mRNA_M-pyrifera_M_contig91710.21247.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91710.21247.1
Unique NamemRNA_M-pyrifera_M_contig91710.21247.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91710.21247.1 vs. uniprot
Match: A0A7C7V0G3_9PLAN (Tetratricopeptide repeat protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7V0G3_9PLAN)

HSP 1 Score: 65.5 bits (158), Expect = 1.040e-8
Identity = 38/121 (31.40%), Postives = 66/121 (54.55%), Query Frame = 1 
Query:   49 NVSTARQERADEAIAEFERRRDKAQFTAALARWKEGDLPECRVTLDEIIKRNPDHTGARLLLADLLLVEKQPQLAIPHVQSVLEREPENPVALHTSGLVHEALGNTAASLEQYKRATELAP 411
            +++  R+ R + A   FE+ R  A++  A  +W+EGD   C   L+ +++RNPD+  AR+LLA++LL + QP+ A   +   +    ++P   +T  L  E LG+   +   Y+RA    P
Sbjct:   51 DLAEPRRARHEAAATTFEQSRAGAEYREAEQQWEEGDAAGCIQRLERLLERNPDYWEARVLLAEVLLTQDQPERARQWLLPAIRDHSDHPRLHYTMALALEKLGHAEEANAFYRRAMAALP 171
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BLAST of mRNA_M-pyrifera_M_contig91710.21247.1 vs. uniprot
Match: A0A7C4R0Q9_9DELT (Tetratricopeptide repeat protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7C4R0Q9_9DELT)

HSP 1 Score: 55.8 bits (133), Expect = 2.430e-5
Identity = 31/94 (32.98%), Postives = 50/94 (53.19%), Query Frame = 1 
Query:  133 ALARWKEGDLPECRVTLDEIIKRNPDHTGARLLLADLLLVEKQPQLAIPHVQSVLEREPENPVALHTSGLVHEALGNTAASLEQYKRATELAPE 414
            A  R+  G+      T  + ++R P +  AR  LA  L  + Q + A+ H+ S+LER+ +NP AL+  G +    G+ A +LE + RA   AP+
Sbjct:  494 AALRYAAGEYAAAAATWGQALERYPGYPEARYRLALALFRDGQSRKALEHLDSLLERDAQNPYALNLRGKIRFETGDPAGALEDWARALAAAPD 587
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91710.21247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7C7V0G3_9PLAN1.040e-831.40Tetratricopeptide repeat protein n=1 Tax=Planctomy... [more]
A0A7C4R0Q9_9DELT2.430e-532.98Tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91710contigM-pyrifera_M_contig91710:37..774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size738
Cds size738
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.2469466-CDS-M-pyrifera_M_contig91710:36..7741622816830.2469466-CDS-M-pyrifera_M_contig91710:36..774Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91710 37..774 +
1692278203.6184494-CDS-M-pyrifera_M_contig91710:36..7741692278203.6184494-CDS-M-pyrifera_M_contig91710:36..774Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91710 37..774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91710.21247.1prot_M-pyrifera_M_contig91710.21247.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91710 37..774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91710.21247.1

>prot_M-pyrifera_M_contig91710.21247.1 ID=prot_M-pyrifera_M_contig91710.21247.1|Name=mRNA_M-pyrifera_M_contig91710.21247.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=246bp
MGCASNPLKKLVAPIANVSTARQERADEAIAEFERRRDKAQFTAALARWK
EGDLPECRVTLDEIIKRNPDHTGARLLLADLLLVEKQPQLAIPHVQSVLE
REPENPVALHTSGLVHEALGNTAASLEQYKRATELAPENEVFLLSYDVAV
GRPAQPSEVTQATGQVAVEEMSSPLSIESTSRAANREPWRVLLDEAEFAL
KRGDDYATRAAFDRAMRYSGDDPQIPISIGVLILRHNRPELAQEYL
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mRNA from alignment at M-pyrifera_M_contig91710:37..774+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91710.21247.1 ID=mRNA_M-pyrifera_M_contig91710.21247.1|Name=mRNA_M-pyrifera_M_contig91710.21247.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig91710:37..774+ (Macrocystis pyrifera P11B4 male)
ATGGGCTGCGCATCGAATCCACTGAAGAAACTCGTGGCACCCATTGCCAA
CGTTTCGACTGCCCGACAGGAACGCGCCGACGAGGCGATCGCCGAATTCG
AACGCCGTCGAGACAAGGCCCAATTCACGGCGGCCCTTGCTCGCTGGAAA
GAGGGTGATCTACCCGAATGCCGCGTGACGCTTGACGAAATCATCAAGCG
AAATCCCGACCACACCGGGGCTCGCTTGCTGCTTGCTGACTTGCTATTGG
TCGAAAAACAACCACAACTGGCGATCCCACACGTACAGAGTGTACTGGAG
CGGGAGCCAGAAAATCCGGTCGCACTACATACTTCAGGTCTCGTTCACGA
GGCGCTCGGAAACACCGCCGCTTCCCTGGAACAATACAAACGGGCTACCG
AACTGGCCCCTGAAAACGAGGTCTTTCTGCTCAGCTACGATGTGGCCGTA
GGAAGACCTGCACAACCAAGTGAAGTTACCCAAGCTACGGGCCAGGTCGC
CGTCGAAGAAATGAGTAGTCCTCTCTCCATCGAATCTACCAGTCGTGCGG
CCAATCGAGAGCCATGGCGTGTACTGCTCGACGAAGCCGAGTTCGCCCTC
AAAAGGGGTGATGATTATGCAACTCGTGCGGCATTTGATCGCGCCATGCG
CTATTCGGGGGACGATCCCCAGATCCCGATCTCAATCGGTGTGTTGATTC
TGCGACACAATCGCCCAGAACTCGCTCAAGAGTACCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91710:37..774+

>mRNA_M-pyrifera_M_contig91710.21247.1 ID=mRNA_M-pyrifera_M_contig91710.21247.1|Name=mRNA_M-pyrifera_M_contig91710.21247.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1476bp|location=Sequence derived from alignment at M-pyrifera_M_contig91710:37..774+ (Macrocystis pyrifera P11B4 male)
ATGGGCTGCGCATCGAATCCACTGAAGAAACTCGTGGCACCCATTGCCAA
CGTTTCGACTGCCCGACAGGAACGCGCCGACGAGGCGATCGCCGAATTCG
AACGCCGTCGAGACAAGGCCCAATTCACGGCGGCCCTTGCTCGCTGGAAA
GAGGGTGATCTACCCGAATGCCGCGTGACGCTTGACGAAATCATCAAGCG
AAATCCCGACCACACCGGGGCTCGCTTGCTGCTTGCTGACTTGCTATTGG
TCGAAAAACAACCACAACTGGCGATCCCACACGTACAGAGTGTACTGGAG
CGGGAGCCAGAAAATCCGGTCGCACTACATACTTCAGGTCTCGTTCACGA
GGCGCTCGGAAACACCGCCGCTTCCCTGGAACAATACAAACGGGCTACCG
AACTGGCCCCTGAAAACGAGGTCTTTCTGCTCAGCTACGATGTGGCCGTA
GGAAGACCTGCACAACCAAGTGAAGTTACCCAAGCTACGGGCCAGGTCGC
CGTCGAAGAAATGAGTAGTCCTCTCTCCATCGAATCTACCAGTCGTGCGG
CCAATCGAGAGCCATGGCGTGTACTGCTCGACGAAGCCGAGTTCGCCCTC
AAAAGGGGTGATGATTATGCAACTCGTGCGGCATTTGATCGCGCCATGCG
CTATTCGGGGGACGATCCCCAGATCCCGATCTCAATCGGTGTGTTGATTC
TGCGACACAATCGCCCAGAACTCGCTCAAGAGTACCTGATGGGCTGCGCA
TCGAATCCACTGAAGAAACTCGTGGCACCCATTGCCAACGTTTCGACTGC
CCGACAGGAACGCGCCGACGAGGCGATCGCCGAATTCGAACGCCGTCGAG
ACAAGGCCCAATTCACGGCGGCCCTTGCTCGCTGGAAAGAGGGTGATCTA
CCCGAATGCCGCGTGACGCTTGACGAAATCATCAAGCGAAATCCCGACCA
CACCGGGGCTCGCTTGCTGCTTGCTGACTTGCTATTGGTCGAAAAACAAC
CACAACTGGCGATCCCACACGTACAGAGTGTACTGGAGCGGGAGCCAGAA
AATCCGGTCGCACTACATACTTCAGGTCTCGTTCACGAGGCGCTCGGAAA
CACCGCCGCTTCCCTGGAACAATACAAACGGGCTACCGAACTGGCCCCTG
AAAACGAGGTCTTTCTGCTCAGCTACGATGTGGCCGTAGGAAGACCTGCA
CAACCAAGTGAAGTTACCCAAGCTACGGGCCAGGTCGCCGTCGAAGAAAT
GAGTAGTCCTCTCTCCATCGAATCTACCAGTCGTGCGGCCAATCGAGAGC
CATGGCGTGTACTGCTCGACGAAGCCGAGTTCGCCCTCAAAAGGGGTGAT
GATTATGCAACTCGTGCGGCATTTGATCGCGCCATGCGCTATTCGGGGGA
CGATCCCCAGATCCCGATCTCAATCGGTGTGTTGATTCTGCGACACAATC
GCCCAGAACTCGCTCAAGAGTACCTG
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