C25CF44 (DNA-directed RNA polymerase subunit beta'-like n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C25CF44)

HSP 1 Score: 304 bits (778), Expect = 1.690e-98
Identity = 147/155 (94.84%), Postives = 150/155 (96.77%), Query Frame = 0

Query:    1 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 155
            GDPIGSYPNFSFARPI KKPTFLRLRG FEYEIQSWKYSIPLFFTT GFDTFRNREISTGAGAIREQLADLDLRII++ SLVEWKELGEEG TGNEWEDRKVGRRKDFLVRRMELAKHF+RTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS
Sbjct:   50 GDPIGSYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIREQLADLDLRIILENSLVEWKELGEEGSTGNEWEDRKVGRRKDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 204

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BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: A0A6B9MLV1_9GENT (DNA-directed RNA polymerase subunit n=4 Tax=cellular organisms TaxID=131567 RepID=A0A6B9MLV1_9GENT)

HSP 1 Score: 302 bits (774), Expect = 4.660e-98
Identity = 147/155 (94.84%), Postives = 151/155 (97.42%), Query Frame = 0

Query:    1 GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 155
            GDPIGSYPNFSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTT+GFDTFRNREISTGAGAIREQLADLDLRII++ SLVEWKELGEEG TGNEWEDRKVGRRKDF+VRRMELAKHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSS
Sbjct:   39 GDPIGSYPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIILENSLVEWKELGEEGLTGNEWEDRKVGRRKDFVVRRMELAKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSS 193

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BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Match: A0A897G2L8_9ROSA (DNA-directed RNA polymerase n=4 Tax=rosids TaxID=71275 RepID=A0A897G2L8_9ROSA)

HSP 1 Score: 295 bits (754), Expect = 9.010e-98
Identity = 144/149 (96.64%), Postives = 146/149 (97.99%), Query Frame = 0

Query:    7 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 155
            Y +FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTT GFDTFRNREISTGAGAIREQLADLDLRIIIDYSL+EWKELGEEG TGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS
Sbjct:  149 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLLEWKELGEEGSTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 297

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig94794.21866.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1R3G215_9ROSI	6.400e-103	95.48	DNA-directed RNA polymerase subunit n=1 Tax=Corcho...	[more]
A0A8K1ZGM5_9DIPS	1.130e-99	99.34	RNA polymerase beta' subunit n=38 Tax=Pentapetalae...	[more]
UPI001D004AA8	1.140e-99	96.13	RNA polymerase beta' subunit n=1 Tax=Populus tremu...	[more]
A0A076FHP3_9DIPS	2.820e-99	98.66	DNA-directed RNA polymerase subunit (Fragment) n=1...	[more]
A0A1J0KJR0_9ROSA	6.040e-99	96.77	DNA-directed RNA polymerase subunit beta' n=10 Tax...	[more]
A0A5H2Y863_PRUDU	7.190e-99	99.35	DNA-directed RNA polymerase subunit (Fragment) n=1...	[more]
UPI001D02756A	8.910e-99	95.48	RNA polymerase beta' subunit n=1 Tax=Populus alba ...	[more]
UPI001C25CF44	1.690e-98	94.84	DNA-directed RNA polymerase subunit beta'-like n=1...	[more]
A0A6B9MLV1_9GENT	4.660e-98	94.84	DNA-directed RNA polymerase subunit n=4 Tax=cellul...	[more]
A0A897G2L8_9ROSA	9.010e-98	96.64	DNA-directed RNA polymerase n=4 Tax=rosids TaxID=7...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 116..151 e-value: 4.6E-8 score: 32.8
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 31..154

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig94794	contig	M-pyrifera_M_contig94794:273..737 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig94794.21866.1	mRNA_M-pyrifera_M_contig94794.21866.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig94794 273..737 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig94794.21866.1 ID=prot_M-pyrifera_M_contig94794.21866.1|Name=mRNA_M-pyrifera_M_contig94794.21866.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
GDPIGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFD
TFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDR
KVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGG
KLMSS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007080	RNA_pol_Rpb1_1