mRNA_M-pyrifera_M_contig91532.21208.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91532.21208.1
Unique NamemRNA_M-pyrifera_M_contig91532.21208.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A0A5A8DDX4_CAFRO (Rhomboid domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDX4_CAFRO)

HSP 1 Score: 84.3 bits (207), Expect = 5.710e-18
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   43 RAVLIGLLSTNVAVYLAVDWN--SEFAQKHLILSQDAI-RHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFGPPAIGLLG 270
            +AV+  L+ +N+AV+  +  N  S+F  KHL +S D +  HGRYHT+LTSAF HGSV H+A N+++LYF  PPA+ LLG
Sbjct:   40 KAVMFVLVGSNIAVFFMMQGNVNSDFVLKHLTVSYDGVVNHGRYHTLLTSAFMHGSVGHLAGNLISLYFLAPPALALLG 118          
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A4RUF2_OSTLU (Rhomboid domain-containing protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RUF2_OSTLU)

HSP 1 Score: 66.6 bits (161), Expect = 8.460e-12
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   61 LLSTNVAVYLAVDW----NSEFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFG 246
            L+  N AVY A  W    +  F +K+ ++S++A+ HGR+HTMLTSAF+H  + H+ MNM+ LYFFG
Sbjct:    1 LIGLNGAVYYA--WATTEDGRFMRKNFMVSEEALAHGRWHTMLTSAFSHFDLTHLGMNMIALYFFG 64          
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: UPI001C4E7B75 (RHOMBOID-like protein 12, mitochondrial isoform X1 n=2 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4E7B75)

HSP 1 Score: 65.9 bits (159), Expect = 1.170e-10
Identity = 32/81 (39.51%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   37 SERAVLIGLLSTNVAVYLAVDW---NSEFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFGPPAIGLLG 270
            +E  V++GL+  NVA+++   W   +  F +KH ++S + +  GR HT++TSAF+H  + H+A NM+ LYFFG   + L G
Sbjct:  141 TEDNVVLGLIVANVAIFIL--WRIADPTFMRKHFMISVENVISGRVHTLITSAFSHKDIGHLASNMIGLYFFGQNIVRLFG 219          
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A0A0B7N4K4_9FUNG (Rhomboid domain-containing protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7N4K4_9FUNG)

HSP 1 Score: 65.5 bits (158), Expect = 1.250e-10
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 1
Query:   49 VLIGLLSTNVAVYL----AVDWNSEFAQ--------KHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFGPPAI 258
            VL  ++ TNV +Y     A++   +F          KH I SQ+A+ HGRYHT+LTSAF+H S+ H+ +NML LY  G   I
Sbjct:   69 VLWSVIGTNVGIYFMWQYALNAYKQFGDSHWLDTMAKHFICSQEAVHHGRYHTLLTSAFSHKSLEHLGLNMLVLYSIGQGVI 150          
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: C1N3F4_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N3F4_MICPC)

HSP 1 Score: 64.3 bits (155), Expect = 1.750e-10
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   49 VLIGLLSTNVAVYLAVDWNS---EFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFGPPAIGLLG 270
            +L  +   NVAV+ A  W++    F + + ++S+++I+ GR+HT+LTSAF+H  V H+A NML LYFFG      LG
Sbjct:    6 MLYAIALANVAVFAA--WHNLDPRFMRANFLVSEESIKRGRWHTLLTSAFSHRDVSHLAANMLALYFFGRDVARALG 80          
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A0A2U1Q701_ARTAN (Rhomboid-related intramembrane serine protease family protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1Q701_ARTAN)

HSP 1 Score: 64.7 bits (156), Expect = 2.860e-10
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   49 VLIGLLSTNVAVYLAVDW---NSEFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFG 246
            V+IGL+ TNVAV+L   W   +  F  ++ ++  D  + GR+HTM+TSAF+H  V HI  NM+ LYFFG
Sbjct:  124 VVIGLIVTNVAVFLL--WRVADRRFMVQNFMIQLDNFKSGRFHTMITSAFSHNDVGHIVSNMIGLYFFG 190          
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A0A6P3ZU51_ZIZJJ (RHOMBOID-like protein 12, mitochondrial n=3 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3ZU51_ZIZJJ)

HSP 1 Score: 64.7 bits (156), Expect = 3.040e-10
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   49 VLIGLLSTNVAVYLAVDW---NSEFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFG 246
            V++GL+  NVAV+L   W   + +F   +  +S D I+HGR HT++TSAF+H  V HI  NM+ LYFFG
Sbjct:  144 VVLGLIIANVAVFLL--WRIGDYKFMMNNFTISLDNIKHGRVHTLITSAFSHKDVEHIISNMIGLYFFG 210          
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A0A2U1QIL0_ARTAN (Rhomboid-related intramembrane serine protease family protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QIL0_ARTAN)

HSP 1 Score: 64.7 bits (156), Expect = 3.650e-10
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   49 VLIGLLSTNVAVYLAVDW---NSEFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFG 246
            V+IGL+ TNVAV+L   W   +  F  ++ ++  D  + GR+HTM+TSAF+H  V HI  NM+ LYFFG
Sbjct:  491 VVIGLIVTNVAVFLL--WRVADRRFMVQNFMIQLDNFKSGRFHTMITSAFSHNDVGHIVSNMIGLYFFG 557          
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A0A251URG1_HELAN (Putative rhomboid-related intramembrane serine protease family protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251URG1_HELAN)

HSP 1 Score: 64.3 bits (155), Expect = 4.040e-10
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   49 VLIGLLSTNVAVYLAVDW---NSEFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFG 246
            V+IGL+ TNVAV+L   W   +  F  ++ ++  D  + GR+HTM+TSAF+H  V HI  NM+ LYFFG
Sbjct:  133 VIIGLIVTNVAVFLL--WRVADRRFMMQNFMIQLDNFKSGRFHTMITSAFSHIEVGHIVSNMIGLYFFG 199          
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A0A8K0DWM6_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0DWM6_9ROSA)

HSP 1 Score: 64.3 bits (155), Expect = 4.230e-10
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   37 SERAVLIGLLSTNVAVYLAVDW---NSEFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFG 246
            S   V++GL+  NVAV+L   W   + +F   +  +S D ++HGR HT++TSAF+H    HI  NML LYFFG
Sbjct:  146 STNDVVLGLIIANVAVFLL--WQIADPKFMMNNFTISLDNVKHGRLHTVITSAFSHKDTEHIFSNMLGLYFFG 216          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DDX4_CAFRO5.710e-1851.90Rhomboid domain-containing protein n=2 Tax=Cafeter... [more]
A4RUF2_OSTLU8.460e-1248.48Rhomboid domain-containing protein (Fragment) n=1 ... [more]
UPI001C4E7B751.170e-1039.51RHOMBOID-like protein 12, mitochondrial isoform X1... [more]
A0A0B7N4K4_9FUNG1.250e-1042.68Rhomboid domain-containing protein n=1 Tax=Parasit... [more]
C1N3F4_MICPC1.750e-1042.86Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A2U1Q701_ARTAN2.860e-1047.83Rhomboid-related intramembrane serine protease fam... [more]
A0A6P3ZU51_ZIZJJ3.040e-1047.83RHOMBOID-like protein 12, mitochondrial n=3 Tax=Zi... [more]
A0A2U1QIL0_ARTAN3.650e-1047.83Rhomboid-related intramembrane serine protease fam... [more]
A0A251URG1_HELAN4.040e-1047.83Putative rhomboid-related intramembrane serine pro... [more]
A0A8K0DWM6_9ROSA4.230e-1045.21Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91532contigM-pyrifera_M_contig91532:4..273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.6
Seed ortholog evalue5.4e-11
Seed eggNOG ortholog70448.Q01CN6
KEGG koko:K09650
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.RHOMBOID-like protein 12
EggNOG OGs37MHD@33090,COG0705@1,KOG2980@2759
EC3.4.21.105
COG Functional cat.T
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.2672288-CDS-M-pyrifera_M_contig91532:3..2731622816828.2672288-CDS-M-pyrifera_M_contig91532:3..273Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91532 4..273 -
1692278202.468431-CDS-M-pyrifera_M_contig91532:3..2731692278202.468431-CDS-M-pyrifera_M_contig91532:3..273Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91532 4..273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91532.21208.1prot_M-pyrifera_M_contig91532.21208.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91532 4..273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91532.21208.1

>prot_M-pyrifera_M_contig91532.21208.1 ID=prot_M-pyrifera_M_contig91532.21208.1|Name=mRNA_M-pyrifera_M_contig91532.21208.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
GGGGGGGGGEGGSERAVLIGLLSTNVAVYLAVDWNSEFAQKHLILSQDAI
RHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFGPPAIGLLG
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mRNA from alignment at M-pyrifera_M_contig91532:4..273-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91532.21208.1 ID=mRNA_M-pyrifera_M_contig91532.21208.1|Name=mRNA_M-pyrifera_M_contig91532.21208.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig91532:4..273- (Macrocystis pyrifera P11B4 male)
GGAGGCGGCGGGGGAGGCGGGGGAGGCGAGGGAGGGAGTGAGAGGGCAGT TTTGATCGGTTTGCTGTCCACGAACGTGGCTGTGTACTTGGCCGTGGACT GGAACAGCGAGTTTGCGCAGAAGCACCTGATTTTGTCGCAGGACGCGATT CGACACGGTCGGTACCACACGATGTTGACGAGTGCGTTTGCTCACGGTTC CGTTCCACACATTGCGATGAACATGCTGACGCTGTACTTTTTCGGCCCAC CCGCGATCGGGCTGCTGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91532:4..273-

>mRNA_M-pyrifera_M_contig91532.21208.1 ID=mRNA_M-pyrifera_M_contig91532.21208.1|Name=mRNA_M-pyrifera_M_contig91532.21208.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig91532:4..273- (Macrocystis pyrifera P11B4 male)
GGAGGCGGCGGGGGAGGCGGGGGAGGCGAGGGAGGGAGTGAGAGGGCAGT
TTTGATCGGTTTGCTGTCCACGAACGTGGCTGTGTACTTGGCCGTGGACT
GGAACAGCGAGTTTGCGCAGAAGCACCTGATTTTGTCGCAGGACGCGATT
CGACACGGTCGGTACCACACGATGTTGACGAGTGCGTTTGCTCACGGTTC
CGTTCCACACATTGCGATGAACATGCTGACGCTGTACTTTTTCGGCCCAC
CCGCGATCGGGCTGCTGGGGGGAGGCGGCGGGGGAGGCGGGGGAGGCGAG
GGAGGGAGTGAGAGGGCAGTTTTGATCGGTTTGCTGTCCACGAACGTGGC
TGTGTACTTGGCCGTGGACTGGAACAGCGAGTTTGCGCAGAAGCACCTGA
TTTTGTCGCAGGACGCGATTCGACACGGTCGGTACCACACGATGTTGACG
AGTGCGTTTGCTCACGGTTCCGTTCCACACATTGCGATGAACATGCTGAC
GCTGTACTTTTTCGGCCCACCCGCGATCGGGCTGCTGGGG
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