mRNA_M-pyrifera_M_contig9472.21854.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9472.21854.1
Unique NamemRNA_M-pyrifera_M_contig9472.21854.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig9472.21854.1 vs. uniprot
Match: D7FMF6_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF6_ECTSI)

HSP 1 Score: 441 bits (1133), Expect = 2.610e-139
Identity = 270/472 (57.20%), Postives = 307/472 (65.04%), Query Frame = 1 
Query:    1 WQVAGFDWTMPRQVVAADGSRRGRAAAADRRALEENTNARGRNSNSVTSLXXXXXXXXXXXXSAQHVPGLGLETIPCRNRSNQMLYLSVEAASVRMNSVLVTVFAGFWIRNLSGLPLTLGEPVPAGLSALELQQETGIDRRDRAQRQDQNGGRSCCGRYSPSPPRGHSLCDVLVSAVQSDQHGMSEEVFELRSERAGHHGTDAYDTRWCTAQANPRMPYTQVRLPSDLWRWEGDWAIDRSGAVAPDAPGTDGGGWESCPRKPKGKNYGSTSFAPSRSFKLSDPIWRRRWVRRRVPC-RPPSARGTDSAPNS-LPKSATXXXXXXXXXXXXXXXXXXXXXXXGGKRRDASESMT-RPGRERPTSWSKQRSGR--YTVMNRCDCVLVVSQYGSDVSMELEPGESRPLHWADGSLEATLSVTV-------AAPPASAEASE--GALMGWSGPVGIGNIGKFPICIRPMPGGAALP 1374
            ++VAGFDWT P QV  A+  R  RA + D                     XXXXXXXXX   +++HVPG+ L+++PCRN SNQ+LYLSVEAASVRMNSVLVTVF+GFW+RNLSGLPLTLGEPV  GLS LEL +E   D          +  R    RYSPSPPR  S  DV +SAVQSDQHGM+EEVFELR  R G  G D+YDTRW TAQ NPR P TQVRLPSDLWRW+G+W +D SGAVAP+APGT GGGWESCPRK KG +Y ++SF+ SR+F LSDP+WRRR  RR V   R   A     AP S +                             G  +D     T  PGR R TS  + R  R  YTVMN+CDCVLVV QYGS+V+MEL PGESRPLHWADGSLEATLSV+V       AA  +S E S    ALM WSGPVGIGNIG FPICIRP PGGAALP
Sbjct:  557 FKVAGFDWTPPHQVAVAELMRPTRAGSTDSDGXXXXX--------XXXXXXXXXXXXXXVPTTSEHVPGISLQSVPCRNMSNQILYLSVEAASVRMNSVLVTVFSGFWVRNLSGLPLTLGEPVSRGLSPLELHEERLAD----------SAARDKMRRYSPSPPR-QSSWDVHLSAVQSDQHGMTEEVFELRLARRGQEGMDSYDTRWITAQGNPRSPCTQVRLPSDLWRWDGEWTMDVSGAVAPNAPGTGGGGWESCPRKLKGASYSNSSFSSSRAFTLSDPVWRRRGTRRPVSRHRLSRASPWGKAPRSFISHRQAWSARSGSQQLRPPERSGGVRGARAGPEQDYVCGWTILPGRGRSTSRCRGRGDRFRYTVMNKCDCVLVVRQYGSNVTMELGPGESRPLHWADGSLEATLSVSVISRGTTAAAAGSSPEMSPTTAALMDWSGPVGIGNIGTFPICIRPKPGGAALP 1009
[Close]
BLAST of mRNA_M-pyrifera_M_contig9472.21854.1 vs. uniprot
Match: A0A6H5L5D8_9PHAE (PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5D8_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 8.830e-107
Identity = 179/297 (60.27%), Postives = 209/297 (70.37%), Query Frame = 1 
Query:    4 QVAGFDWTMPRQVVAADGSRRGRAAAADRRALEENTNARGRNSNSVTSLXXXXXXXXXXXXSAQHVPGLGLETIPCRNRSNQMLYLSVEAASVRMNSVLVTVFAGFWIRNLSGLPLTLGEPVPAGLSALELQQETGIDRRDRAQRQDQNGGRSCCGRYSPSPPRGHSLCDVLVSAVQSDQHGMSEEVFELRSERAGHHGTDAYDTRWCTAQANPRMPYTQVRLPSDLWRWEGDWAIDRSGAVAPDAPGTDGGGWESCPRKPKGKNYGSTSFAPSRSFKLSDPIWRRRWVRRRVPCRP 894
            +VAGFDWT P QV  A+  R  R         E +T + G                     +++HVPG+ L+++PCRN SNQ+LYLSVEAASVRMNSVLVTV+AGFW+RNLSGLPLTLGEPV  GLS LEL +E   D          +  R    RYSPSPPR  S+ DV +SAVQSDQHG++EEVFELR  R G  G D+YDTRW TAQ NPR P TQVRLPSDLWRW+G+W ID SGAVAP+APGTDGGGWESCPRK KG +Y ++SF+ SR+F LSDP+WRRRWVRRRVP RP
Sbjct:  442 KVAGFDWTSPHQVAVAELMRPTR---------EGSTGSDGXXXXXXXXXRGRELPGGGVSTTSEHVPGISLQSVPCRNMSNQILYLSVEAASVRMNSVLVTVYAGFWVRNLSGLPLTLGEPVSRGLSPLELHEERLAD----------SAARDKTRRYSPSPPRQSSV-DVYLSAVQSDQHGLTEEVFELRLARRGEEGMDSYDTRWITAQGNPRSPCTQVRLPSDLWRWDGEWTIDVSGAVAPNAPGTDGGGWESCPRKLKGASYSNSSFSSSRAFTLSDPVWRRRWVRRRVPYRP 718
[Close]
BLAST of mRNA_M-pyrifera_M_contig9472.21854.1 vs. uniprot
Match: A0A6H5KXT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 3.810e-19
Identity = 56/77 (72.73%), Postives = 57/77 (74.03%), Query Frame = 1 
Query: 1168 MELEPGESRPLHWADGSLEATLSVTV--------AAPPASAEASEGALMGWSGPVGIGNIGKFPICIRPMPGGAALP 1374
            MEL PGESRPLHWADGSLEATLSV+V        A   AS  A   ALM WSGPVGIGNIG FPICIRP PGGAALP
Sbjct:    1 MELGPGESRPLHWADGSLEATLSVSVISQGLTAAATGSASEMAPTAALMDWSGPVGIGNIGTFPICIRPKPGGAALP 77
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9472.21854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMF6_ECTSI2.610e-13957.20SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L5D8_9PHAE8.830e-10760.27PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5KXT8_9PHAE3.810e-1972.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9472contigM-pyrifera_M_contig9472:2591..10719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVacuolar protein sorting-associated protein 13
Ec32 orthologEc-05_000910.1
Exons8
Model size1374
Cds size1347
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.8788955-CDS-M-pyrifera_M_contig9472:2590..27471622816860.8788955-CDS-M-pyrifera_M_contig9472:2590..2747Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 2591..2747 -
1692278221.477042-CDS-M-pyrifera_M_contig9472:2590..27471692278221.477042-CDS-M-pyrifera_M_contig9472:2590..2747Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 2591..2747 -
1622816860.8944151-CDS-M-pyrifera_M_contig9472:4123..42401622816860.8944151-CDS-M-pyrifera_M_contig9472:4123..4240Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 4124..4240 -
1692278221.4896138-CDS-M-pyrifera_M_contig9472:4123..42401692278221.4896138-CDS-M-pyrifera_M_contig9472:4123..4240Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 4124..4240 -
1622816860.9113631-CDS-M-pyrifera_M_contig9472:5221..52911622816860.9113631-CDS-M-pyrifera_M_contig9472:5221..5291Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 5222..5291 -
1692278221.503337-CDS-M-pyrifera_M_contig9472:5221..52911692278221.503337-CDS-M-pyrifera_M_contig9472:5221..5291Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 5222..5291 -
1622816860.9251938-CDS-M-pyrifera_M_contig9472:7500..77361622816860.9251938-CDS-M-pyrifera_M_contig9472:7500..7736Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 7501..7736 -
1692278221.5125802-CDS-M-pyrifera_M_contig9472:7500..77361692278221.5125802-CDS-M-pyrifera_M_contig9472:7500..7736Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 7501..7736 -
1622816860.9441366-CDS-M-pyrifera_M_contig9472:8357..84881622816860.9441366-CDS-M-pyrifera_M_contig9472:8357..8488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 8358..8488 -
1692278221.521269-CDS-M-pyrifera_M_contig9472:8357..84881692278221.521269-CDS-M-pyrifera_M_contig9472:8357..8488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 8358..8488 -
1622816860.9586096-CDS-M-pyrifera_M_contig9472:8822..90121622816860.9586096-CDS-M-pyrifera_M_contig9472:8822..9012Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 8823..9012 -
1692278221.529545-CDS-M-pyrifera_M_contig9472:8822..90121692278221.529545-CDS-M-pyrifera_M_contig9472:8822..9012Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 8823..9012 -
1622816860.9732666-CDS-M-pyrifera_M_contig9472:9687..98751622816860.9732666-CDS-M-pyrifera_M_contig9472:9687..9875Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 9688..9875 -
1692278221.539539-CDS-M-pyrifera_M_contig9472:9687..98751692278221.539539-CDS-M-pyrifera_M_contig9472:9687..9875Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 9688..9875 -
1622816860.9889138-CDS-M-pyrifera_M_contig9472:10434..106921622816860.9889138-CDS-M-pyrifera_M_contig9472:10434..10692Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 10435..10692 -
1692278221.5499244-CDS-M-pyrifera_M_contig9472:10434..106921692278221.5499244-CDS-M-pyrifera_M_contig9472:10434..10692Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9472 10435..10692 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.9997916-UTR-M-pyrifera_M_contig9472:10692..107191622816860.9997916-UTR-M-pyrifera_M_contig9472:10692..10719Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9472 10693..10719 -
1692278221.5600116-UTR-M-pyrifera_M_contig9472:10692..107191692278221.5600116-UTR-M-pyrifera_M_contig9472:10692..10719Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9472 10693..10719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9472.21854.1prot_M-pyrifera_M_contig9472.21854.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9472 2591..10692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9472.21854.1

>prot_M-pyrifera_M_contig9472.21854.1 ID=prot_M-pyrifera_M_contig9472.21854.1|Name=mRNA_M-pyrifera_M_contig9472.21854.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=449bp
MPRQVVAADGSRRGRAAAADRRALEENTNARGRNSNSVTSLMAGGGGGGG
GGGSAQHVPGLGLETIPCRNRSNQMLYLSVEAASVRMNSVLVTVFAGFWI
RNLSGLPLTLGEPVPAGLSALELQQETGIDRRDRAQRQDQNGGRSCCGRY
SPSPPRGHSLCDVLVSAVQSDQHGMSEEVFELRSERAGHHGTDAYDTRWC
TAQANPRMPYTQVRLPSDLWRWEGDWAIDRSGAVAPDAPGTDGGGWESCP
RKPKGKNYGSTSFAPSRSFKLSDPIWRRRWVRRRVPCRPPSARGTDSAPN
SLPKSATDSVPSLAQESAKNLASGRAGSSGGGKRRDASESMTRPGRERPT
SWSKQRSGRYTVMNRCDCVLVVSQYGSDVSMELEPGESRPLHWADGSLEA
TLSVTVAAPPASAEASEGALMGWSGPVGIGNIGKFPICIRPMPGGAALP
back to top

mRNA from alignment at M-pyrifera_M_contig9472:2591..10719-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9472.21854.1 ID=mRNA_M-pyrifera_M_contig9472.21854.1|Name=mRNA_M-pyrifera_M_contig9472.21854.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=8129bp|location=Sequence derived from alignment at M-pyrifera_M_contig9472:2591..10719- (Macrocystis pyrifera P11B4 male)
TGGCAGGTCGCTGGCTTCGACTGGACGATGCCTCGCCAAGTGGTGGCCGC
GGACGGCTCGAGGAGGGGCCGCGCCGCCGCTGCCGACCGCCGAGCGCTGG
AAGAAAACACCAACGCACGCGGGCGGAACTCCAATAGCGTCACGTCGTTG
ATGGCCGGAGGGGGAGGAGGAGGAGGAGGCGGGGGGTCGGCTCAACATGT
TCCCGGTTTGGGTCTGGAGACTATTCCGTGCCGCAACAGGAGCAACCAGA
TGCTGTACTTGAGTGTGGAGGCCGCGTCTGTCAGGGTGAGAGCCTGATTT
TGTAGAATGTAGCTGTATTTGTAACTGTAACGGTACTGTAACTGTAACGG
TAACTGTTGCTGTGACGTAACTCTGGTACGGGACCATGGAAATACCGGGG
ACGGTAGATATCATCCCCGGGTTTCAGGTTATATATAGCCGGTGAGTGCC
ATCAAAATATCGGTAGGGGTTATTTCCGGTAAGTTATTACTGCTCTATCC
CGGATATAAGAACAGTTTGTGTATAATAGTGCCGGTCCCTCTATAGTGCC
GGTTTGCATGCGCCAGCACTACCGGCACTATATAGCGGCAACCGGCACTA
ATCCCTCCGCGCACCTCCATCCTGGTTATTAATTCCGTGTGCGCCAATCG
ATTCGGTTTCACAAGCACTAGTCGTATCGGGCGACCGGCACTACTCAACT
GACACTCTAGAGGAAAGGGACCACTACTGCTGTACATGTAAAGTATGAAT
CCTAGCGGTCTTTGCTGTTCGGAACAGAGTAGTACTCTACCTCTTAGCGC
TAATGCTAGCTCTATACCTGGACCCGTGAATGTGACCTGCCCAGATGAAT
TCGGTCCTTGTGACGGTGTTCGCCGGTTTCTGGATCCGCAACTTGAGCGG
CCTGCCTCTCACCCTGGGAGAGCCTGTTCCCGCAGGGCTATCGGCGCTCG
AGCTGCAGCAGGAGACGGGGATCGACCGGCGGGACAGGGCCCAAAGGCAA
GACCAAAATGGAGGTCGTTCATGCTGTGGTCGGTTGGTTGCTTTTTCTTG
CTCGGTTGGTTGGTTTGTGTGTTGATTGACTGATTGGTAGATTGGCTGAT
TATTTGGTCAATTACGTGGCTGATGGATCAATACGTAGGTTGATCGGTTG
GTTGAGGGGTTGATTTATTTATTGATTGATTGGTTGGGTGGTTGATTGGT
AGATTTTGGTAATTGGTCGGTTTTTTATTGTTTGCTTGATCGATTCATTG
GTTGATTGGTAGCTTGTTTACATTGGTTACGGGATCGTCGGCTTTCTTCG
TTGGTTGGATCGATTTGCCCGAACGATTGATACCTGGTAGATTTATTGGG
TGTTTCGCTTGGTTGAAATGCTAGATTATTTTCTTGTTGATTTTATTGGA
TTGCCGTAGACACATAAGCAGAAGACGTATCTTGCTGCAACCAGCTCTGT
TTGATCTCTTTTGCGCCCCGACGGTCGTTGCATATCCATCCTGAGCGGTA
CCAGGTAGTTCATGACCCCCCACCCCCACAAATCGTTTAGGTTTCTCCCC
CAAACCACTGGCCGGCTTGGGCCCTGCTCCCGTTAAGGCCTACTCCGGAA
CTTCCACACAACACCGAAAGCACACTTACAACGCTTTCGAGCGTTTCTAT
TACGCCAACGCCCCCGCCCCCTTTTCCCTTAACGCCTCTGTTGCTTATCA
TCGCCAGGTATAGCCCCTCCCCTCCGAGGGGGCATTCCCTCTGCGACGTG
CTAGTCTCGGCGGTCCAGTCGGACCAGCACGGCATGTCGGAGGAGGTTTT
CGAGCTGAGGTCGGAGCGCGCTGGTCACCATGGGACGGATGCTTACGACA
CCCGGTGGTGCACTGCTCAAGCTAACCCCAGGATGCCCTACACTCAGGTA
CTGATATAGTTTTTTTTTAATCTTGTAGGATATGAAATGAATGATATGCC
AGCCCGGAAGTATATGAAAATCAGGCGCAAAAGCAAAAACCAGCTTGTGT
ACACTGCCTGCTCGGTGGAAACCCGACGTGCTCCGTCCCGGCATTGTATG
TAGGGATGCGAGGGTCTATCTATGGTCATGCGACTACGCCATGCATGCTA
TGACTACACCCCCCCGCGCACGCTCCGTCTCGGCAATGAAAAGATGCGAG
GACCTATGTCATACGACTACGGCCACTTTTGAACATGAGTACACCCCCCC
TCCCCCGACTGGTATACAAAATACATCGCAGGTGCGATTGCCGAGCGACC
TCTGGAGGTGGGAGGGTGATTGGGCGATCGACCGCTCCGGTGCCGTCGCC
CCTGACGCTCCTGGGACGGACGGAGGGGGTTGGGAGAGCTGTCCCAGAAA
ACCCAAGGGTAAGTCAGGCTTGGTGGTGGTGGGGGTGGTAGTAGTGGGCG
GGGGCTAGGGGGTGTACTCATGTCGTGCATGGCCGAGGTCTTATGACCAT
AGGGGGCGTAACTCATTTGTTGCTTGCCTTGGTCATTTGACCATTGACCA
TATGGCCATAAGGGGAGGGTAGAAGTGGTTGGTGGTGGTGGTGATAATGC
GGATGGTGCGGGTGGAGGTCGTGGTGGCGGCGGTAGTGTTGGTGTTGGTG
CTATTCGCTGGTGGTGGACTGTGGTGTTTCTTCTGCTGGTTGCGCTTGGG
ATTGGGGGTGATGATGTGGTGGTTGTTTTTGCTGCAGTTCATGTTGCTGT
CGCAGCTGCTCCTGCTGCTACTGTTGGTACCGTCTTTGGTGTATTCTACT
AAAGTTTAACTTTTTGCTGTCCTCTATGTTAGCATGTCCGTGGTCGCAAA
GTAAACGACAGGCCCGCCGAACACTCTGGAAGGAACACGTTCAAAAAGCA
AACACGAAACTATTTAGCACGAATAACATGGATGTTGCCCTCGTAACCGC
TTCGATTTAGCTCTCACCCTCTGGCCTTTTTTTGTCGTTTGACACCCGTG
CCCCTTCCTCTGTATTTTGCGAAACTCAGGCAGGAACTACGGCAGCACCA
GTTTTGCTCCTTCCAGGTCTTTTAAGCTTTCCGATCCCATCTGGAGGCGG
CGGTGGGTGCGCCGGCGCGTCCCCTGCCGGCCACCATCAGCGCGCGGGAC
GGATTCCGCACCGAATTCGTTGCCGAAATCGGCGACGGATTCGGTGCCGA
GTTTGGCGCAGGAGTCGGCGAAGAATTTGGCTTCGGGGCGTGCAGGGAGT
TCCGGAGGAGGTAAGAGACGTGTCTCTGTCATTTTTTTCGGGCTATAGCA
TTCGTAGGCTTTGCATTGAGAAGGGGGAGACCGTAAAGGCGTTTTCGCTG
TCATTTCGTTCCGGGTTGAGTTTGTAGGCTTTGCATTGAGAGGAGGGGGG
CGGGGTGATTCCCGCCGGAAATCGATAACAGCGCATGCTACGTAACCATT
TGGTGTCGCCATGTCCGAGGTCGTTCTTTCTGTACTGGTTGTTCACACCT
CGTACATGTATGTCATCGACTCCCACTTCATGATTTACATATTTCGCGGC
ATACTCCTGATCTGCATGATTTGTATGATCTGTATGATCTGTACCTTATG
CATGATTTGTGTGATATATATGTATGATATGTATGCTATGTATAATATGT
ATAGTCGGTATGATCTGTATGATATGCATCATCTGTATGGTCTGTATGAT
ATGTATCATCTGTATCATCTGTATGGTCTGTACGATCTGTGTGATACGTA
TAATCTGTGTGATGTTGGACCATGTTTCCGGGGTTGGGTCTGTACTGCAC
AGATCCTGCGTCACACCGGAAAACGACAGGTTTGGAGCTAGATGCTTGTA
GATTGTGGTCTGTTTGACGTACGTGTCTGTTTTGTCTTATGAATCACCTC
GAGCCTGTTGTTGACGTTTCGGTCGCCGGCTGACTACTGTTGCGTTTTTT
TTTCTTGTTTTTTTTTCGTCACGGCAGGTTGTGCGCCTTAACAACAACAA
CGGCAACCCCTATTTTTAGTTTTTATCAAGCCTTTTTTTTTTCAGGATTT
GCCGGCAGTGAATTGAAAGATCAATATGTGTAGCTGACACCGCATACGTG
CAGCAAGCGAACTCCCCGATAATTCGGTCCTGGGTCAGTATCACGGGGGC
ATAGGCAAGGGTGTCCCGTATCCGTTTTTCCCTGTTCGCTGAAACTACTT
TGGGTACGCCACCCAACTTGAGAACGGACACGGCAACAGGGTACGCCACA
CAACTTAAGAAACACTCCTGTTTCGGTCAGGCCCAATTTTCTCATGCGAA
ACATGGTTTGCCTGCACTACGCTGCTGTTGTCGAGTGTTGAGCATCAAAC
AATGTTTCTGAAGTTTCGTGCGAAAAAGCCCAAGGGCTTGTCGGGTAGGC
ACGCACCAACGTGTACCGGCGGTATTTTTTTTTTTTGCTTTTTTTCTCGA
TCCTTTTATGATCTCCACCTGTTCTCTTTCCTCTCTCCCGCCTGTTAATA
CTACGGGGGACCATAGTAAATAGGATCAAATCTTGTGAGTAAAGATAGGT
AAATATAAAGGTTTTTGTGTGTACCGTGGGTCCTATTTACTATGGTCTCC
CGTGATAGTCGTAACTCAGATCCGGGGTCGCATAGTACAGCAGGCTCTCC
TCCCCCCTTCCCAAATACTAAGGCTCGTGCCTTACCTACGACTTCGTGTC
TTTCTTTCCTCGTCGACTTGCGTCGAAGTTTTTCCTCGGTATATGCCCTA
CCGAGGTCGTAGGTAAGGTTCGGTACGGCCTCCATGCCCTGCCGAACACT
CCGGCAAGGTTCGGTACGAAGTCGATACTGGTACCCTTGTAATTCGTACG
ATCTCAATTCAAGTACCCGACACTTCGGCAAGTTCGGTACGACCTCAGTA
CTACTGTAGTACCTGACGTCGGTAAGTGCGGTACGTCCTCAGTACCGATT
ACCGAACATTTCGGTACGTTCGGTACACCCACCAAGAATACCCCGGGTTT
GCCGGTTTACCGAACGACATCCTTGCATTTCTCTAGCCGAAAAATTACGA
TTCCCAAATTCTCAAGTGCTGTCTCGTACTGCTGTACACATGTTTCCTTC
TTTCTCGACACAGGTACCTCTGTCATCTACCAGCCCGCGGCGAGCCTCAT
CACAAACAGAGGGTTACCTCTAGGCCAGGAAGGCGGTGCGGGGAAGGGTC
AGGGGCAGGGGGGAGGGGAGGAAGATGGGCGCCCCTCCGGAGCCGGCCTG
TGCGTGAAAGTAGACGACTCGGCCTGGTCGCGGGCGCTTAACATCGCGGT
CCAAGGAGCGGGCGGACCTTTCCAGGCAAGCGCTTTTTTTTTTCTTGCTT
CCGACTTGTTTTCAATTTTCTCCTTTCACGAGTCGGAAATGCTTTTTTTG
TTCTACTTATCCAGCGATTTTTTATGAATTTTTGTCTTGTGGATTTATTT
GATTCATGTTTGTCACCTCTGTTTTGAGGCGATGCGTCAGAGTCGATGAC
CCGGCCCGGTCGCGAGCGCCCAACATCGTGGTCCAAGCAGAGGAGCGGGT
GGACCGATTTTAGCATCCTTTTTTTTTTCAACGTTGTATATTTCATGTTT
CAACGTTTACCCGGAGCCAATAACACGATCAACCAATGGTGCGTCTCGTA
CACAGTATGCTCGAACAAGTAGTGAAGCTGGACAAATGTACTTTGAAAAC
GCGAGAAAACTGTGAACAAGTACCAGAGAAGTTGCTGCGGAATACCACCA
TACCGTTAGTATTTCTTTATACCTAGTACTCAACGCTGCCTCCAAATGGC
CTGGGGACTCCAGGTGCCGGGGGGGCGATGGCCGGGCTTGAAACGCCCGG
CGCTTCCCACCACCAACGGCGCGGGGGCGAGGAAGCCTATCCAGCAGCGT
ATCGGCAGTCGGCGCAGGGTGAATGCTGCCGCTAATGCTAGCGCTAGCTC
CGGTGTTGGTGTCGGGAAGGGAGGAGGCGTGTGGGGAGAAGGGGACGTGG
GGGTGTACGAGCTGGCGTATGATGTCCGGGTAGCGCCTGCACCTTGGAAC
CGCACGAGAGTTATCACCATCGCTTCAAGGTGGGTGGGAGGGAAGGAGGG
AGGGAGGGAGGGAGGGAGGGGGCGGGGTGCCACTCGACCTTGATTTGTTT
CGTCGGACACATTTACGTATACATGGTAGAGAAGACAACCCTAAGCTCCT
TTCCCAAGACCAGAAAGAGAAACAACAATCGCCAGAAAGGTGAGATTTCT
GGACGAACAAGAAACTAAAATGTTTTTTTTTAATATATACCTGATGCATA
TTTTGTTTGCTTGGTTTTGGTATACCCCCTCCCCTGCCCGCAACGGAAGG
TGTAAATTTTTTCGAATACCCCTTTGATACATGTGTAACATGGTGTTATT
CTGCGGATCGGATGATTTGGTTGTTGTTTTTCATCGTGGTGGTGGTGGCA
GTGTTTCGTTGATCCGCTTGATCGTTGGTGGCGTTCCGGATATCAACCAT
GTGGTTTTTTGTGCCTTCTTCTCATTGAGCAGGTACACGGTCATGAACCG
ATGCGACTGCGTGCTGGTCGTCAGTCAGTACGGCAGCGACGTCAGCATGG
AGCTCGAGCCGGGGGAGTCCCGGCCTCTTCACTGGGCCGACGGCAGGTAA
GAAGCACCGCCCCCTCTCTTATCTCTAGGGACTACTGCAGTCATATATGC
CGAACGTTTTGATATATCGGTATATCGAACTTTCGATGTATCGTATTTAT
CGAACTTGATTTGCTCTCCATCCCCTCGCATCCTCGTGCTTTTCGTGCTG
ACGCTGAAGGAAAGCTTCGATGTTATCAAATATCGAAAGTCGTATTGATT
TGTTTTTTTTGTTCATCGGTATCGTATCGAACTCGATTCCGACATCCGAT
ATCCGATATCCGTCGCGAGCAGTACACTATGGTCATTATCGTCTTCCCCG
CCTTTGGTCCGTCTCGTATTCCACGATGTTTGTTTCCTCCTCTTCCGCGA
TGGTTGGTGTCGTACATATTGTAGTCGGAGATATTAGTTGGCGTGGGTAG
TGATTGGTTGATCTCGCACTTCGCGCGAAGATCGACTTGGTTGTTGTCGA
CAGTTTTTTGCTCGCGTTTGTTAGTTTGAGGTTTCCATTTTAGTCATTTT
TTGACGGGGGGCCGAGGGTCGCTTTTGCGGTTCGTTTGTCGTGGTCAGTT
GGTGGATGAATGATACAATGAAATTGAATCGCACGGCCGCCGCCGCAGCG
GGGCAGCTGTACCTTCCGCAGGATGTAACACCCTCATCCTCTGACGGTTC
TCTCGACAGCAGTACATGGAGAAAAGGTCGTCAAGATGTTTCCAGAGCCA
CAGTTTCTGTATGTGTGTGTACCCAGCTTGCTTATGGTCGAAACTGGGCT
CGGAAATTGTCCCCAGGGGGTGTCGTCTTGTCACCCGTGTGATACGGTAT
GAGGGGGTGTGATGTCTTATCACCCGTGTGACACGGTATGAGGGGGTGTG
TTATCTTATCACCCGTGCGATACGGTATGAGCGGGTGTGTTGTCTTACCA
CCCCCCTGTGATAGTGTCATACGGACACATGCTAAGGTAGAGGTGCGCCA
TTTTTTTTTTCAGGAGGAGCTCCATACCTCACCCAATAAAAAAAAACGCA
TCCCTATTTTACAATGCCGTCGCCGACTATTTTGGCGTTGAAGAGGCCCT
TTATTCCTTTGGTAGCGCGCGTGTCCGTACCAGGTATCTGGTATAAGATA
TGTGGGTTTTCGCTTGAACCCTCAGACTATGCACTAAAAAATGGTGTCCC
AAACTCACTCCGAGTGGCATGTCCCACAATCAATGGTCGCAATTCTTGGG
GGTAACCTATACAACGTGCTCGGTGGCTGATTTCACCGTCCGCGATGGTT
GATCTCGTGTTCGATGAGTTTGGTTGGTCACACGGCCTGCGCGATGTCTG
ATGAGCTCGTCGTCCTCCTCCTCGCCTGATGATTGAACCAAAAAAACGAT
GCAATGGATCTCTCGGACGCAGCTTGGAAGCCACCTTGTCGGTGACCGTC
GCCGCTCCTCCAGCCTCCGCCGAAGCCTCAGAAGGTGCCCTGATGGGATG
GAGCGGACCCGTCGGCATCGGAAACATCGGAAAGTTCCCCATCTGCATTC
GCCCGATGCCTGGGGGAGCGGCATTGCCT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9472:2591..10719-

>mRNA_M-pyrifera_M_contig9472.21854.1 ID=mRNA_M-pyrifera_M_contig9472.21854.1|Name=mRNA_M-pyrifera_M_contig9472.21854.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2694bp|location=Sequence derived from alignment at M-pyrifera_M_contig9472:2591..10719- (Macrocystis pyrifera P11B4 male)
ATGCCTCGCCAAGTGGTGGCCGCGGACGGCTCGAGGAGGGGCCGCGCCGC
CGCTGCCGACCGCCGAGCGCTGGAAGAAAACACCAACGCACGCGGGCGGA
ACTCCAATAGCGTCACGTCGTTGATGGCCGGAGGGGGAGGAGGAGGAGGA
GGCGGGGGGTCGGCTCAACATGTTCCCGGTTTGGGTCTGGAGACTATTCC
GTGCCGCAACAGGAGCAACCAGATGCTGTACTTGAGTGTGGAGGCCGCGT
CTGTCAGGATGCCTCGCCAAGTGGTGGCCGCGGACGGCTCGAGGAGGGGC
CGCGCCGCCGCTGCCGACCGCCGAGCGCTGGAAGAAAACACCAACGCACG
CGGGCGGAACTCCAATAGCGTCACGTCGTTGATGGCCGGAGGGGGAGGAG
GAGGAGGAGGCGGGGGGTCGGCTCAACATGTTCCCGGTTTGGGTCTGGAG
ACTATTCCGTGCCGCAACAGGAGCAACCAGATGCTGTACTTGAGTGTGGA
GGCCGCGTCTGTCAGGATGAATTCGGTCCTTGTGACGGTGTTCGCCGGTT
TCTGGATCCGCAACTTGAGCGGCCTGCCTCTCACCCTGGGAGAGCCTGTT
CCCGCAGGGCTATCGGCGCTCGAGCTGCAGCAGGAGACGGGGATCGACCG
GCGGGACAGGGCCCAAAGGCAAGACCAAAATGGAGGTCGTTCATGCTGTG
GTCGATGAATTCGGTCCTTGTGACGGTGTTCGCCGGTTTCTGGATCCGCA
ACTTGAGCGGCCTGCCTCTCACCCTGGGAGAGCCTGTTCCCGCAGGGCTA
TCGGCGCTCGAGCTGCAGCAGGAGACGGGGATCGACCGGCGGGACAGGGC
CCAAAGGCAAGACCAAAATGGAGGTCGTTCATGCTGTGGTCGGTATAGCC
CCTCCCCTCCGAGGGGGCATTCCCTCTGCGACGTGCTAGTCTCGGCGGTC
CAGTCGGACCAGCACGGCATGTCGGAGGAGGTTTTCGAGCTGAGGTCGGA
GCGCGCTGGTCACCATGGGACGGATGCTTACGACACCCGGTGGTGCACTG
CTCAAGCTAACCCCAGGATGCCCTACACTCAGGTATAGCCCCTCCCCTCC
GAGGGGGCATTCCCTCTGCGACGTGCTAGTCTCGGCGGTCCAGTCGGACC
AGCACGGCATGTCGGAGGAGGTTTTCGAGCTGAGGTCGGAGCGCGCTGGT
CACCATGGGACGGATGCTTACGACACCCGGTGGTGCACTGCTCAAGCTAA
CCCCAGGATGCCCTACACTCAGGTGCGATTGCCGAGCGACCTCTGGAGGT
GGGAGGGTGATTGGGCGATCGACCGCTCCGGTGCCGTCGCCCCTGACGCT
CCTGGGACGGACGGAGGGGGTTGGGAGAGCTGTCCCAGAAAACCCAAGGG
TAAGTGCGATTGCCGAGCGACCTCTGGAGGTGGGAGGGTGATTGGGCGAT
CGACCGCTCCGGTGCCGTCGCCCCTGACGCTCCTGGGACGGACGGAGGGG
GTTGGGAGAGCTGTCCCAGAAAACCCAAGGGTAAGAACTACGGCAGCACC
AGTTTTGCTCCTTCCAGGTCTTTTAAGCTTTCCGATCCCATCTGGAGGCG
GCGGTGGGTGCGCCGGCGCGTCCCCTGCCGGCCACCATCAGCGCGCGGGA
CGGATTCCGCACCGAATTCGTTGCCGAAATCGGCGACGGATTCGGTGCCG
AGTTTGGCGCAGGAGTCGGCGAAGAATTTGGCTTCGGGGCGTGCAGGGAG
TTCCGGAGGAGGTAAGAGACGAACTACGGCAGCACCAGTTTTGCTCCTTC
CAGGTCTTTTAAGCTTTCCGATCCCATCTGGAGGCGGCGGTGGGTGCGCC
GGCGCGTCCCCTGCCGGCCACCATCAGCGCGCGGGACGGATTCCGCACCG
AATTCGTTGCCGAAATCGGCGACGGATTCGGTGCCGAGTTTGGCGCAGGA
GTCGGCGAAGAATTTGGCTTCGGGGCGTGCAGGGAGTTCCGGAGGAGGTA
AGAGACGCGATGCGTCAGAGTCGATGACCCGGCCCGGTCGCGAGCGCCCA
ACATCGTGGTCCAAGCAGAGGAGCGGGCGATGCGTCAGAGTCGATGACCC
GGCCCGGTCGCGAGCGCCCAACATCGTGGTCCAAGCAGAGGAGCGGCAGG
TACACGGTCATGAACCGATGCGACTGCGTGCTGGTCGTCAGTCAGTACGG
CAGCGACGTCAGCATGGAGCTCGAGCCGGGGGAGTCCCGGCCTCTTCACT
GGGCCGACGGCAGCAGGTACACGGTCATGAACCGATGCGACTGCGTGCTG
GTCGTCAGTCAGTACGGCAGCGACGTCAGCATGGAGCTCGAGCCGGGGGA
GTCCCGGCCTCTTCACTGGGCCGACGGCAGCTTGGAAGCCACCTTGTCGG
TGACCGTCGCCGCTCCTCCAGCCTCCGCCGAAGCCTCAGAAGGTGCCCTG
ATGGGATGGAGCGGACCCGTCGGCATCGGAAACATCGGAAAGTTCCCCAT
CTGCATTCGCCCGATGCCTGGGGGAGCGGCATTGCCTCTTGGAAGCCACC
TTGTCGGTGACCGTCGCCGCTCCTCCAGCCTCCGCCGAAGCCTCAGAAGG
TGCCCTGATGGGATGGAGCGGACCCGTCGGCATCGGAAACATCGGAAAGT
TCCCCATCTGCATTCGCCCGATGCCTGGGGGAGCGGCATTGCCT
back to top