mRNA_M-pyrifera_M_contig90902.21073.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90902.21073.1
Unique NamemRNA_M-pyrifera_M_contig90902.21073.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90902.21073.1 vs. uniprot
Match: A0A7S4MSN4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MSN4_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 1.840e-17
Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:   13 GFRFACKFEDLKENKGIKASIGRKSVALFLTKVEGRTRVYALENACTHQGVPLHTGTLTVVENVTHAVCPGHGYRFNCKTGHSKESGGAFKQRVYQVKKKGTEVWIK 333
            G+   C+F DLK  KGI+  + +K +A+FL        VY +++ CTHQ VPL  G +   +      CPGHG +FN KTG    S   + Q VY  K KG  VW K
Sbjct:   12 GYTLLCRFTDLKPEKGIRVKVNKKKLAIFLVN----DSVYVMDDKCTHQDVPLSPGDIEEYKGEPAVKCPGHGLKFNLKTGAC--SAKKYTQPVYASKVKGEIVWGK 112
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BLAST of mRNA_M-pyrifera_M_contig90902.21073.1 vs. uniprot
Match: A0A7S4IUR2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IUR2_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 6.170e-17
Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:   13 GFRFACKFEDLKENKGIKASIGRKSVALFLTKVEGRTRVYALENACTHQGVPLHTGTLTVVENVTHAVCPGHGYRFNCKTGHSKESGGAFKQRVYQVKKKGTEVWIK 333
            G+   C+F DLK  KGI+  + +K +A+FL        VY +++ CTHQ VPL  G +   +      CPGHG +FN KTG    S   + Q VY  K KG  VW K
Sbjct:   61 GYTLLCRFTDLKPEKGIRVKVNKKKLAIFLVN----DSVYVMDDKCTHQDVPLSPGDIEEYKGEPAVKCPGHGLKFNLKTGAC--SAKKYTQPVYASKVKGEIVWGK 161
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BLAST of mRNA_M-pyrifera_M_contig90902.21073.1 vs. uniprot
Match: E6PD17_9ZZZZ (Putative Assimilatory nitrite reductase (NAD(P)H) small subunit n=3 Tax=root TaxID=1 RepID=E6PD17_9ZZZZ)

HSP 1 Score: 49.7 bits (117), Expect = 2.110e-5
Identity = 33/82 (40.24%), Postives = 43/82 (52.44%), Query Frame = 1 
Query:   10 EGFRFACKFEDLKENKGIKASIGRKSVALFLTKVEGRTRVYALENACTHQGVPLHTGTLTVVENVTHAVCPGHGYRFNCKTG 255
            EGF    +   L  N  I  S+G   VA+F    E    ++ALENAC HQG PL  G+  V + V    CP H +RF+ +TG
Sbjct:    3 EGFLCVAERSALARNAAISRSVGAYEVAIFDCDGE----LFALENACPHQGGPLVEGS--VEQGVV--TCPWHAWRFDLRTG 76
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BLAST of mRNA_M-pyrifera_M_contig90902.21073.1 vs. uniprot
Match: A0A4Y9MW45_9ACTN (Non-heme iron oxygenase ferredoxin subunit n=1 Tax=Geodermatophilus sp. DF01_2 TaxID=2559610 RepID=A0A4Y9MW45_9ACTN)

HSP 1 Score: 49.7 bits (117), Expect = 2.890e-5
Identity = 31/105 (29.52%), Postives = 50/105 (47.62%), Query Frame = 1 
Query:   16 FRFACKFEDLKENKGIKASIGRKSVALFLTKVEGRTRVYALENACTHQGVPLHTGTLTVVENVTHAVCPGHGYRFNCKTGHSKESGGAFKQRVYQVKKKGTEVWI 330
            F   C   ++ EN  ++  +    VA+   + EG   VYALE+ C+HQ VPL  G + + +      C  HG  F+ +TG            VY V+ +G +V++
Sbjct:    3 FERVCGLSEVPENGALRVELADIDVAVV--RFEGE--VYALEDRCSHQDVPLTEGDVELFDGAPTIECFLHGSCFDLRTGEPTNLPATEPVDVYPVRVEGEDVYV 103
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90902.21073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S4MSN4_9EUKA1.840e-1740.19Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4IUR2_9EUKA6.170e-1740.19Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
E6PD17_9ZZZZ2.110e-540.24Putative Assimilatory nitrite reductase (NAD(P)H) ... [more]
A0A4Y9MW45_9ACTN2.890e-529.52Non-heme iron oxygenase ferredoxin subunit n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90902contigM-pyrifera_M_contig90902:86..421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score62.4
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog946362.XP_004991081.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rieske-like [2Fe-2S] domain
EggNOG OGs2B00U@1,2S00Q@2759,3A219@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816821.3669856-CDS-M-pyrifera_M_contig90902:85..4211622816821.3669856-CDS-M-pyrifera_M_contig90902:85..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90902 86..421 -
1692278198.2890463-CDS-M-pyrifera_M_contig90902:85..4211692278198.2890463-CDS-M-pyrifera_M_contig90902:85..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90902 86..421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90902.21073.1prot_M-pyrifera_M_contig90902.21073.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90902 86..421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90902.21073.1

>prot_M-pyrifera_M_contig90902.21073.1 ID=prot_M-pyrifera_M_contig90902.21073.1|Name=mRNA_M-pyrifera_M_contig90902.21073.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
ADEEGFRFACKFEDLKENKGIKASIGRKSVALFLTKVEGRTRVYALENAC
THQGVPLHTGTLTVVENVTHAVCPGHGYRFNCKTGHSKESGGAFKQRVYQ
VKKKGTEVWIK*
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mRNA from alignment at M-pyrifera_M_contig90902:86..421-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90902.21073.1 ID=mRNA_M-pyrifera_M_contig90902.21073.1|Name=mRNA_M-pyrifera_M_contig90902.21073.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig90902:86..421- (Macrocystis pyrifera P11B4 male)
GCAGACGAGGAGGGGTTCCGGTTCGCATGCAAGTTCGAGGACCTGAAGGA
AAATAAGGGTATTAAGGCGAGTATCGGACGCAAGTCGGTAGCACTCTTCC
TCACGAAGGTGGAAGGCCGTACCCGAGTCTATGCCCTGGAGAACGCCTGC
ACACACCAGGGAGTGCCGCTGCACACCGGCACCCTTACTGTGGTGGAGAA
CGTCACACACGCGGTCTGCCCAGGCCATGGCTACCGCTTCAACTGCAAGA
CCGGCCACTCGAAGGAGAGCGGTGGGGCTTTCAAACAGAGAGTGTACCAG
GTGAAGAAGAAGGGCACAGAGGTGTGGATCAAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90902:86..421-

>mRNA_M-pyrifera_M_contig90902.21073.1 ID=mRNA_M-pyrifera_M_contig90902.21073.1|Name=mRNA_M-pyrifera_M_contig90902.21073.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig90902:86..421- (Macrocystis pyrifera P11B4 male)
GCAGACGAGGAGGGGTTCCGGTTCGCATGCAAGTTCGAGGACCTGAAGGA
AAATAAGGGTATTAAGGCGAGTATCGGACGCAAGTCGGTAGCACTCTTCC
TCACGAAGGTGGAAGGCCGTACCCGAGTCTATGCCCTGGAGAACGCCTGC
ACACACCAGGGAGTGCCGCTGCACACCGGCACCCTTACTGTGGTGGAGAA
CGTCACACACGCGGTCTGCCCAGGCCATGGCTACCGCTTCAACTGCAAGA
CCGGCCACTCGAAGGAGAGCGGTGGGGCTTTCAAACAGAGAGTGTACCAG
GTGAAGAAGAAGGGCACAGAGGTGTGGATCAAATAAGCAGACGAGGAGGG
GTTCCGGTTCGCATGCAAGTTCGAGGACCTGAAGGAAAATAAGGGTATTA
AGGCGAGTATCGGACGCAAGTCGGTAGCACTCTTCCTCACGAAGGTGGAA
GGCCGTACCCGAGTCTATGCCCTGGAGAACGCCTGCACACACCAGGGAGT
GCCGCTGCACACCGGCACCCTTACTGTGGTGGAGAACGTCACACACGCGG
TCTGCCCAGGCCATGGCTACCGCTTCAACTGCAAGACCGGCCACTCGAAG
GAGAGCGGTGGGGCTTTCAAACAGAGAGTGTACCAGGTGAAGAAGAAGGG
CACAGAGGTGTGGATCAAATAA
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