mRNA_M-pyrifera_M_contig91863.21264.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91863.21264.1
Unique NamemRNA_M-pyrifera_M_contig91863.21264.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91863.21264.1 vs. uniprot
Match: A0A1Y3NQB0_PIRSE (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82 n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NQB0_PIRSE)

HSP 1 Score: 56.6 bits (135), Expect = 9.510e-8
Identity = 26/73 (35.62%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    4 YKYVIAERELTGQVLVG-------------EKHVATADKDGKIRVSMLPQTYCIKSFCLGHEGFVSRLAAISD 183
            Y+Y + + E  G++++G             EK+V T+D+D KIR++  P+TY IK+FCLGH+ ++S++  I +
Sbjct:  109 YRYSVDDSEENGKLMLGHVSMLTDILLSKDEKYVITSDRDEKIRITNYPKTYIIKTFCLGHKEYISKMHFIPN 181          
BLAST of mRNA_M-pyrifera_M_contig91863.21264.1 vs. uniprot
Match: A0A1S8W9L8_9FUNG (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82 n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W9L8_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 1.790e-7
Identity = 26/73 (35.62%), Postives = 41/73 (56.16%), Query Frame = 1
Query:    4 YKYVIAERELTGQVLVGE-------------KHVATADKDGKIRVSMLPQTYCIKSFCLGHEGFVSRLAAISD 183
            Y+Y++ + E   ++++G              KH+ TAD+D KIRVS  P  + I  FCLGHE F+SR+  + +
Sbjct:  133 YRYIVDDPEKQAELILGHVSMLTDVLWSHDGKHILTADRDEKIRVSKYPHAFDIVEFCLGHEQFISRMILLPE 205          
BLAST of mRNA_M-pyrifera_M_contig91863.21264.1 vs. uniprot
Match: UPI001B7F6236 (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 isoform X1 n=2 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7F6236)

HSP 1 Score: 55.8 bits (133), Expect = 1.800e-7
Identity = 30/69 (43.48%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    4 YKYVIAERELTGQVLVGE-------------KHVATADKDGKIRVSMLPQTYCIKSFCLGHEGFVSRLA 171
            Y + I+E    GQ+ +G              +HV TAD+D KIRVS+L Q Y I++FCLGH  FVS L+
Sbjct:  116 YSFSISEPHSPGQLQLGHLSMLLAVAVSPDSRHVITADRDEKIRVSLLEQPYVIEAFCLGHREFVSELS 184          
BLAST of mRNA_M-pyrifera_M_contig91863.21264.1 vs. uniprot
Match: A0A1S8W9L4_9FUNG (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82 n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W9L4_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 1.830e-7
Identity = 26/73 (35.62%), Postives = 41/73 (56.16%), Query Frame = 1
Query:    4 YKYVIAERELTGQVLVGE-------------KHVATADKDGKIRVSMLPQTYCIKSFCLGHEGFVSRLAAISD 183
            Y+Y++ + E   ++++G              KH+ TAD+D KIRVS  P  + I  FCLGHE F+SR+  + +
Sbjct:  133 YRYIVDDPEKQAELILGHVSMLTDVLWSHDGKHILTADRDEKIRVSKYPHAFDIVEFCLGHEQFISRMILLPE 205          
BLAST of mRNA_M-pyrifera_M_contig91863.21264.1 vs. uniprot
Match: A0A1V4JCF4_PATFA (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 n=5 Tax=Neognathae TaxID=8825 RepID=A0A1V4JCF4_PATFA)

HSP 1 Score: 55.5 bits (132), Expect = 2.480e-7
Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 1
Query:    4 YKYVIAERELTGQVLVG-------------EKHVATADKDGKIRVSMLPQTYCIKSFCLGHEGFVSRLAAISD 183
            Y Y I E +  G++ +G             ++++ TAD+D KIRVS+    YCI S+CLGHE FVS++  I +
Sbjct:  140 YSYSITEPQADGKLELGHLSLLLDVALSPDDQYILTADRDEKIRVSLAKAPYCIVSYCLGHEEFVSKILVIPN 212          
BLAST of mRNA_M-pyrifera_M_contig91863.21264.1 vs. uniprot
Match: UPI00112B4DF6 (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 isoform X1 n=6 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112B4DF6)

HSP 1 Score: 54.3 bits (129), Expect = 6.330e-7
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 1
Query:    4 YKYVIAERELTGQVLVG-------------EKHVATADKDGKIRVSMLPQTYCIKSFCLGHEGFVSRLAAISD 183
            Y + IAE +  GQ+ +G             +K++ TAD+D KIRVS+L   + I SFCLGH  FVSR+  + +
Sbjct:  125 YSFAIAEPQKKGQLELGHLSMLLDVAVSPDDKYIITADRDEKIRVSLLKAPHNIASFCLGHREFVSRILVLPN 197          
BLAST of mRNA_M-pyrifera_M_contig91863.21264.1 vs. uniprot
Match: F2UMC8_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UMC8_SALR5)

HSP 1 Score: 53.9 bits (128), Expect = 8.660e-7
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1
Query:   70 TADKDGKIRVSMLPQTYCIKSFCLGHEGFVSRLAAISD 183
            TAD+DGKIR+S LP  +CI +FCLGH  FVS +   +D
Sbjct:  174 TADRDGKIRISRLPDAFCIDAFCLGHTEFVSAITGTAD 211          
BLAST of mRNA_M-pyrifera_M_contig91863.21264.1 vs. uniprot
Match: A0A067QVS8_ZOONE (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wuho n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067QVS8_ZOONE)

HSP 1 Score: 53.1 bits (126), Expect = 1.620e-6
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   55 EKHVATADKDGKIRVSMLPQTYCIKSFCLGHEGFVSRLAAISDTRLV 195
            EK++ T D+D KIRVS  P TY IKS+CLGH+ F++ L+ +   + V
Sbjct:  156 EKYIITCDRDEKIRVSQYPNTYNIKSYCLGHKEFITGLSLLPADKTV 202          
BLAST of mRNA_M-pyrifera_M_contig91863.21264.1 vs. uniprot
Match: A0A7S0R3V3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0R3V3_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 1.970e-6
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1
Query:   58 KHVATADKDGKIRVSMLPQ-----TYCIKSFCLGHEGFVSRLA 171
            KHVAT DKDG++RVS+LPQ      Y I++FCLGH+ F +  A
Sbjct:   57 KHVATCDKDGRVRVSVLPQEPLKGAYEIQAFCLGHQNFATSAA 99          
BLAST of mRNA_M-pyrifera_M_contig91863.21264.1 vs. uniprot
Match: UPI0009A2BBC9 (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A2BBC9)

HSP 1 Score: 52.8 bits (125), Expect = 2.210e-6
Identity = 28/69 (40.58%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    4 YKYVIAERELTGQVLVG-------------EKHVATADKDGKIRVSMLPQTYCIKSFCLGHEGFVSRLA 171
            Y + I + +  GQ+ +G             +++V TAD+D KIRVS+L Q Y I++FCLGH  FVS+L+
Sbjct:  125 YSFSINKPDSPGQLQLGHLSMLLAVAVSPDDRYVITADRDEKIRVSLLEQPYIIEAFCLGHREFVSQLS 193          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91863.21264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y3NQB0_PIRSE9.510e-835.62tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
A0A1S8W9L8_9FUNG1.790e-735.62tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
UPI001B7F62361.800e-743.48tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
A0A1S8W9L4_9FUNG1.830e-735.62tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
A0A1V4JCF4_PATFA2.480e-738.36tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
UPI00112B4DF66.330e-739.73tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
F2UMC8_SALR58.660e-757.89Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A067QVS8_ZOONE1.620e-648.94tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
A0A7S0R3V3_9CHLO1.970e-655.81Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
UPI0009A2BBC92.210e-640.58tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91863contigM-pyrifera_M_contig91863:575..772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score60.8
Seed ortholog evalue2.7e-07
Seed eggNOG ortholog7260.FBpp0254375
Preferred namewuho
KEGG koko:K15443
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001673,GO:0001674,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0008150,GO:0009987,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034708,GO:0043073,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043527,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0048232,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0051704,GO:1902494,GO:1990234
EggNOG free text desc.Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Required during gametogenesis
EggNOG OGs38GWF@33154,3BDQ2@33208,3D1ZJ@33213,3SMEP@50557,41ZGU@6656,44Y0W@7147,45WF4@7214,KOG3914@1,KOG3914@2759
COG Functional cat.A
Best tax levelDrosophilidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.032597-CDS-M-pyrifera_M_contig91863:574..7721622816831.032597-CDS-M-pyrifera_M_contig91863:574..772Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91863 575..772 +
1692278203.9407725-CDS-M-pyrifera_M_contig91863:574..7721692278203.9407725-CDS-M-pyrifera_M_contig91863:574..772Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91863 575..772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91863.21264.1prot_M-pyrifera_M_contig91863.21264.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91863 575..772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91863.21264.1

>prot_M-pyrifera_M_contig91863.21264.1 ID=prot_M-pyrifera_M_contig91863.21264.1|Name=mRNA_M-pyrifera_M_contig91863.21264.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
CYKYVIAERELTGQVLVGEKHVATADKDGKIRVSMLPQTYCIKSFCLGHE
GFVSRLAAISDTRLVS
back to top

mRNA from alignment at M-pyrifera_M_contig91863:575..772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91863.21264.1 ID=mRNA_M-pyrifera_M_contig91863.21264.1|Name=mRNA_M-pyrifera_M_contig91863.21264.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig91863:575..772+ (Macrocystis pyrifera P11B4 male)
TGTTATAAGTATGTTATCGCAGAGAGAGAGCTGACGGGCCAGGTGCTGGT TGGAGAAAAGCATGTGGCCACGGCAGACAAGGACGGTAAGATCAGGGTCT CCATGCTGCCACAGACCTATTGCATCAAGTCCTTCTGCCTTGGCCACGAG GGCTTCGTCAGTCGCCTCGCGGCAATCTCCGATACTCGCTTGGTCTCT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig91863:575..772+

>mRNA_M-pyrifera_M_contig91863.21264.1 ID=mRNA_M-pyrifera_M_contig91863.21264.1|Name=mRNA_M-pyrifera_M_contig91863.21264.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig91863:575..772+ (Macrocystis pyrifera P11B4 male)
TGTTATAAGTATGTTATCGCAGAGAGAGAGCTGACGGGCCAGGTGCTGGT
TGGAGAAAAGCATGTGGCCACGGCAGACAAGGACGGTAAGATCAGGGTCT
CCATGCTGCCACAGACCTATTGCATCAAGTCCTTCTGCCTTGGCCACGAG
GGCTTCGTCAGTCGCCTCGCGGCAATCTCCGATACTCGCTTGGTCTCTTG
TTATAAGTATGTTATCGCAGAGAGAGAGCTGACGGGCCAGGTGCTGGTTG
GAGAAAAGCATGTGGCCACGGCAGACAAGGACGGTAAGATCAGGGTCTCC
ATGCTGCCACAGACCTATTGCATCAAGTCCTTCTGCCTTGGCCACGAGGG
CTTCGTCAGTCGCCTCGCGGCAATCTCCGATACTCGCTTGGTCTCT
back to top