mRNA_M-pyrifera_M_contig91712.21248.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91712.21248.1
Unique NamemRNA_M-pyrifera_M_contig91712.21248.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91712.21248.1 vs. uniprot
Match: A0A061RXE6_9CHLO (Plexin A n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RXE6_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 1.510e-8
Identity = 47/127 (37.01%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:  103 VGGRMCGNPVIRDSMKLLSCIAPAGVGKHVDV-VVSWRNNNFLSIANLSILST--SYRSPQLQSISPPFGIPVLGNESTLLLSGSEFGPASLEAPLQVLVDGMECGEVKRLSDQLVQCSRVPMGVGV 474
            VGGR CG      +  L  C+ P GVG+ +DV VV++ +    + +  S  +T  SY  P L+SI+P  G    G   TL  +GS FGP++LE P +V      C   +RLSD  + C+  P   GV
Sbjct:  158 VGGRSCGALQCLAAGSL-ECVLPGGVGRALDVSVVTFYDAGGANTSTGSRPNTLFSYEDPALESIAPMQGRSTGGTHVTL--TGSNFGPSTLELPPKVYFGNSTCLRPERLSDSTIVCATPPHSEGV 281
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BLAST of mRNA_M-pyrifera_M_contig91712.21248.1 vs. uniprot
Match: A0A061SK47_9CHLO (Plexin A n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SK47_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 1.580e-8
Identity = 47/127 (37.01%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:  103 VGGRMCGNPVIRDSMKLLSCIAPAGVGKHVDV-VVSWRNNNFLSIANLSILST--SYRSPQLQSISPPFGIPVLGNESTLLLSGSEFGPASLEAPLQVLVDGMECGEVKRLSDQLVQCSRVPMGVGV 474
            VGGR CG      +  L  C+ P GVG+ +DV VV++ +    + +  S  +T  SY  P L+SI+P  G    G   TL  +GS FGP++LE P +V      C   +RLSD  + C+  P   GV
Sbjct:  158 VGGRSCGALQCLAAGSL-ECVLPGGVGRALDVSVVTFYDAGGANTSTGSRPNTLFSYEDPALESIAPMQGRSTGGTHVTL--TGSNFGPSTLELPPKVYFGNSTCLRPERLSDSTIVCATPPHSEGV 281
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91712.21248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A061RXE6_9CHLO1.510e-837.01Plexin A n=1 Tax=Tetraselmis sp. GSL018 TaxID=5827... [more]
A0A061SK47_9CHLO1.580e-837.01Plexin A n=1 Tax=Tetraselmis sp. GSL018 TaxID=5827... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91712contigM-pyrifera_M_contig91712:17..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size504
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.278452-CDS-M-pyrifera_M_contig91712:16..5201622816830.278452-CDS-M-pyrifera_M_contig91712:16..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91712 17..520 +
1692278203.630084-CDS-M-pyrifera_M_contig91712:16..5201692278203.630084-CDS-M-pyrifera_M_contig91712:16..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91712 17..520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91712.21248.1prot_M-pyrifera_M_contig91712.21248.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91712 17..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91712.21248.1

>prot_M-pyrifera_M_contig91712.21248.1 ID=prot_M-pyrifera_M_contig91712.21248.1|Name=mRNA_M-pyrifera_M_contig91712.21248.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
MVVSTPLAAGGGSELRISADMSIVAAAGGVERVEVGGRMCGNPVIRDSMK
LLSCIAPAGVGKHVDVVVSWRNNNFLSIANLSILSTSYRSPQLQSISPPF
GIPVLGNESTLLLSGSEFGPASLEAPLQVLVDGMECGEVKRLSDQLVQCS
RVPMGVGVKRSVVVVSGG
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mRNA from alignment at M-pyrifera_M_contig91712:17..520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91712.21248.1 ID=mRNA_M-pyrifera_M_contig91712.21248.1|Name=mRNA_M-pyrifera_M_contig91712.21248.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig91712:17..520+ (Macrocystis pyrifera P11B4 male)
ATGGTTGTGAGTACGCCATTGGCAGCAGGTGGGGGTAGTGAGTTGCGAAT
TTCTGCTGACATGAGTATTGTAGCTGCAGCAGGTGGGGTGGAGAGAGTGG
AAGTTGGGGGCAGGATGTGTGGAAATCCTGTGATACGTGATTCTATGAAG
TTACTGTCATGCATCGCTCCCGCAGGAGTCGGGAAACATGTTGATGTGGT
TGTGTCTTGGAGGAACAACAACTTTTTGTCCATTGCCAATCTGAGCATCC
TTTCAACATCATATCGATCTCCTCAATTGCAATCAATCTCACCGCCATTC
GGCATCCCAGTGCTTGGGAATGAATCGACCCTCTTGCTCTCCGGATCTGA
ATTTGGACCAGCGTCGTTGGAAGCACCGCTACAGGTTCTTGTTGATGGGA
TGGAATGTGGAGAGGTGAAACGTCTTTCTGATCAGCTCGTGCAGTGCTCC
CGTGTGCCAATGGGTGTTGGTGTGAAACGAAGTGTGGTGGTGGTGAGTGG
AGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91712:17..520+

>mRNA_M-pyrifera_M_contig91712.21248.1 ID=mRNA_M-pyrifera_M_contig91712.21248.1|Name=mRNA_M-pyrifera_M_contig91712.21248.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig91712:17..520+ (Macrocystis pyrifera P11B4 male)
ATGGTTGTGAGTACGCCATTGGCAGCAGGTGGGGGTAGTGAGTTGCGAAT
TTCTGCTGACATGAGTATTGTAGCTGCAGCAGGTGGGGTGGAGAGAGTGG
AAGTTGGGGGCAGGATGTGTGGAAATCCTGTGATACGTGATTCTATGAAG
TTACTGTCATGCATCGCTCCCGCAGGAGTCGGGAAACATGTTGATGTGGT
TGTGTCTTGGAGGAACAACAACTTTTTGTCCATTGCCAATCTGAGCATCC
TTTCAACATCATATCGATCTCCTCAATTGCAATCAATCTCACCGCCATTC
GGCATCCCAGTGCTTGGGAATGAATCGACCCTCTTGCTCTCCGGATCTGA
ATTTGGACCAGCGTCGTTGGAAGCACCGCTACAGGTTCTTGTTGATGGGA
TGGAATGTGGAGAGGTGAAACGTCTTTCTGATCAGCTCGTGCAGTGCTCC
CGTGTGCCAATGGGTGTTGGTGTGAAACGAAGTGTGGTGGTGGTGAGTGG
AGGGATGGTTGTGAGTACGCCATTGGCAGCAGGTGGGGGTAGTGAGTTGC
GAATTTCTGCTGACATGAGTATTGTAGCTGCAGCAGGTGGGGTGGAGAGA
GTGGAAGTTGGGGGCAGGATGTGTGGAAATCCTGTGATACGTGATTCTAT
GAAGTTACTGTCATGCATCGCTCCCGCAGGAGTCGGGAAACATGTTGATG
TGGTTGTGTCTTGGAGGAACAACAACTTTTTGTCCATTGCCAATCTGAGC
ATCCTTTCAACATCATATCGATCTCCTCAATTGCAATCAATCTCACCGCC
ATTCGGCATCCCAGTGCTTGGGAATGAATCGACCCTCTTGCTCTCCGGAT
CTGAATTTGGACCAGCGTCGTTGGAAGCACCGCTACAGGTTCTTGTTGAT
GGGATGGAATGTGGAGAGGTGAAACGTCTTTCTGATCAGCTCGTGCAGTG
CTCCCGTGTGCCAATGGGTGTTGGTGTGAAACGAAGTGTGGTGGTGGTGA
GTGGAGGG
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