mRNA_M-pyrifera_M_contig91703.21244.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91703.21244.1
Unique NamemRNA_M-pyrifera_M_contig91703.21244.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91703.21244.1 vs. uniprot
Match: UPI001C68C35D (hypothetical protein n=1 Tax=Cylindrospermopsis raciborskii TaxID=77022 RepID=UPI001C68C35D)

HSP 1 Score: 54.3 bits (129), Expect = 4.090e-6
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   10 VSSDLASGVVSISSTFYAFAALKEDGSVITWGSSSYGGDSSLV 138
            +SS L SGV  I ST YAFAALK DGSV+TWGSS YG DSS V
Sbjct:    1 MSSRLTSGVTQIFSTGYAFAALKSDGSVVTWGSSFYGEDSSSV 43
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BLAST of mRNA_M-pyrifera_M_contig91703.21244.1 vs. uniprot
Match: A0A838WR53_9CYAN (Uncharacterized protein (Fragment) n=5 Tax=Cylindrospermopsis raciborskii TaxID=77022 RepID=A0A838WR53_9CYAN)

HSP 1 Score: 53.5 bits (127), Expect = 5.750e-6
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   10 VSSDLASGVVSISSTFYAFAALKEDGSVITWGSSSYGGDSSLV 138
            +SS L SGV  I S  YAFAALK DGSV+TWG SS GGDSS V
Sbjct:    1 MSSRLTSGVTQIFSNVYAFAALKSDGSVVTWGESSNGGDSSSV 43
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BLAST of mRNA_M-pyrifera_M_contig91703.21244.1 vs. uniprot
Match: UPI0015E0FBA8 (hypothetical protein n=1 Tax=Cylindrospermopsis raciborskii TaxID=77022 RepID=UPI0015E0FBA8)

HSP 1 Score: 57.8 bits (138), Expect = 6.730e-6
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   10 VSSDLASGVVSISSTFYAFAALKEDGSVITWGSSSYGGDSSLV 138
            +SS L SGV  I STF AFAALK DGSV+TWG S+YGGDSS V
Sbjct:    1 MSSSLTSGVTQIFSTFSAFAALKSDGSVVTWGDSNYGGDSSSV 43
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BLAST of mRNA_M-pyrifera_M_contig91703.21244.1 vs. uniprot
Match: A0A562IZM9_9GAMM (Alpha-tubulin suppressor-like RCC1 family protein n=1 Tax=Azomonas agilis TaxID=116849 RepID=A0A562IZM9_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 7.190e-5
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   10 VSSDLASGVVSISSTFYAFAALKEDGSVITWGSSSYGGDSS 132
            +SS L+SGVV I ST  AFAALK DGSV+TWG ++YGGDSS
Sbjct: 1180 ISSKLSSGVVQIFSTSSAFAALKTDGSVVTWGDATYGGDSS 1220
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91703.21244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI001C68C35D4.090e-672.09hypothetical protein n=1 Tax=Cylindrospermopsis ra... [more]
A0A838WR53_9CYAN5.750e-669.77Uncharacterized protein (Fragment) n=5 Tax=Cylindr... [more]
UPI0015E0FBA86.730e-672.09hypothetical protein n=1 Tax=Cylindrospermopsis ra... [more]
A0A562IZM9_9GAMM7.190e-570.73Alpha-tubulin suppressor-like RCC1 family protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91703contigM-pyrifera_M_contig91703:6..752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size747
Cds size747
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.1312072-CDS-M-pyrifera_M_contig91703:5..7521622816830.1312072-CDS-M-pyrifera_M_contig91703:5..752Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91703 6..752 +
1692278203.562707-CDS-M-pyrifera_M_contig91703:5..7521692278203.562707-CDS-M-pyrifera_M_contig91703:5..752Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91703 6..752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91703.21244.1prot_M-pyrifera_M_contig91703.21244.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91703 6..752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91703.21244.1

>prot_M-pyrifera_M_contig91703.21244.1 ID=prot_M-pyrifera_M_contig91703.21244.1|Name=mRNA_M-pyrifera_M_contig91703.21244.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=249bp
AAGVSSDLASGVVSISSTFYAFAALKEDGSVITWGSSSYGGDSSLVSSKL
SSGVDQVYSNKGAFAAVKNDGSVVAWGASTYGGDISVVNAKVASDVSRIF
STLSAFAALKTDGSVVTWGNADNGGSSASVVNFISSGIVQISSTDRLFIA
TNAIGNVTLWGGKEFDESPAFMRSVLTDNGFTQIAWSDGAHAIITLDGAC
VAWGSDDYGGNPRFVGSYLRFGVVQIASTSSGFVALLFDGSVVTWGGDT
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mRNA from alignment at M-pyrifera_M_contig91703:6..752+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91703.21244.1 ID=mRNA_M-pyrifera_M_contig91703.21244.1|Name=mRNA_M-pyrifera_M_contig91703.21244.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=747bp|location=Sequence derived from alignment at M-pyrifera_M_contig91703:6..752+ (Macrocystis pyrifera P11B4 male)
GCTGCAGGAGTTTCGAGCGATCTCGCTTCTGGAGTAGTATCAATCTCCTC
CACATTCTACGCGTTTGCAGCATTGAAGGAAGATGGCTCAGTGATTACCT
GGGGATCTTCCTCCTATGGTGGTGACTCATCTTTGGTGTCTTCAAAGTTG
TCAAGTGGCGTGGATCAAGTTTACTCAAACAAAGGTGCATTTGCCGCAGT
GAAAAATGATGGCAGTGTTGTAGCGTGGGGTGCATCAACGTACGGAGGTG
ACATTTCAGTAGTAAATGCCAAGGTTGCCTCTGATGTGTCCCGCATATTT
TCCACACTATCTGCATTTGCAGCTCTGAAAACAGACGGAAGCGTTGTAAC
TTGGGGGAATGCCGACAATGGCGGGTCTTCAGCATCAGTTGTTAACTTCA
TCTCTTCTGGTATCGTCCAAATCTCGAGCACAGATCGGCTTTTCATTGCC
ACAAACGCCATTGGCAACGTCACCCTTTGGGGGGGGAAAGAATTTGATGA
ATCCCCTGCTTTCATGCGTTCCGTGCTTACCGATAATGGTTTCACACAAA
TCGCATGGTCTGATGGTGCTCATGCAATTATCACTCTTGATGGTGCTTGT
GTTGCATGGGGCTCCGACGATTATGGTGGGAACCCACGCTTTGTCGGTTC
CTATCTCCGTTTCGGTGTCGTCCAAATTGCATCCACTTCATCAGGTTTTG
TTGCTCTTCTCTTTGATGGTTCTGTTGTCACTTGGGGTGGTGACACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91703:6..752+

>mRNA_M-pyrifera_M_contig91703.21244.1 ID=mRNA_M-pyrifera_M_contig91703.21244.1|Name=mRNA_M-pyrifera_M_contig91703.21244.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1494bp|location=Sequence derived from alignment at M-pyrifera_M_contig91703:6..752+ (Macrocystis pyrifera P11B4 male)
GCTGCAGGAGTTTCGAGCGATCTCGCTTCTGGAGTAGTATCAATCTCCTC
CACATTCTACGCGTTTGCAGCATTGAAGGAAGATGGCTCAGTGATTACCT
GGGGATCTTCCTCCTATGGTGGTGACTCATCTTTGGTGTCTTCAAAGTTG
TCAAGTGGCGTGGATCAAGTTTACTCAAACAAAGGTGCATTTGCCGCAGT
GAAAAATGATGGCAGTGTTGTAGCGTGGGGTGCATCAACGTACGGAGGTG
ACATTTCAGTAGTAAATGCCAAGGTTGCCTCTGATGTGTCCCGCATATTT
TCCACACTATCTGCATTTGCAGCTCTGAAAACAGACGGAAGCGTTGTAAC
TTGGGGGAATGCCGACAATGGCGGGTCTTCAGCATCAGTTGTTAACTTCA
TCTCTTCTGGTATCGTCCAAATCTCGAGCACAGATCGGCTTTTCATTGCC
ACAAACGCCATTGGCAACGTCACCCTTTGGGGGGGGAAAGAATTTGATGA
ATCCCCTGCTTTCATGCGTTCCGTGCTTACCGATAATGGTTTCACACAAA
TCGCATGGTCTGATGGTGCTCATGCAATTATCACTCTTGATGGTGCTTGT
GTTGCATGGGGCTCCGACGATTATGGTGGGAACCCACGCTTTGTCGGTTC
CTATCTCCGTTTCGGTGTCGTCCAAATTGCATCCACTTCATCAGGTTTTG
TTGCTCTTCTCTTTGATGGTTCTGTTGTCACTTGGGGTGGTGACACAGCT
GCAGGAGTTTCGAGCGATCTCGCTTCTGGAGTAGTATCAATCTCCTCCAC
ATTCTACGCGTTTGCAGCATTGAAGGAAGATGGCTCAGTGATTACCTGGG
GATCTTCCTCCTATGGTGGTGACTCATCTTTGGTGTCTTCAAAGTTGTCA
AGTGGCGTGGATCAAGTTTACTCAAACAAAGGTGCATTTGCCGCAGTGAA
AAATGATGGCAGTGTTGTAGCGTGGGGTGCATCAACGTACGGAGGTGACA
TTTCAGTAGTAAATGCCAAGGTTGCCTCTGATGTGTCCCGCATATTTTCC
ACACTATCTGCATTTGCAGCTCTGAAAACAGACGGAAGCGTTGTAACTTG
GGGGAATGCCGACAATGGCGGGTCTTCAGCATCAGTTGTTAACTTCATCT
CTTCTGGTATCGTCCAAATCTCGAGCACAGATCGGCTTTTCATTGCCACA
AACGCCATTGGCAACGTCACCCTTTGGGGGGGGAAAGAATTTGATGAATC
CCCTGCTTTCATGCGTTCCGTGCTTACCGATAATGGTTTCACACAAATCG
CATGGTCTGATGGTGCTCATGCAATTATCACTCTTGATGGTGCTTGTGTT
GCATGGGGCTCCGACGATTATGGTGGGAACCCACGCTTTGTCGGTTCCTA
TCTCCGTTTCGGTGTCGTCCAAATTGCATCCACTTCATCAGGTTTTGTTG
CTCTTCTCTTTGATGGTTCTGTTGTCACTTGGGGTGGTGACACA
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