mRNA_M-pyrifera_M_contig9154.21211.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9154.21211.1
Unique NamemRNA_M-pyrifera_M_contig9154.21211.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9154.21211.1 vs. uniprot
Match: A0A7S3Q642_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q642_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.490e-27
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 2
Query:    5 AVQDCPGNCSFNGWCSVEFPVSRCMCHPGYYGNECQHLECLNNCSYPHGTCDSSTGRCACEMTYSPYN 208
            +++DCP NC+ NG+CS+EFP+SRC+C+ GY GN CQH+EC+NNCSYP+G CD STG C C    SPYN
Sbjct: 1005 SIRDCPDNCNDNGYCSLEFPMSRCICNDGYKGNACQHIECMNNCSYPNGECDYSTGACECNALRSPYN 1072          
BLAST of mRNA_M-pyrifera_M_contig9154.21211.1 vs. uniprot
Match: H3GSZ4_PHYRM (EGF-like domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GSZ4_PHYRM)

HSP 1 Score: 95.5 bits (236), Expect = 3.010e-21
Identity = 41/70 (58.57%), Postives = 48/70 (68.57%), Query Frame = 2
Query:    5 AVQDCPGNCSFNGWCSVEFPVSRCMCHPGYYGNECQHLECLNNCSYPHGTCDSSTGRCACEMTYSPYNNT 214
            +++DC  NCS +G+CSVEFP SRCMC  G+YG  C    CLNNCSYP+G C    G C C M Y PYNNT
Sbjct:  538 SIRDCGYNCSGHGYCSVEFPNSRCMCDEGWYGKYCDAQMCLNNCSYPNGEC--MNGSCYCAMVYEPYNNT 605          
BLAST of mRNA_M-pyrifera_M_contig9154.21211.1 vs. uniprot
Match: D8LEQ8_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ8_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 5.570e-21
Identity = 43/71 (60.56%), Postives = 46/71 (64.79%), Query Frame = 2
Query:    5 AVQDCPGNCSFNGWCSVEFPVSRCMCHPGYYGNECQHLECLNNCSYPHGTCDSSTGRCACEMTYSPYNNTR 217
            +++DC  NCSFNGWCSVEFPVSR                      YPHGTCDSSTG CACEMTYSPYNNTR
Sbjct:  844 SIKDCQYNCSFNGWCSVEFPVSRXXXXXXXXXXXXXXXXXXXXXXYPHGTCDSSTGVCACEMTYSPYNNTR 914          
BLAST of mRNA_M-pyrifera_M_contig9154.21211.1 vs. uniprot
Match: W2QAY2_PHYPN (EGF-like domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2QAY2_PHYPN)

HSP 1 Score: 93.6 bits (231), Expect = 1.400e-20
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:    5 AVQDCPGNCSFNGWCSVEFPVSRCMCHPGYYGNECQHLECLNNCSYPHGTCDSSTGRCACEMTYSPYNNT 214
            ++++C  NCS  G+CSVEFP SRCMC  G+YG  C+   CLNNCSYP+G C +  G C C M Y PYNNT
Sbjct:  531 SIRNCGYNCSGRGYCSVEFPNSRCMCDEGWYGKYCETQMCLNNCSYPNGECVN--GSCYCAMVYEPYNNT 598          
BLAST of mRNA_M-pyrifera_M_contig9154.21211.1 vs. uniprot
Match: A0A6A3M1I0_9STRA (EGF-like domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3M1I0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.410e-20
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:    5 AVQDCPGNCSFNGWCSVEFPVSRCMCHPGYYGNECQHLECLNNCSYPHGTCDSSTGRCACEMTYSPYNNT 214
            ++++C  NCS +G+CSVEFP SRCMC  G+YG  C    CLNNCSYP+G C +  G C C M Y PYNNT
Sbjct:  680 SIRNCGYNCSGHGYCSVEFPNSRCMCDDGWYGKYCDAQMCLNNCSYPNGECVN--GSCYCSMVYEPYNNT 747          
BLAST of mRNA_M-pyrifera_M_contig9154.21211.1 vs. uniprot
Match: A0A5A8EC49_CAFRO (EGF-like domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EC49_CAFRO)

HSP 1 Score: 91.3 bits (225), Expect = 9.170e-20
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 2
Query:    5 AVQDCPGNCSFNGWCSVEFPVSRCMCHPGYYGNECQHLECLNNCSYPHGTCDSSTGRCACEMTYSPYNNT 214
            +V+DCP  C+ NG+CSVEFPVSRC+C PG+ G  C    CLNNC+YP+G C    GRC C    +PYN +
Sbjct:  699 SVRDCPDGCNGNGYCSVEFPVSRCVCDPGWTGRACDTRLCLNNCTYPNGVCVG--GRCNCTFLQNPYNRS 766          
BLAST of mRNA_M-pyrifera_M_contig9154.21211.1 vs. uniprot
Match: A0A5D6XWT5_9STRA (EGF-like domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWT5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.360e-19
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 2
Query:    5 AVQDCPGNCSFNGWCSVEFPVSRCMCHPGYYGNECQHLECLNNCSYPHGTCDSSTGRCACEMTYSPYNNT 214
            +++DC  NCS +G+CSVEFP SRC+C  G++G  C    CLNNCSYP+G C    G C C M Y PYN +
Sbjct:  650 SIRDCGANCSGHGYCSVEFPNSRCLCDEGWFGKYCDAQMCLNNCSYPNGVC--LNGSCYCAMVYEPYNRS 717          
BLAST of mRNA_M-pyrifera_M_contig9154.21211.1 vs. uniprot
Match: A0A482UY94_9ARCH (EGF-like domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UY94_9ARCH)

HSP 1 Score: 85.1 bits (209), Expect = 1.170e-17
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 2
Query:    5 AVQDCPGNCSFNGWCSVEFPVSRCMCHPGYYGNECQHLECLNNCSYPHGTCDSSTGRCACEMTYSPYNNTR 217
            +V+DCP NCSFNGWCSVEFPVSRC                     YP+G C++++G CAC M YSPY NTR
Sbjct:  323 SVKDCPKNCSFNGWCSVEFPVSRCXXXXXXXXXXXXXXXXXXXXXYPNGVCNTTSGMCACNMMYSPYLNTR 393          
BLAST of mRNA_M-pyrifera_M_contig9154.21211.1 vs. uniprot
Match: A0A835Z8A8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.830e-17
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 2
Query:    5 AVQDCPGNCSFNGWCSVEFPVSRCMCHPGYYGNECQHLECLNNCSYPHGTCDSSTGRCACEMTYSPYNNTR 217
            +++DCP NCSF+GWCSVEFPVSRC                     YPHG C+++TG C C   Y+PYNNTR
Sbjct:  805 SIRDCPQNCSFHGWCSVEFPVSRCXXXXXXXXXXXXXXXXXXXXXYPHGVCNNATGECDCRDVYNPYNNTR 875          
BLAST of mRNA_M-pyrifera_M_contig9154.21211.1 vs. uniprot
Match: A0A7S2RQC4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQC4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.550e-17
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 2
Query:    5 AVQDCPGNCSFNGWCSVEFPVSRCMCHPGYYGNECQHLECLNNCSYPHGTCDSSTGRCACEMTYSPYNNTR 217
            +++DCP NC++NGWCSVE+PVSR                     S+P+G CD +TG C C+  YSPYNNTR
Sbjct:   24 SIKDCPDNCNYNGWCSVEYPVSRXXXXXXXXXXXXXXXXXXXXXSFPNGVCDYATGECKCQRLYSPYNNTR 94          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9154.21211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A7S3Q642_9STRA2.490e-2763.24Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
H3GSZ4_PHYRM3.010e-2158.57EGF-like domain-containing protein n=1 Tax=Phytoph... [more]
D8LEQ8_ECTSI5.570e-2160.56EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
W2QAY2_PHYPN1.400e-2057.14EGF-like domain-containing protein n=9 Tax=Phytoph... [more]
A0A6A3M1I0_9STRA1.410e-2057.14EGF-like domain-containing protein n=4 Tax=Phytoph... [more]
A0A5A8EC49_CAFRO9.170e-2054.29EGF-like domain-containing protein n=5 Tax=Cafeter... [more]
A0A5D6XWT5_9STRA2.360e-1952.86EGF-like domain-containing protein n=1 Tax=Pythium... [more]
A0A482UY94_9ARCH1.170e-1752.11EGF-like domain-containing protein n=1 Tax=archaeo... [more]
A0A835Z8A8_9STRA1.830e-1749.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RQC4_9STRA2.550e-1746.48Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9154contigM-pyrifera_M_contig9154:11012..11239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.4291203-CDS-M-pyrifera_M_contig9154:11011..112391622816828.4291203-CDS-M-pyrifera_M_contig9154:11011..11239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9154 11012..11239 +
1692278202.5518076-CDS-M-pyrifera_M_contig9154:11011..112391692278202.5518076-CDS-M-pyrifera_M_contig9154:11011..11239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9154 11012..11239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9154.21211.1prot_M-pyrifera_M_contig9154.21211.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9154 11012..11239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9154.21211.1

>prot_M-pyrifera_M_contig9154.21211.1 ID=prot_M-pyrifera_M_contig9154.21211.1|Name=mRNA_M-pyrifera_M_contig9154.21211.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
LRRAGLPRKLLLQRLVLCGVPRISVHVSPGVLRERMPAPGVPQQLLLPSR
NLRQLDGTVRVRDDLLAVQQHPVRT*
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mRNA from alignment at M-pyrifera_M_contig9154:11012..11239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9154.21211.1 ID=mRNA_M-pyrifera_M_contig9154.21211.1|Name=mRNA_M-pyrifera_M_contig9154.21211.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig9154:11012..11239+ (Macrocystis pyrifera P11B4 male)
CTCCGCCGTGCAGGACTGCCCAGGAAACTGCTCCTTCAACGGCTGGTGCT CTGTGGAGTTCCCCGTATCTCGGTGCATGTGTCACCCGGGGTACTACGGG AACGAATGCCAGCACCTGGAGTGCCTCAACAACTGCTCCTACCCTCACGG AACTTGCGACAGCTCGACGGGACGGTGCGCGTGCGAGATGACCTACTCGC CGTACAACAACACCCGGTGAGAACATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9154:11012..11239+

>mRNA_M-pyrifera_M_contig9154.21211.1 ID=mRNA_M-pyrifera_M_contig9154.21211.1|Name=mRNA_M-pyrifera_M_contig9154.21211.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig9154:11012..11239+ (Macrocystis pyrifera P11B4 male)
CTCCGCCGTGCAGGACTGCCCAGGAAACTGCTCCTTCAACGGCTGGTGCT
CTGTGGAGTTCCCCGTATCTCGGTGCATGTGTCACCCGGGGTACTACGGG
AACGAATGCCAGCACCTGGAGTGCCTCAACAACTGCTCCTACCCTCACGG
AACTTGCGACAGCTCGACGGGACGGTGCGCGTGCGAGATGACCTACTCGC
CGTACAACAACACCCGGTGAGAACATAGCTCCGCCGTGCAGGACTGCCCA
GGAAACTGCTCCTTCAACGGCTGGTGCTCTGTGGAGTTCCCCGTATCTCG
GTGCATGTGTCACCCGGGGTACTACGGGAACGAATGCCAGCACCTGGAGT
GCCTCAACAACTGCTCCTACCCTCACGGAACTTGCGACAGCTCGACGGGA
CGGTGCGCGTGCGAGATGACCTACTCGCCGTACAACAACACCCGGTGAGA
ACATAG
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