mRNA_M-pyrifera_M_contig91532.21208.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A0A5A8DDX4_CAFRO (Rhomboid domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDX4_CAFRO) HSP 1 Score: 84.3 bits (207), Expect = 5.710e-18 Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1 Query: 43 RAVLIGLLSTNVAVYLAVDWN--SEFAQKHLILSQDAI-RHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFGPPAIGLLG 270 +AV+ L+ +N+AV+ + N S+F KHL +S D + HGRYHT+LTSAF HGSV H+A N+++LYF PPA+ LLG Sbjct: 40 KAVMFVLVGSNIAVFFMMQGNVNSDFVLKHLTVSYDGVVNHGRYHTLLTSAFMHGSVGHLAGNLISLYFLAPPALALLG 118
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A4RUF2_OSTLU (Rhomboid domain-containing protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RUF2_OSTLU) HSP 1 Score: 66.6 bits (161), Expect = 8.460e-12 Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 1 Query: 61 LLSTNVAVYLAVDW----NSEFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFG 246 L+ N AVY A W + F +K+ ++S++A+ HGR+HTMLTSAF+H + H+ MNM+ LYFFG Sbjct: 1 LIGLNGAVYYA--WATTEDGRFMRKNFMVSEEALAHGRWHTMLTSAFSHFDLTHLGMNMIALYFFG 64
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: UPI001C4E7B75 (RHOMBOID-like protein 12, mitochondrial isoform X1 n=2 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4E7B75) HSP 1 Score: 65.9 bits (159), Expect = 1.170e-10 Identity = 32/81 (39.51%), Postives = 52/81 (64.20%), Query Frame = 1 Query: 37 SERAVLIGLLSTNVAVYLAVDW---NSEFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFGPPAIGLLG 270 +E V++GL+ NVA+++ W + F +KH ++S + + GR HT++TSAF+H + H+A NM+ LYFFG + L G Sbjct: 141 TEDNVVLGLIVANVAIFIL--WRIADPTFMRKHFMISVENVISGRVHTLITSAFSHKDIGHLASNMIGLYFFGQNIVRLFG 219
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A0A0B7N4K4_9FUNG (Rhomboid domain-containing protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7N4K4_9FUNG) HSP 1 Score: 65.5 bits (158), Expect = 1.250e-10 Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 1 Query: 49 VLIGLLSTNVAVYL----AVDWNSEFAQ--------KHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFGPPAI 258 VL ++ TNV +Y A++ +F KH I SQ+A+ HGRYHT+LTSAF+H S+ H+ +NML LY G I Sbjct: 69 VLWSVIGTNVGIYFMWQYALNAYKQFGDSHWLDTMAKHFICSQEAVHHGRYHTLLTSAFSHKSLEHLGLNMLVLYSIGQGVI 150
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: C1N3F4_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N3F4_MICPC) HSP 1 Score: 64.3 bits (155), Expect = 1.750e-10 Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1 Query: 49 VLIGLLSTNVAVYLAVDWNS---EFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFGPPAIGLLG 270 +L + NVAV+ A W++ F + + ++S+++I+ GR+HT+LTSAF+H V H+A NML LYFFG LG Sbjct: 6 MLYAIALANVAVFAA--WHNLDPRFMRANFLVSEESIKRGRWHTLLTSAFSHRDVSHLAANMLALYFFGRDVARALG 80
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A0A2U1Q701_ARTAN (Rhomboid-related intramembrane serine protease family protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1Q701_ARTAN) HSP 1 Score: 64.7 bits (156), Expect = 2.860e-10 Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1 Query: 49 VLIGLLSTNVAVYLAVDW---NSEFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFG 246 V+IGL+ TNVAV+L W + F ++ ++ D + GR+HTM+TSAF+H V HI NM+ LYFFG Sbjct: 124 VVIGLIVTNVAVFLL--WRVADRRFMVQNFMIQLDNFKSGRFHTMITSAFSHNDVGHIVSNMIGLYFFG 190
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A0A6P3ZU51_ZIZJJ (RHOMBOID-like protein 12, mitochondrial n=3 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3ZU51_ZIZJJ) HSP 1 Score: 64.7 bits (156), Expect = 3.040e-10 Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1 Query: 49 VLIGLLSTNVAVYLAVDW---NSEFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFG 246 V++GL+ NVAV+L W + +F + +S D I+HGR HT++TSAF+H V HI NM+ LYFFG Sbjct: 144 VVLGLIIANVAVFLL--WRIGDYKFMMNNFTISLDNIKHGRVHTLITSAFSHKDVEHIISNMIGLYFFG 210
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A0A2U1QIL0_ARTAN (Rhomboid-related intramembrane serine protease family protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QIL0_ARTAN) HSP 1 Score: 64.7 bits (156), Expect = 3.650e-10 Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1 Query: 49 VLIGLLSTNVAVYLAVDW---NSEFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFG 246 V+IGL+ TNVAV+L W + F ++ ++ D + GR+HTM+TSAF+H V HI NM+ LYFFG Sbjct: 491 VVIGLIVTNVAVFLL--WRVADRRFMVQNFMIQLDNFKSGRFHTMITSAFSHNDVGHIVSNMIGLYFFG 557
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A0A251URG1_HELAN (Putative rhomboid-related intramembrane serine protease family protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251URG1_HELAN) HSP 1 Score: 64.3 bits (155), Expect = 4.040e-10 Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1 Query: 49 VLIGLLSTNVAVYLAVDW---NSEFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFG 246 V+IGL+ TNVAV+L W + F ++ ++ D + GR+HTM+TSAF+H V HI NM+ LYFFG Sbjct: 133 VIIGLIVTNVAVFLL--WRVADRRFMMQNFMIQLDNFKSGRFHTMITSAFSHIEVGHIVSNMIGLYFFG 199
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Match: A0A8K0DWM6_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0DWM6_9ROSA) HSP 1 Score: 64.3 bits (155), Expect = 4.230e-10 Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1 Query: 37 SERAVLIGLLSTNVAVYLAVDW---NSEFAQKHLILSQDAIRHGRYHTMLTSAFAHGSVPHIAMNMLTLYFFG 246 S V++GL+ NVAV+L W + +F + +S D ++HGR HT++TSAF+H HI NML LYFFG Sbjct: 146 STNDVVLGLIIANVAVFLL--WQIADPKFMMNNFTISLDNVKHGRLHTVITSAFSHKDTEHIFSNMLGLYFFG 216 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91532.21208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig91532.21208.1 >prot_M-pyrifera_M_contig91532.21208.1 ID=prot_M-pyrifera_M_contig91532.21208.1|Name=mRNA_M-pyrifera_M_contig91532.21208.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp GGGGGGGGGEGGSERAVLIGLLSTNVAVYLAVDWNSEFAQKHLILSQDAIback to top mRNA from alignment at M-pyrifera_M_contig91532:4..273- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig91532.21208.1 ID=mRNA_M-pyrifera_M_contig91532.21208.1|Name=mRNA_M-pyrifera_M_contig91532.21208.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig91532:4..273- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig91532:4..273- >mRNA_M-pyrifera_M_contig91532.21208.1 ID=mRNA_M-pyrifera_M_contig91532.21208.1|Name=mRNA_M-pyrifera_M_contig91532.21208.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig91532:4..273- (Macrocystis pyrifera P11B4 male)back to top |