mRNA_M-pyrifera_M_contig90880.21067.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90880.21067.1
Unique NamemRNA_M-pyrifera_M_contig90880.21067.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90880.21067.1 vs. uniprot
Match: D7FZG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG5_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 5.970e-25
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 QYRGMKTSTDILSFPMHDMSDNPGVLPKVKFVAEMDLGDMFISLAYVDRQIARDREE 171
            QYRGM TSTDILSFP HDMS +PGVLPKV+F AEMDLGDMFISLAYVDRQI RDREE
Sbjct:  156 QYRGMSTSTDILSFPNHDMSGSPGVLPKVRFPAEMDLGDMFISLAYVDRQIKRDREE 212
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BLAST of mRNA_M-pyrifera_M_contig90880.21067.1 vs. uniprot
Match: A0A7S2RF28_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RF28_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.310e-8
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 QYRGMKTSTDILSFPMHDMSDNPGVLPKVKFVAEMDLGDMFISLAYVDRQIARDREEA 174
            +YRGM+ STDILSFP +D    P  LP+++   +M+LGDM +S+ YV R   RD  +A
Sbjct:  115 RYRGMRKSTDILSFPFYDQLRAPDPLPEMQCEDDMNLGDMIVSVPYVARACKRDHRDA 172
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BLAST of mRNA_M-pyrifera_M_contig90880.21067.1 vs. uniprot
Match: F2UMB9_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UMB9_SALR5)

HSP 1 Score: 57.0 bits (136), Expect = 2.140e-8
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 QYRGMKTSTDILSFPMHDMSDNPGVLPKVKFVAEMDLGDMFISLAYVDRQ 150
            QYRG+  STD+LSFP H+++  PG LP V+F  E DLGD+F+SL  +  Q
Sbjct:   59 QYRGVGASTDVLSFPFHEVT-TPGTLPPVEFEDEKDLGDIFLSLDTIQAQ 107
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BLAST of mRNA_M-pyrifera_M_contig90880.21067.1 vs. uniprot
Match: A0A4D9DAX9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAX9_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.320e-5
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    1 QYRGMKTSTDILSFPMHDMSDNPGVLPKVKFVAE---MDLGDMFISLAYVDRQIARDR 165
            +YRG +T+TDILSFP H+  + PGV     +       DLGDM +S+ YV RQ  RD+
Sbjct:  127 RYRGKRTATDILSFPFHEY-EAPGVPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQ 183
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BLAST of mRNA_M-pyrifera_M_contig90880.21067.1 vs. uniprot
Match: W7UC15_9STRA (Rrna maturation factor n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UC15_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.410e-5
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:    1 QYRGMKTSTDILSFPMHDMSDNPGVLPKVKFVAE---MDLGDMFISLAYVDRQIARDREE 171
            +YRG +T+TDILSFP H+  + PG+     +       DLGDM +S+ YV RQ  RD+ +
Sbjct:  263 RYRGKRTATDILSFPFHEY-EAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQAD 321
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90880.21067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FZG5_ECTSI5.970e-2587.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RF28_9STRA1.310e-848.28Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F2UMB9_SALR52.140e-854.00Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A4D9DAX9_9STRA2.320e-546.55Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7UC15_9STRA2.410e-543.33Rrna maturation factor n=1 Tax=Nannochloropsis gad... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90880contigM-pyrifera_M_contig90880:191..784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.5e-17
Seed eggNOG ortholog2880.D7FZG5
Preferred nameYBEY
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGs2R6QZ@2759,COG0319@1
Ec32 ortholog descriptionEndoribonuclease YbeY
Ec32 orthologEc-19_003220.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size189
Cds size177
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90880.21067.1prot_M-pyrifera_M_contig90880.21067.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90880 203..784 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816821.1222367-UTR-M-pyrifera_M_contig90880:190..2021622816821.1222367-UTR-M-pyrifera_M_contig90880:190..202Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90880 191..202 +
1692278198.1601114-UTR-M-pyrifera_M_contig90880:190..2021692278198.1601114-UTR-M-pyrifera_M_contig90880:190..202Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90880 191..202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816821.133374-CDS-M-pyrifera_M_contig90880:202..2741622816821.133374-CDS-M-pyrifera_M_contig90880:202..274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90880 203..274 +
1692278198.178308-CDS-M-pyrifera_M_contig90880:202..2741692278198.178308-CDS-M-pyrifera_M_contig90880:202..274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90880 203..274 +
1622816821.1466691-CDS-M-pyrifera_M_contig90880:679..7841622816821.1466691-CDS-M-pyrifera_M_contig90880:679..784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90880 680..784 +
1692278198.1902406-CDS-M-pyrifera_M_contig90880:679..7841692278198.1902406-CDS-M-pyrifera_M_contig90880:679..784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90880 680..784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90880.21067.1

>prot_M-pyrifera_M_contig90880.21067.1 ID=prot_M-pyrifera_M_contig90880.21067.1|Name=mRNA_M-pyrifera_M_contig90880.21067.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
MKTSTDILSFPMHDMSDNPGVLPKVKFVAEMDLGDMFISLAYVDRQIARD
REEAAAAAA
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mRNA from alignment at M-pyrifera_M_contig90880:191..784+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90880.21067.1 ID=mRNA_M-pyrifera_M_contig90880.21067.1|Name=mRNA_M-pyrifera_M_contig90880.21067.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig90880:191..784+ (Macrocystis pyrifera P11B4 male)
CAGTACCGGGGAATGAAGACCTCCACCGACATTTTATCGTTCCCCATGCA
CGATATGTCCGACAATCCCGGGGTGCTCCCGAAGGTGTGGTATGGTACGG
TATTGTGTGATATAACATTGTGTGGGATTGAAATGGTACGGTATGGTTTT
GTTTGGAATGGTATGGTATGGCGTGGTGTGGGATTGGATGGGAAGGGATC
GGGTATGGTATGGTAGGGTATGGTACGGCGGAACGCACGAGACCATATCA
CATTCCATACCGTACCATAACACGACTCAATACCCTAAACACAACACATC
AAAACACATCTCAGCACAACTAAACACAGCATGACACCACATAACACAGC
ACAAAAAATATACCAGGTATATATATATTTATCTCCCTCCCTCCTCTCTC
TCTCTCTCCCTATCTCTCTCTCTCTCTCTTTCTCTCTCACTCGCGTTCCC
ACCGCCCCCCTCCCCACACCCGAACCCACATCCACATAGGTGAAGTTCGT
CGCTGAGATGGACCTGGGAGACATGTTCATATCCCTCGCGTACGTTGACC
GACAAATCGCAAGGGACAGGGAAGAGGCGGCAGCAGCAGCAGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90880:191..784+

>mRNA_M-pyrifera_M_contig90880.21067.1 ID=mRNA_M-pyrifera_M_contig90880.21067.1|Name=mRNA_M-pyrifera_M_contig90880.21067.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig90880:191..784+ (Macrocystis pyrifera P11B4 male)
ATGAAGACCTCCACCGACATTTTATCGTTCCCCATGCACGATATGTCCGA
CAATCCCGGGGTGCTCCCGAAGATGAAGACCTCCACCGACATTTTATCGT
TCCCCATGCACGATATGTCCGACAATCCCGGGGTGCTCCCGAAGGTGAAG
TTCGTCGCTGAGATGGACCTGGGAGACATGTTCATATCCCTCGCGTACGT
TGACCGACAAATCGCAAGGGACAGGGAAGAGGCGGCAGCAGCAGCAGCAG
TGAAGTTCGTCGCTGAGATGGACCTGGGAGACATGTTCATATCCCTCGCG
TACGTTGACCGACAAATCGCAAGGGACAGGGAAGAGGCGGCAGCAGCAGC
AGCA
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