mRNA_M-pyrifera_M_contig91864.21265.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91864.21265.1
Unique NamemRNA_M-pyrifera_M_contig91864.21265.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91864.21265.1 vs. uniprot
Match: K3WHW0_GLOUD (DUF676 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHW0_GLOUD)

HSP 1 Score: 52.4 bits (124), Expect = 2.300e-6
Identity = 23/60 (38.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 RMLYVLVHGNNGQPTDWNFLKERLQRIFGISALVMVSTSNSHS-THDGIEIGGLNLAIEI 177
            R + VLVHGNNG PTD++ ++  L + +G   ++++ +  +H+ T  G+E+GG  LA E+
Sbjct:   24 RHIIVLVHGNNGAPTDFDAIESALVKKYGFDDILIIKSKVNHTQTSLGVEVGGSRLASEV 83
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91864.21265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
K3WHW0_GLOUD2.300e-638.33DUF676 domain-containing protein n=1 Tax=Globispor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91864contigM-pyrifera_M_contig91864:350..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.0704489-CDS-M-pyrifera_M_contig91864:349..5231622816831.0704489-CDS-M-pyrifera_M_contig91864:349..523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91864 350..523 -
1692278203.9584823-CDS-M-pyrifera_M_contig91864:349..5231692278203.9584823-CDS-M-pyrifera_M_contig91864:349..523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91864 350..523 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.0836782-UTR-M-pyrifera_M_contig91864:523..5261622816831.0836782-UTR-M-pyrifera_M_contig91864:523..526Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91864 524..526 -
1692278203.9802225-UTR-M-pyrifera_M_contig91864:523..5261692278203.9802225-UTR-M-pyrifera_M_contig91864:523..526Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91864 524..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91864.21265.1prot_M-pyrifera_M_contig91864.21265.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91864 350..523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91864.21265.1

>prot_M-pyrifera_M_contig91864.21265.1 ID=prot_M-pyrifera_M_contig91864.21265.1|Name=mRNA_M-pyrifera_M_contig91864.21265.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
MLYVLVHGNNGQPTDWNFLKERLQRIFGISALVMVSTSNSHSTHDGIEIG
GLNLAIEI
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mRNA from alignment at M-pyrifera_M_contig91864:350..526-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91864.21265.1 ID=mRNA_M-pyrifera_M_contig91864.21265.1|Name=mRNA_M-pyrifera_M_contig91864.21265.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig91864:350..526- (Macrocystis pyrifera P11B4 male)
AGGATGCTCTACGTGCTGGTGCACGGCAACAACGGCCAGCCAACCGACTG
GAACTTCCTGAAGGAGCGCCTGCAGCGAATCTTTGGTATCTCTGCACTGG
TGATGGTCTCGACGAGCAACTCTCACAGTACACACGATGGTATTGAGATA
GGAGGTCTCAACCTGGCCATTGAGATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91864:350..526-

>mRNA_M-pyrifera_M_contig91864.21265.1 ID=mRNA_M-pyrifera_M_contig91864.21265.1|Name=mRNA_M-pyrifera_M_contig91864.21265.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig91864:350..526- (Macrocystis pyrifera P11B4 male)
ATGCTCTACGTGCTGGTGCACGGCAACAACGGCCAGCCAACCGACTGGAA
CTTCCTGAAGGAGCGCCTGCAGCGAATCTTTGGTATCTCTGCACTGGTGA
TGGTCTCGACGAGCAACTCTCACAGTACACACGATGGTATTGAGATAGGA
GGTCTCAACCTGGCCATTGAGATTATGCTCTACGTGCTGGTGCACGGCAA
CAACGGCCAGCCAACCGACTGGAACTTCCTGAAGGAGCGCCTGCAGCGAA
TCTTTGGTATCTCTGCACTGGTGATGGTCTCGACGAGCAACTCTCACAGT
ACACACGATGGTATTGAGATAGGAGGTCTCAACCTGGCCATTGAGATT
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