mRNA_M-pyrifera_M_contig91628.21231.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91628.21231.1
Unique NamemRNA_M-pyrifera_M_contig91628.21231.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91628.21231.1 vs. uniprot
Match: E0XV40_9GAMM (Uncharacterized protein n=1 Tax=uncultured Chromatiales bacterium HF0200_41F04 TaxID=710740 RepID=E0XV40_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 6.100e-9
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 TSLPGDHSEREPPESISNSEVKLLSADDSVGDPM 102
            TSLPGD+SER PP+ ISNSEVK LSADDSVG PM
Sbjct:   24 TSLPGDYSERVPPDPISNSEVKPLSADDSVGGPM 57
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BLAST of mRNA_M-pyrifera_M_contig91628.21231.1 vs. uniprot
Match: E0Y013_9GAMM (Uncharacterized protein n=1 Tax=uncultured gamma proteobacterium EB000_65A11 TaxID=710972 RepID=E0Y013_9GAMM)

HSP 1 Score: 48.5 bits (114), Expect = 1.240e-6
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = -2 
Query:    3 HMGSPTLSSALSSFTSEFEMDSGGSRSLWSPGKL 104
            HMG+PTL SALSSFTSEFEM SGGS +L S  KL
Sbjct:    5 HMGTPTLPSALSSFTSEFEMGSGGSYTLLSSDKL 38
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BLAST of mRNA_M-pyrifera_M_contig91628.21231.1 vs. uniprot
Match: E7C375_9GAMM (Uncharacterized protein n=1 Tax=uncultured gamma proteobacterium HF0130_26L16 TaxID=723569 RepID=E7C375_9GAMM)

HSP 1 Score: 48.5 bits (114), Expect = 2.810e-6
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = -2 
Query:    3 GSPTLSSALSSFTSEFEMDSGGSRSLWSPGKL 98
            G PTLSSAL  FTSEF M SGG+R+LW PGKL
Sbjct:   26 GDPTLSSALCVFTSEFGMGSGGTRTLWPPGKL 57
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91628.21231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
E0XV40_9GAMM6.100e-982.35Uncharacterized protein n=1 Tax=uncultured Chromat... [more]
E0Y013_9GAMM1.240e-676.47Uncharacterized protein n=1 Tax=uncultured gamma p... [more]
E7C375_9GAMM2.810e-675.00Uncharacterized protein n=1 Tax=uncultured gamma p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91628contigM-pyrifera_M_contig91628:323..427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.4678447-CDS-M-pyrifera_M_contig91628:322..4271622816829.4678447-CDS-M-pyrifera_M_contig91628:322..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91628 323..427 +
1692278203.2003138-CDS-M-pyrifera_M_contig91628:322..4271692278203.2003138-CDS-M-pyrifera_M_contig91628:322..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91628 323..427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91628.21231.1prot_M-pyrifera_M_contig91628.21231.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91628 323..427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91628.21231.1

>prot_M-pyrifera_M_contig91628.21231.1 ID=prot_M-pyrifera_M_contig91628.21231.1|Name=mRNA_M-pyrifera_M_contig91628.21231.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=35bp
TSLPGDHSEREPPESISNSEVKLLSADDSVGDPM*
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mRNA from alignment at M-pyrifera_M_contig91628:323..427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91628.21231.1 ID=mRNA_M-pyrifera_M_contig91628.21231.1|Name=mRNA_M-pyrifera_M_contig91628.21231.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=105bp|location=Sequence derived from alignment at M-pyrifera_M_contig91628:323..427+ (Macrocystis pyrifera P11B4 male)
ACCAGTTTGCCTGGCGACCATAGCGAGCGGGAACCACCTGAATCCATCTC
GAACTCAGAAGTGAAACTGCTTAGCGCCGATGATAGTGTGGGAGATCCCA
TGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91628:323..427+

>mRNA_M-pyrifera_M_contig91628.21231.1 ID=mRNA_M-pyrifera_M_contig91628.21231.1|Name=mRNA_M-pyrifera_M_contig91628.21231.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig91628:323..427+ (Macrocystis pyrifera P11B4 male)
ACCAGTTTGCCTGGCGACCATAGCGAGCGGGAACCACCTGAATCCATCTC
GAACTCAGAAGTGAAACTGCTTAGCGCCGATGATAGTGTGGGAGATCCCA
TGTGAACCAGTTTGCCTGGCGACCATAGCGAGCGGGAACCACCTGAATCC
ATCTCGAACTCAGAAGTGAAACTGCTTAGCGCCGATGATAGTGTGGGAGA
TCCCATGTGA
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