mRNA_M-pyrifera_M_contig91771.21253.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91771.21253.1
Unique NamemRNA_M-pyrifera_M_contig91771.21253.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91771.21253.1 vs. uniprot
Match: A0A7S4I7R0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I7R0_9EUKA)

HSP 1 Score: 115 bits (288), Expect = 8.910e-31
Identity = 52/94 (55.32%), Postives = 75/94 (79.79%), Query Frame = 1
Query:   55 VVKLNVGGVRYETTWATLACRGSNALSSLVEHVFENRMTATIDNEGFIFIDRCGTTFRGVLNYLRTGDLVPYPGTTRAQILQELDFFSIALQEE 336
            +VKLNVGG R+ TT++TLA  G NAL++++++V   R+T+T+D  G++FIDRCGTTF GVL+YLR+G ++P  G TR Q++ ELD+FSI + EE
Sbjct:   16 IVKLNVGGTRFMTTYSTLAAHGKNALTAMLDNVNSGRVTSTVDESGYLFIDRCGTTFYGVLDYLRSGIIIPPNGITRQQLMIELDYFSINIVEE 109          
BLAST of mRNA_M-pyrifera_M_contig91771.21253.1 vs. uniprot
Match: A0A7S4HGT9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HGT9_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 1.190e-15
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   55 VVKLNVGGVRYETTWATLACRGSNALSSLVEHVFENRMTATIDNEGFIFIDRCGTTFRGVLNYLRTGDLVPYPGTTRAQILQELDFFSIALQEEIM 342
            +VKLNVGG    TT  TL  RG+N  S+L++      M +T D  G  FIDR GT F  +L++LRTG L    G +RA +L+E +++SIAL E  M
Sbjct:   11 IVKLNVGGTTIHTTSQTLLQRGTNFFSALLD----GSMDSTKDETGAYFIDRNGTLFEPILDFLRTGKLFVISGISRAAVLEEAEYYSIALPESEM 102          
BLAST of mRNA_M-pyrifera_M_contig91771.21253.1 vs. uniprot
Match: A0A7S4IT82_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IT82_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 1.990e-15
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   55 VVKLNVGGVRYETTWATLACRGSNALSSLVEHVFENRMTATIDNEGFIFIDRCGTTFRGVLNYLRTGDLVPYPGTTRAQILQELDFFSIALQEEIMP 345
            ++KLNVGGV+Y T  +TL  +G N  + L+++   N +    D EG++FIDR G  FR VLNYLRTG L        AQ+  ELDF+ +   +E  P
Sbjct:   37 LIKLNVGGVKYITARSTLFSKGENFFTVLLDNDQGNGVPCVRDEEGYVFIDRDGELFRHVLNYLRTGKLYKPDNLPTAQLELELDFYQVKRNQEKSP 133          
BLAST of mRNA_M-pyrifera_M_contig91771.21253.1 vs. uniprot
Match: M0QSN1_ACACA (K+ channel tetramerisation subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=M0QSN1_ACACA)

HSP 1 Score: 79.0 bits (193), Expect = 9.140e-15
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 1
Query:   55 VVKLNVGGVRYETTWATLACRGSNALSSLVEHVFENRMTATI-DNEGFIFIDRCGTTFRGVLNYLRTGDLVPYPGTTRAQILQELDFFSIAL 327
            +VKLN+GGV+YETT  TL  RG N  ++L  H+F     AT+ D EG+ FIDR G  F+ +L+YLRTG+L   PG ++  + +E  F+ I L
Sbjct:  308 IVKLNIGGVKYETTVGTLVSRGDNFFTTLFSHMF-----ATLKDEEGYYFIDRDGEYFKPLLSYLRTGELRVPPGMSKMCVEREAHFYLIDL 394          
BLAST of mRNA_M-pyrifera_M_contig91771.21253.1 vs. uniprot
Match: M0QSU0_ACACA (K+ channel tetramerisation subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=M0QSU0_ACACA)

HSP 1 Score: 76.3 bits (186), Expect = 2.350e-14
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   52 DVVKLNVGGVRYETTWATLACRGSNALSSLVEHVFENRMTATIDNEGFIFIDRCGTTFRGVLNYLRTGDLVPYPGTTRAQILQELDFFSIALQEEIMP 345
            +VV+LNVGGV Y TT ATL  RG N  + L++    +R  AT D +G +F+DR G  F  VL++LRTG LV  PG  R+ +  E +F+ I L  +  P
Sbjct:   52 EVVRLNVGGVVYVTTAATLRSRGENFFTGLLDR---SREWATHDGDGALFVDRNGHHFGPVLDFLRTGRLVVPPGMDRSAVEAECNFYLIELPADARP 146          
BLAST of mRNA_M-pyrifera_M_contig91771.21253.1 vs. uniprot
Match: A0A6B2LII9_9EUKA (BTB domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LII9_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 3.310e-14
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   52 DVVKLNVGGVRYETTWATLACRGSNALSSLVEHVFENRMTATIDNEGFIFIDRCGTTFRGVLNYLRTGDLVPYPGTTRAQILQELDFFSI 321
            ++VK NVGG R+ T+++T+  +G N LS LV++     M+   D +G++FIDR G  F+ +L+YLRT +L      T  Q+L +LD++ I
Sbjct:   13 ELVKFNVGGKRFLTSYSTVTAKGENFLSRLVDYHKRGDMSVGTDEKGYLFIDRNGEVFQVILDYLRTNELFVNGNVTVRQVLCDLDYYQI 102          
BLAST of mRNA_M-pyrifera_M_contig91771.21253.1 vs. uniprot
Match: A0A6B2LBT1_9EUKA (BTB domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LBT1_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 1.550e-12
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   64 LNVGGVRYETTWATLACRGSNALSSLVEHVFENRMTATIDNEGFIFIDRCGTTFRGVLNYLRTGDLVPYPGTTRAQILQELDFFSIAL 327
            +N+GG ++ TT  TL   GSN  S L E   E  +    D EGFIFIDR GT FR +LNYLRTG LV  P   ++ I+ E +F+SI L
Sbjct:    1 MNIGGEKFYTTKETLCHLGSNFFSCLFE---EKSVPVIKDEEGFIFIDRDGTLFRPLLNYLRTGTLVVNPENLQS-IIVEAEFYSIDL 84          
BLAST of mRNA_M-pyrifera_M_contig91771.21253.1 vs. uniprot
Match: UPI0009E36DA2 (BTB/POZ domain-containing protein KCTD6-like isoform X2 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E36DA2)

HSP 1 Score: 66.2 bits (160), Expect = 3.560e-11
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 1
Query:   28 EATKNYKKDVVKLNVGGVRYETTWATLACRGSNALSSLVEHVFENRMTATIDNEGFIFIDRCGTTFRGVLNYLRTGDL-VPYPGTTRAQILQELDFFSI 321
            EA KN+   +VKLNVGG  + T+ ATL    +   +S++  +F  R       +G  FIDR GT FR +LNYLRTG L VP     R ++L E  F+ I
Sbjct:   48 EAEKNHFPKMVKLNVGGHLFSTSLATL----TKDPASMLHAMFSGRFDTKPGEDGSYFIDRDGTHFRYILNYLRTGQLIVPEDKVLRKELLAEAQFYQI 142          
BLAST of mRNA_M-pyrifera_M_contig91771.21253.1 vs. uniprot
Match: UPI0009E19366 (BTB/POZ domain-containing protein KCTD21-like isoform X1 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E19366)

HSP 1 Score: 67.4 bits (163), Expect = 4.300e-11
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   28 EATKNYKKDVVKLNVGGVRYETTWATLACRGSNALSSLVEHVFENRMTATIDNEGFIFIDRCGTTFRGVLNYLRTGDL-VPYPGTTRAQILQELDFFSI 321
            EA KN+   +VKLNVGG  + T+ ATL    +   +S++  +F  R       +G  FIDR GT FR +LNYLRTG L VP     R ++L E +F+ I
Sbjct:   48 EAEKNHFPKMVKLNVGGHLFSTSLATL----TKDPASMLHAMFSGRFDTKPSGDGSYFIDRDGTHFRYILNYLRTGQLLVPKDEIIRVELLAEAEFYQI 142          
BLAST of mRNA_M-pyrifera_M_contig91771.21253.1 vs. uniprot
Match: M0QSP9_ACACA (K+ channel tetramerisation subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=M0QSP9_ACACA)

HSP 1 Score: 67.8 bits (164), Expect = 7.330e-11
Identity = 40/90 (44.44%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   55 VVKLNVGGVRYETTWATLACRGSNALSSLVEHVFENRMTATIDNEGFIFIDRCGTTFRGVLNYLRTGDL-VPYPGTTRAQILQELDFFSI 321
            +VKLNVGG +Y TT ATL      A  SL+E +F N      D EG  FIDR GT F  +LN+LR G + +P  GT    +L+E  F+ +
Sbjct:   60 IVKLNVGGQKYTTTVATLR----RARGSLLEAMFSNTSIPAQDEEGAYFIDRDGTFFSLILNFLRDGSVELPTDGTVLRAVLREAQFYQL 145          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91771.21253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4I7R0_9EUKA8.910e-3155.32Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A7S4HGT9_9EUKA1.190e-1545.83Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A7S4IT82_9EUKA1.990e-1543.30Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
M0QSN1_ACACA9.140e-1546.74K+ channel tetramerisation subfamily protein n=1 T... [more]
M0QSU0_ACACA2.350e-1444.90K+ channel tetramerisation subfamily protein n=1 T... [more]
A0A6B2LII9_9EUKA3.310e-1440.00BTB domain-containing protein n=1 Tax=Arcella inte... [more]
A0A6B2LBT1_9EUKA1.550e-1248.86BTB domain-containing protein n=1 Tax=Arcella inte... [more]
UPI0009E36DA23.560e-1142.42BTB/POZ domain-containing protein KCTD6-like isofo... [more]
UPI0009E193664.300e-1142.42BTB/POZ domain-containing protein KCTD21-like isof... [more]
M0QSP9_ACACA7.330e-1144.44K+ channel tetramerisation subfamily protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91771contigM-pyrifera_M_contig91771:357..701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score68.9
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog7370.XP_005187594.1
KEGG koko:K15074
Hectar predicted targeting categoryother localisation
EggNOG free text desc.It is involved in the biological process described with protein homooligomerization
EggNOG OGs38GB9@33154,3BCFW@33208,3CWYQ@33213,3SFN2@50557,41TCM@6656,44ZV8@7147,KOG2716@1,KOG2716@2759
Ec32 ortholog descriptionBTB/POZ-like
Ec32 orthologEc-02_004350.1
COG Functional cat.P
Best tax levelDiptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size345
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.4416146-CDS-M-pyrifera_M_contig91771:356..6771622816830.4416146-CDS-M-pyrifera_M_contig91771:356..677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91771 357..677 -
1692278203.7009933-CDS-M-pyrifera_M_contig91771:356..6771692278203.7009933-CDS-M-pyrifera_M_contig91771:356..677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91771 357..677 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.4527617-UTR-M-pyrifera_M_contig91771:677..7011622816830.4527617-UTR-M-pyrifera_M_contig91771:677..701Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91771 678..701 -
1692278203.7229192-UTR-M-pyrifera_M_contig91771:677..7011692278203.7229192-UTR-M-pyrifera_M_contig91771:677..701Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91771 678..701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91771.21253.1prot_M-pyrifera_M_contig91771.21253.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91771 357..677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91771.21253.1

>prot_M-pyrifera_M_contig91771.21253.1 ID=prot_M-pyrifera_M_contig91771.21253.1|Name=mRNA_M-pyrifera_M_contig91771.21253.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MEATKNYKKDVVKLNVGGVRYETTWATLACRGSNALSSLVEHVFENRMTA
TIDNEGFIFIDRCGTTFRGVLNYLRTGDLVPYPGTTRAQILQELDFFSIA
LQEEIMP
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mRNA from alignment at M-pyrifera_M_contig91771:357..701-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91771.21253.1 ID=mRNA_M-pyrifera_M_contig91771.21253.1|Name=mRNA_M-pyrifera_M_contig91771.21253.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig91771:357..701- (Macrocystis pyrifera P11B4 male)
ACGACTAAAAGGACGAAAGAGGCAATGGAGGCAACAAAGAACTACAAAAA AGACGTGGTGAAGCTCAACGTTGGAGGTGTCCGCTATGAGACCACCTGGG CGACGCTGGCTTGCCGAGGAAGCAATGCTCTGTCGAGTTTGGTCGAGCAC GTCTTCGAGAACCGAATGACGGCCACCATCGACAACGAGGGCTTCATTTT CATCGACAGATGTGGGACCACGTTCCGTGGTGTTCTCAATTACCTGAGGA CAGGCGACTTGGTGCCCTACCCAGGCACCACTCGAGCTCAAATCCTGCAA GAGCTCGACTTCTTCTCCATCGCTCTCCAAGAGGAGATCATGCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91771:357..701-

>mRNA_M-pyrifera_M_contig91771.21253.1 ID=mRNA_M-pyrifera_M_contig91771.21253.1|Name=mRNA_M-pyrifera_M_contig91771.21253.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig91771:357..701- (Macrocystis pyrifera P11B4 male)
ATGGAGGCAACAAAGAACTACAAAAAAGACGTGGTGAAGCTCAACGTTGG
AGGTGTCCGCTATGAGACCACCTGGGCGACGCTGGCTTGCCGAGGAAGCA
ATGCTCTGTCGAGTTTGGTCGAGCACGTCTTCGAGAACCGAATGACGGCC
ACCATCGACAACGAGGGCTTCATTTTCATCGACAGATGTGGGACCACGTT
CCGTGGTGTTCTCAATTACCTGAGGACAGGCGACTTGGTGCCCTACCCAG
GCACCACTCGAGCTCAAATCCTGCAAGAGCTCGACTTCTTCTCCATCGCT
CTCCAAGAGGAGATCATGCCTATGGAGGCAACAAAGAACTACAAAAAAGA
CGTGGTGAAGCTCAACGTTGGAGGTGTCCGCTATGAGACCACCTGGGCGA
CGCTGGCTTGCCGAGGAAGCAATGCTCTGTCGAGTTTGGTCGAGCACGTC
TTCGAGAACCGAATGACGGCCACCATCGACAACGAGGGCTTCATTTTCAT
CGACAGATGTGGGACCACGTTCCGTGGTGTTCTCAATTACCTGAGGACAG
GCGACTTGGTGCCCTACCCAGGCACCACTCGAGCTCAAATCCTGCAAGAG
CTCGACTTCTTCTCCATCGCTCTCCAAGAGGAGATCATGCCT
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