mRNA_M-pyrifera_M_contig90810.21046.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90810.21046.1
Unique NamemRNA_M-pyrifera_M_contig90810.21046.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90810.21046.1 vs. uniprot
Match: A0A5A8EGR0_CAFRO (RF_PROK_I domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EGR0_CAFRO)

HSP 1 Score: 95.9 bits (237), Expect = 5.750e-23
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:   73 GEDGEYPRVKVPRHDLLVRFCRSPGPGGQNVNKVNTKAEVRFNIHDAAWLPTEVAERLQKKEPGRVSKTGDFIVTSSRTR 312
            G+D E  +++VPR  L + F RS G GGQNVNKVNTKAEVRF+ ++A+WLP +V  RL    P RV+  G+F VTS R R
Sbjct:   21 GDDSEAEKIEVPRGALSLGFSRSSGAGGQNVNKVNTKAEVRFDAYNASWLPPDVRSRLLDANPARVNAKGEFFVTSERHR 100
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BLAST of mRNA_M-pyrifera_M_contig90810.21046.1 vs. uniprot
Match: UPI0018995B77 (peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI0018995B77)

HSP 1 Score: 95.5 bits (236), Expect = 1.960e-22
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 1 
Query:   28 HTSVVMLGKRGKG---------EGGEDGEYPRVKVPRHDLLVRFCRSPGPGGQNVNKVNTKAEVRFNIHDAAWLPTEVAERLQKKEPGRVSKTGDFIVTSSRTR 312
            H SVVM+ +  K           G +D E  ++ +P   L V + RS GPGGQ+VNKVNTKAEVRF++H A W+P +V + + +K   R++K G+ +VTS R+R
Sbjct:   29 HGSVVMMRQNNKAFSSRMYYGTRGTDDTEDVQIHIPVERLTVAYSRSSGPGGQHVNKVNTKAEVRFHLHTAHWIPEDVRQNILEKNKNRINKAGELLVTSERSR 132
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BLAST of mRNA_M-pyrifera_M_contig90810.21046.1 vs. uniprot
Match: UPI001C058F17 (peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C058F17)

HSP 1 Score: 92.8 bits (229), Expect = 2.000e-21
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:   64 GEGGEDGEYPRVKVPRHDLLVRFCRSPGPGGQNVNKVNTKAEVRFNIHDAAWLPTEVAERLQKKEPGRVSKTGDFIVTSSRTR 312
            G  G D E  +V +P   L V + RS GPGGQ+VNKVNTKAEVRF++H A W+P +V E++ +K   R++K G+ +VTS  +R
Sbjct:   46 GTRGTDTEDTQVHIPVDRLTVSYSRSSGPGGQHVNKVNTKAEVRFHVHTADWIPEDVREKIFEKNKNRINKAGELLVTSETSR 128
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BLAST of mRNA_M-pyrifera_M_contig90810.21046.1 vs. uniprot
Match: UPI001ED7FE1B (peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Tax=Scatophagus argus TaxID=75038 RepID=UPI001ED7FE1B)

HSP 1 Score: 92.8 bits (229), Expect = 2.050e-21
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   64 GEGGEDGEYP-RVKVPRHDLLVRFCRSPGPGGQNVNKVNTKAEVRFNIHDAAWLPTEVAERLQKKEPGRVSKTGDFIVTSSRTR 312
            G  G D E   +V +P   L V +CRS GPGGQ+VNKVNTKAEVRF++H A W+P +V +++ +K   R++K G+ +VTS  +R
Sbjct:   46 GSRGTDSEQDDQVHIPVERLTVSYCRSSGPGGQHVNKVNTKAEVRFHVHTADWIPKDVRQKIVEKNRNRINKAGELLVTSELSR 129
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BLAST of mRNA_M-pyrifera_M_contig90810.21046.1 vs. uniprot
Match: UPI000A2A894A (peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A894A)

HSP 1 Score: 91.7 bits (226), Expect = 4.900e-21
Identity = 40/78 (51.28%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:   82 GEYPRV-KVPRHDLLVRFCRSPGPGGQNVNKVNTKAEVRFNIHDAAWLPTEVAERLQKKEPGRVSKTGDFIVTSSRTR 312
            G+Y  +  VP+  L ++F RS GPGGQNVNKVNTK E+RF++  A W+P EV E+L K+E  RV+K G+ ++TS++ R
Sbjct:   46 GQYQFLGPVPQDRLTIKFARSSGPGGQNVNKVNTKVEIRFHVESADWIPEEVREKLLKRERNRVNKNGELVLTSTQFR 123
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BLAST of mRNA_M-pyrifera_M_contig90810.21046.1 vs. uniprot
Match: A0A5A8E8I1_CAFRO (RF_PROK_I domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E8I1_CAFRO)

HSP 1 Score: 88.6 bits (218), Expect = 7.120e-21
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   73 GEDGEYPRVKVPRHDLLVRFCRSPGPGGQNVNKVNTKAEVRFNIHDAAWLPTEVAERLQKKEPGRVSKTGDFI 291
            G+D E  +++VPR  L + F RS G GGQNVNKVNTKAEVRF+ ++A+WLP +V  RL    P RV+  G+F 
Sbjct:   21 GDDSEAEKIEVPRGALSLGFSRSSGAGGQNVNKVNTKAEVRFDAYNASWLPPDVRSRLLDANPARVNAKGEFF 93
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BLAST of mRNA_M-pyrifera_M_contig90810.21046.1 vs. uniprot
Match: A9V2U5_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V2U5_MONBE)

HSP 1 Score: 92.0 bits (227), Expect = 1.030e-20
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:  103 VPRHDLLVRFCRSPGPGGQNVNKVNTKAEVRFNIHDAAWLPTEVAERLQKKEPGRVSKTGDFIVTSSRTR 312
            +P   L ++F RS GPGGQNVNKVNTKA+VRF++  A WLPTEV E+LQ+++  R++K G+ +V  S TR
Sbjct:   69 IPSDALQIQFARSSGPGGQNVNKVNTKADVRFHVASAEWLPTEVREKLQEQQQSRINKNGELVVAVSDTR 138
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BLAST of mRNA_M-pyrifera_M_contig90810.21046.1 vs. uniprot
Match: A0A3Q3EDG3_KRYMA (Mitochondrial ribosomal protein L58 n=2 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3EDG3_KRYMA)

HSP 1 Score: 90.5 bits (223), Expect = 1.450e-20
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:   70 GGEDGEYPRVKVPRHDLLVRFCRSPGPGGQNVNKVNTKAEVRFNIHDAAWLPTEVAERLQKKEPGRVSKTGDFIVTSSRTR 312
            G +D E  +V +P   L V + RS GPGGQ+VNKVNTKAEVRF++H A W+P +V +++ +K   R++K G+ +VTS  +R
Sbjct:   44 GTDDTEDTQVHIPVDRLSVSYSRSSGPGGQHVNKVNTKAEVRFHLHTADWIPEDVRQKILEKNRNRINKAGELLVTSEMSR 124
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BLAST of mRNA_M-pyrifera_M_contig90810.21046.1 vs. uniprot
Match: A0A6M2FCC5_9ROSI (RF_PROK_I domain-containing protein n=5 Tax=Populus TaxID=3689 RepID=A0A6M2FCC5_9ROSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.270e-20
Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 RTNARMGRLHTSVVMLGKRGKGEGGEDGEYPRVKVPRHDLLVRFCRSPGPGGQNVNKVNTKAEVRFNIHDAAWLPTEVAERLQKKEPGRVSKTGDFIVTSSRTR 312
            + +AR+ ++H  +    +R    G E    P  K+ R  + V F RS GPGGQNVNKVNTK ++RFN+  A WL   + ER+ + E  R++K G+ +++S++TR
Sbjct:   60 KVSARLSQVHQLLQQAEERASAVGNE----PTPKITRGHVTVSFARSGGPGGQNVNKVNTKVDMRFNVKKAYWLSDRIRERIMQMEKNRINKDGEIVISSTKTR 159
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BLAST of mRNA_M-pyrifera_M_contig90810.21046.1 vs. uniprot
Match: A0A2I4CMY5_9TELE (peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4CMY5_9TELE)

HSP 1 Score: 89.4 bits (220), Expect = 4.260e-20
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:   70 GGEDGEYPRVKVPRHDLLVRFCRSPGPGGQNVNKVNTKAEVRFNIHDAAWLPTEVAERLQKKEPGRVSKTGDFIVTSSRTR 312
            G +D E   V +P   L V + RS GPGGQ+VNK NTKAEVRF++H A W+P +V +++ +K   R++K G+ +VTS  +R
Sbjct:   46 GADDAEDTPVHIPLDRLTVSYSRSSGPGGQHVNKTNTKAEVRFHLHTADWIPEDVRQKVLEKNKNRITKAGELLVTSEVSR 126
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90810.21046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EGR0_CAFRO5.750e-2355.00RF_PROK_I domain-containing protein n=1 Tax=Cafete... [more]
UPI0018995B771.960e-2243.27peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Ta... [more]
UPI001C058F172.000e-2149.40peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Ta... [more]
UPI001ED7FE1B2.050e-2148.81peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Ta... [more]
UPI000A2A894A4.900e-2151.28peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Ta... [more]
A0A5A8E8I1_CAFRO7.120e-2153.42RF_PROK_I domain-containing protein n=1 Tax=Cafete... [more]
A9V2U5_MONBE1.030e-2055.71Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A3Q3EDG3_KRYMA1.450e-2048.15Mitochondrial ribosomal protein L58 n=2 Tax=Krypto... [more]
A0A6M2FCC5_9ROSI2.270e-2039.42RF_PROK_I domain-containing protein n=5 Tax=Populu... [more]
A0A2I4CMY5_9TELE4.260e-2046.91peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90810contigM-pyrifera_M_contig90810:3..314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score92.0
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog81824.XP_001747022.1
Preferred nameICT1
KEGG koko:K15033
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0015934,GO:0016020,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032268,GO:0032543,GO:0032984,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0098798,GO:0140053,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
EggNOG free text desc.translation release factor activity, codon nonspecific
EggNOG OGs3A880@33154,COG1186@1,KOG3429@2759
EC3.1.1.29
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Exons1
Model size312
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.0899532-CDS-M-pyrifera_M_contig90810:2..2991622816820.0899532-CDS-M-pyrifera_M_contig90810:2..299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90810 3..299 -
1692278197.5309718-CDS-M-pyrifera_M_contig90810:2..2991692278197.5309718-CDS-M-pyrifera_M_contig90810:2..299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90810 3..299 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.1008008-UTR-M-pyrifera_M_contig90810:299..3141622816820.1008008-UTR-M-pyrifera_M_contig90810:299..314Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90810 300..314 -
1692278197.5500026-UTR-M-pyrifera_M_contig90810:299..3141692278197.5500026-UTR-M-pyrifera_M_contig90810:299..314Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90810 300..314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90810.21046.1prot_M-pyrifera_M_contig90810.21046.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90810 3..299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90810.21046.1

>prot_M-pyrifera_M_contig90810.21046.1 ID=prot_M-pyrifera_M_contig90810.21046.1|Name=mRNA_M-pyrifera_M_contig90810.21046.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
MGRLHTSVVMLGKRGKGEGGEDGEYPRVKVPRHDLLVRFCRSPGPGGQNV
NKVNTKAEVRFNIHDAAWLPTEVAERLQKKEPGRVSKTGDFIVTSSRTR
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mRNA from alignment at M-pyrifera_M_contig90810:3..314-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90810.21046.1 ID=mRNA_M-pyrifera_M_contig90810.21046.1|Name=mRNA_M-pyrifera_M_contig90810.21046.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig90810:3..314- (Macrocystis pyrifera P11B4 male)
CGCACAAATGCGCGCATGGGTCGCCTACACACATCTGTAGTGATGTTGGG
GAAACGGGGGAAGGGCGAAGGTGGCGAGGATGGGGAGTACCCGCGGGTCA
AAGTCCCGCGACATGACCTGCTGGTGCGATTCTGCCGTTCTCCCGGCCCA
GGCGGCCAGAACGTGAACAAAGTCAACACCAAGGCGGAAGTTCGCTTCAA
TATCCACGATGCGGCGTGGCTCCCCACAGAGGTGGCAGAGCGGCTGCAGA
AGAAGGAGCCTGGGAGGGTGTCCAAAACTGGCGACTTTATCGTCACCTCG
TCCCGCACGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90810:3..314-

>mRNA_M-pyrifera_M_contig90810.21046.1 ID=mRNA_M-pyrifera_M_contig90810.21046.1|Name=mRNA_M-pyrifera_M_contig90810.21046.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig90810:3..314- (Macrocystis pyrifera P11B4 male)
ATGGGTCGCCTACACACATCTGTAGTGATGTTGGGGAAACGGGGGAAGGG
CGAAGGTGGCGAGGATGGGGAGTACCCGCGGGTCAAAGTCCCGCGACATG
ACCTGCTGGTGCGATTCTGCCGTTCTCCCGGCCCAGGCGGCCAGAACGTG
AACAAAGTCAACACCAAGGCGGAAGTTCGCTTCAATATCCACGATGCGGC
GTGGCTCCCCACAGAGGTGGCAGAGCGGCTGCAGAAGAAGGAGCCTGGGA
GGGTGTCCAAAACTGGCGACTTTATCGTCACCTCGTCCCGCACGCGCATG
GGTCGCCTACACACATCTGTAGTGATGTTGGGGAAACGGGGGAAGGGCGA
AGGTGGCGAGGATGGGGAGTACCCGCGGGTCAAAGTCCCGCGACATGACC
TGCTGGTGCGATTCTGCCGTTCTCCCGGCCCAGGCGGCCAGAACGTGAAC
AAAGTCAACACCAAGGCGGAAGTTCGCTTCAATATCCACGATGCGGCGTG
GCTCCCCACAGAGGTGGCAGAGCGGCTGCAGAAGAAGGAGCCTGGGAGGG
TGTCCAAAACTGGCGACTTTATCGTCACCTCGTCCCGCACGCGC
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