mRNA_M-pyrifera_M_contig91553.21215.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91553.21215.1
Unique NamemRNA_M-pyrifera_M_contig91553.21215.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91553.21215.1 vs. uniprot
Match: UPI001EB047B9 (uncharacterized protein LOC124142196 n=7 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB047B9)

HSP 1 Score: 55.5 bits (132), Expect = 1.380e-6
Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 1 
Query:    1 CEACGKEFKSSGGLRLHMRSKHEGIRYSCPDCSKTFSSPSSLHRHKAV 144
            C  CGK F     L  HMRS H+G RY+C  C+K+F+S   L++HK  
Sbjct:   45 CPQCGKGFNRKDNLSRHMRSVHQGERYACDHCTKSFASNQKLNKHKCA 92
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BLAST of mRNA_M-pyrifera_M_contig91553.21215.1 vs. uniprot
Match: A0A8D9EXC3_9HEMI (Zinc finger protein 2 (Fragment) n=2 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9EXC3_9HEMI)

HSP 1 Score: 52.4 bits (124), Expect = 4.010e-6
Identity = 22/42 (52.38%), Postives = 26/42 (61.90%), Query Frame = 1 
Query:   10 CGKEFKSSGGLRLHMRSKHEGIRYSCPDCSKTFSSPSSLHRH 135
            C K F   G L  H+RS HEGI+Y C  CSK+F   S+L RH
Sbjct:    2 CPKSFSRKGELNKHVRSTHEGIKYPCSKCSKSFLDRSNLRRH 43
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BLAST of mRNA_M-pyrifera_M_contig91553.21215.1 vs. uniprot
Match: UPI001E671E6F (uncharacterized protein LOC123772695 isoform X1 n=2 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E671E6F)

HSP 1 Score: 52.4 bits (124), Expect = 1.650e-5
Identity = 19/48 (39.58%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 CEACGKEFKSSGGLRLHMRSKHEGIRYSCPDCSKTFSSPSSLHRHKAV 144
            C+ C K+ K+   L+LHM++KHEG ++ C +C+++F    S  +HKA+
Sbjct:  717 CKVCEKDCKTPYYLQLHMKTKHEGAKFLCLECNRSFKWKQSYRKHKAI 764
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BLAST of mRNA_M-pyrifera_M_contig91553.21215.1 vs. uniprot
Match: U4TTD6_DENPD (Uncharacterized protein (Fragment) n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=U4TTD6_DENPD)

HSP 1 Score: 50.8 bits (120), Expect = 5.240e-5
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 CEACGKEFKSSGGLRLHMRSKHEGIR-YSCPDCSKTFSSPSSLHRHKAV 144
            C  CGK +K+S  L LHMRS H G R   C  CS+TF+ PSSL +H+ +
Sbjct:  364 CNLCGKRYKNSKILLLHMRS-HTGERPLKCEICSRTFALPSSLQKHRRI 411
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BLAST of mRNA_M-pyrifera_M_contig91553.21215.1 vs. uniprot
Match: N6U244_DENPD (Uncharacterized protein (Fragment) n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6U244_DENPD)

HSP 1 Score: 50.8 bits (120), Expect = 5.400e-5
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 CEACGKEFKSSGGLRLHMRSKHEGIR-YSCPDCSKTFSSPSSLHRHKAV 144
            C  CGK +K+S  L LHMRS H G R   C  CS+TF+ PSSL +H+ +
Sbjct:  368 CNLCGKRYKNSKILLLHMRS-HTGERPLKCEICSRTFALPSSLQKHRRI 415
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91553.21215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001EB047B91.380e-645.83uncharacterized protein LOC124142196 n=7 Tax=Halio... [more]
A0A8D9EXC3_9HEMI4.010e-652.38Zinc finger protein 2 (Fragment) n=2 Tax=Cacopsyll... [more]
UPI001E671E6F1.650e-539.58uncharacterized protein LOC123772695 isoform X1 n=... [more]
U4TTD6_DENPD5.240e-551.02Uncharacterized protein (Fragment) n=1 Tax=Dendroc... [more]
N6U244_DENPD5.400e-551.02Uncharacterized protein (Fragment) n=1 Tax=Dendroc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91553contigM-pyrifera_M_contig91553:8..337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.5642836-CDS-M-pyrifera_M_contig91553:7..3371622816828.5642836-CDS-M-pyrifera_M_contig91553:7..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91553 8..337 +
1692278202.6152434-CDS-M-pyrifera_M_contig91553:7..3371692278202.6152434-CDS-M-pyrifera_M_contig91553:7..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91553 8..337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91553.21215.1prot_M-pyrifera_M_contig91553.21215.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91553 8..337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91553.21215.1

>prot_M-pyrifera_M_contig91553.21215.1 ID=prot_M-pyrifera_M_contig91553.21215.1|Name=mRNA_M-pyrifera_M_contig91553.21215.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
CEACGKEFKSSGGLRLHMRSKHEGIRYSCPDCSKTFSSPSSLHRHKAVHS
GVNHACEECGKKYSRRSGLLLHQRSAHLGLRYSCPDCSKTFTRKSSLTSH
KKKFHAGVE*
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mRNA from alignment at M-pyrifera_M_contig91553:8..337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91553.21215.1 ID=mRNA_M-pyrifera_M_contig91553.21215.1|Name=mRNA_M-pyrifera_M_contig91553.21215.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig91553:8..337+ (Macrocystis pyrifera P11B4 male)
TGTGAGGCATGTGGTAAGGAGTTCAAGTCGTCTGGTGGTCTTCGTTTGCA
CATGAGGAGCAAGCATGAAGGCATCCGCTACTCGTGCCCAGATTGCTCCA
AGACGTTTTCTTCTCCATCTAGCCTTCATCGTCACAAGGCTGTTCATTCT
GGTGTGAATCATGCGTGTGAAGAATGTGGTAAGAAGTATTCACGGCGCAG
TGGTCTCCTCCTCCACCAGAGAAGCGCTCATTTAGGCCTCCGCTACTCGT
GTCCAGATTGCTCCAAGACGTTTACACGGAAATCTTCCCTTACTTCCCAC
AAGAAGAAGTTCCATGCTGGTGTGGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91553:8..337+

>mRNA_M-pyrifera_M_contig91553.21215.1 ID=mRNA_M-pyrifera_M_contig91553.21215.1|Name=mRNA_M-pyrifera_M_contig91553.21215.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig91553:8..337+ (Macrocystis pyrifera P11B4 male)
TGTGAGGCATGTGGTAAGGAGTTCAAGTCGTCTGGTGGTCTTCGTTTGCA
CATGAGGAGCAAGCATGAAGGCATCCGCTACTCGTGCCCAGATTGCTCCA
AGACGTTTTCTTCTCCATCTAGCCTTCATCGTCACAAGGCTGTTCATTCT
GGTGTGAATCATGCGTGTGAAGAATGTGGTAAGAAGTATTCACGGCGCAG
TGGTCTCCTCCTCCACCAGAGAAGCGCTCATTTAGGCCTCCGCTACTCGT
GTCCAGATTGCTCCAAGACGTTTACACGGAAATCTTCCCTTACTTCCCAC
AAGAAGAAGTTCCATGCTGGTGTGGAGTGATGTGAGGCATGTGGTAAGGA
GTTCAAGTCGTCTGGTGGTCTTCGTTTGCACATGAGGAGCAAGCATGAAG
GCATCCGCTACTCGTGCCCAGATTGCTCCAAGACGTTTTCTTCTCCATCT
AGCCTTCATCGTCACAAGGCTGTTCATTCTGGTGTGAATCATGCGTGTGA
AGAATGTGGTAAGAAGTATTCACGGCGCAGTGGTCTCCTCCTCCACCAGA
GAAGCGCTCATTTAGGCCTCCGCTACTCGTGTCCAGATTGCTCCAAGACG
TTTACACGGAAATCTTCCCTTACTTCCCACAAGAAGAAGTTCCATGCTGG
TGTGGAGTGA
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