mRNA_M-pyrifera_M_contig9029.20935.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9029.20935.1
Unique NamemRNA_M-pyrifera_M_contig9029.20935.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9029.20935.1 vs. uniprot
Match: D8LQN4_ECTSI (GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN4_ECTSI)

HSP 1 Score: 384 bits (987), Expect = 9.900e-121
Identity = 193/231 (83.55%), Postives = 209/231 (90.48%), Query Frame = 1
Query:    1 LQVDDDYFPIVESAMDDSREALQRFCQQDPTA-DPRMPPMNLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRMPYSVPGEDELFEWLTGETDETLREGVLVPVRVMKHNDAGVRVRLEGGPGLFGFVPADYVTDDVLPIDPITGQRGNLKQVVKENQLMEAAIMKVDKGRYELKLSLRKSDTQRNPDMWDEP-GESRGFAASGWNRPHTLPRLDDKFD 687
            +QV+DDYFPIVESAMDDSREALQR CQQ  +  DPRMPP NLNDSVNQLDL+AYADEL+RQGEGKRA QLDSIVEEIRYPYRDRRMPYS PGEDELFEWLTGETD TLREGVLVPVR+M+HNDAGVRVRLEGGPGLFGFVP DYVTDDVLP DPITGQ+ +LK VVKENQLMEAAI+KVDKGR+ELKLSLRKSDT  +PD WD P G +R F ASGWNRP +LPRLD+KF+
Sbjct: 1308 VQVEDDYFPIVESAMDDSREALQRLCQQGESGVDPRMPPNNLNDSVNQLDLTAYADELQRQGEGKRAQQLDSIVEEIRYPYRDRRMPYSTPGEDELFEWLTGETDATLREGVLVPVRIMRHNDAGVRVRLEGGPGLFGFVPGDYVTDDVLPPDPITGQKADLKGVVKENQLMEAAIIKVDKGRFELKLSLRKSDTMPDPDKWDAPLGATRVFGASGWNRPASLPRLDEKFN 1538          
BLAST of mRNA_M-pyrifera_M_contig9029.20935.1 vs. uniprot
Match: A0A6H5L9M6_9PHAE (S1 motif domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9M6_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 1.740e-78
Identity = 135/173 (78.03%), Postives = 143/173 (82.66%), Query Frame = 1
Query:  121 LNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYR--------------DRRMPYSVPGEDELFEWLTGETDETLREGVLVPVRVMKHNDAGVRVRLEGGPGLFGFVPADYVTDDVLPIDPITGQRGNLKQVVKENQLMEAAIMKVDKGRYELKLSLRKSDTQRNPD 597
            L+  VNQLDL+AYADEL+RQGEGKRA QLDSIVEEIRYPYR              DRRMPYS PGEDELFEWLTGETD TLREGVLVPVR+M+HNDAGVRVRLEGGPGLFGFVP DYVTDDVLP DPITGQ      VVKENQLMEAAI+KVDK R+ELKLSLRKSDT  +PD
Sbjct:  349 LDVQVNQLDLTAYADELQRQGEGKRAQQLDSIVEEIRYPYRHGNDEMINQMVVHVDRRMPYSTPGEDELFEWLTGETDATLREGVLVPVRIMRHNDAGVRVRLEGGPGLFGFVPGDYVTDDVLPPDPITGQG-----VVKENQLMEAAIIKVDKARFELKLSLRKSDTMPDPD 516          
BLAST of mRNA_M-pyrifera_M_contig9029.20935.1 vs. uniprot
Match: A0A836C842_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C842_9STRA)

HSP 1 Score: 171 bits (432), Expect = 4.080e-45
Identity = 94/218 (43.12%), Postives = 129/218 (59.17%), Query Frame = 1
Query:   37 SAMDDSREALQRFCQQDPTADPRMPPMNLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRMPYSVPGEDELFEWLTGETDETLREGVLVPVRVMKHNDAGVRVRLEG-GPGLFGFVPADYVTDDVLPIDPITGQRGNLKQVVKENQLMEAAIMKVDKGRYELKLSLRKSDTQRNPDMWDEPGESRGFAASGWNRPHTLPRLDDKFD 687
            S MDDSRE L+    +DP   P  P   L D + +LDL  +A ELERQG GKR +QL+++ +EIR+PYR+RR P+    +D++FEW+TGE D TLR G++V   V  H   GVR  +EG    L GF+P D + DD LP D       +L  +   N +  A I  + K R+E++LSLR+SDTQ+NP  W           + W RP +LP +D +FD
Sbjct:  482 SIMDDSREVLRATLDRDPDWRPENPESELKDKLEELDLVEFAGELERQGLGKRRMQLEAVKDEIRFPYRERRRPFQRASDDDVFEWITGEDDATLRPGMVVTCSVSGHTRGGVRATVEGLSRALLGFIPMDKLQDDPLPPD------ADLALMFPRNSIRSAVIADIRKPRFEVQLSLRRSDTQQNPAAW----------GTQWRRPMSLPPIDREFD 683          
BLAST of mRNA_M-pyrifera_M_contig9029.20935.1 vs. uniprot
Match: K0RC99_THAOC (S1 motif domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RC99_THAOC)

HSP 1 Score: 94.4 bits (233), Expect = 1.570e-18
Identity = 65/198 (32.83%), Postives = 100/198 (50.51%), Query Frame = 1
Query:   97 DPRM-PPMNLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRMPYSVPGEDELFEWLTGETDETLREGVLVPVRVMKHNDAGVRVRLEGGPGLFGFVPADYVTDDVLPIDPITGQRGNLKQVVKENQLMEAAIMKVDKGRYELKLSLRKSDTQRNPDMWDEPGESRGFAASGWNRPHTLPRLDDKFD 687
            DP++ PP +  D + +LD+ A+AD +E+ G GK   QL     E+R PY D R P   P    LF+ LTGETD +L  G  V  +V+K+ND G +++LEG   + GF+P   + DD +          +   +V+   ++ A I +V      + LSL++ D ++               +S W RP +L  LD  FD
Sbjct:  688 DPKLLPPESWRDKIEELDIEAFADMIEQNGSGKWLTQLTMTKWELRMPYEDPRKPMEPPQGARLFKLLTGETDASLCPGKHVTGKVIKNNDFGSQIKLEGD--VPGFIPLRNLADDHVE---------SADDIVQVGTVVNAIITQVKMDHMCVDLSLKREDFKKK--------------SSEWERPASLAPLDPYFD 860          
BLAST of mRNA_M-pyrifera_M_contig9029.20935.1 vs. uniprot
Match: A0A7S2P3B4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P3B4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.210e-18
Identity = 64/194 (32.99%), Postives = 97/194 (50.00%), Query Frame = 1
Query:  106 MPPMNLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRMPYSVPGEDELFEWLTGETDETLREGVLVPVRVMKHNDAGVRVRLEGGPGLFGFVPADYVTDDVLPIDPITGQRGNLKQVVKENQLMEAAIMKVDKGRYELKLSLRKSDTQRNPDMWDEPGESRGFAASGWNRPHTLPRLDDKFD 687
            +P     D V +LDL  +A+ +++ G GK    L+ +  E R P++D R P   P  + LF  LTGETD TL  G  V  +VMK+ D G +V+LEG   + GF+P   + DD +          + + +V+   ++ A I +V      + LSL+K D ++               +S W RP +LP LDD FD
Sbjct:  688 VPTERWRDKVEELDLETFAEMIQQSGLGKWLSHLNMVKWEYRLPFQDPRKPMVPPTGETLFRLLTGETDATLCPGKEVTGKVMKNGDFGSQVKLEGD--VPGFIPLRNLADDHVE---------SAEDIVQVGTVVTALITQVKMEHMCVDLSLKKEDFKKK--------------SSEWERPQSLPPLDDHFD 856          
BLAST of mRNA_M-pyrifera_M_contig9029.20935.1 vs. uniprot
Match: A0A433PG63_9FUNG (Transcription elongation factor Spt6 n=2 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PG63_9FUNG)

HSP 1 Score: 90.1 bits (222), Expect = 4.680e-17
Identity = 50/157 (31.85%), Postives = 91/157 (57.96%), Query Frame = 1
Query:  118 NLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRMPYSVPGEDELFEWLTGETDETLREGVLVPVRVMKHNDAGVRVRLEGGPGLFGFVPADYVTDDVLPIDPITGQR-GNLKQVVKENQLMEAAIMKVDKGRYELKLSLRKSDTQ 585
            N  + +N+L L  YA++L R+ +  +   L+ I +E++YPY+D+R P+  P   + F+ ++GET +TLREG++VPV + K        RL+ G             D V+ ID ++ +R  N+ + +  + +    ++K+D+ RY ++LS R+SDT+
Sbjct: 1089 NYPEKLNELMLEDYAEQLYRETKMHKRQTLEQIKQELQYPYKDQRRPFQKPNIMQTFQMISGETPQTLREGLIVPVMITKTKGKWANGRLDSG------------LDAVIGIDHVSDERISNVDEKLHVSDIKNCKVIKIDRERYLVELSSRESDTR 1233          
BLAST of mRNA_M-pyrifera_M_contig9029.20935.1 vs. uniprot
Match: A0A3B4XSJ0_SERLL (Transcription elongation factor spt6 n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4XSJ0_SERLL)

HSP 1 Score: 87.4 bits (215), Expect = 3.970e-16
Identity = 58/171 (33.92%), Postives = 87/171 (50.88%), Query Frame = 1
Query:  133 VNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRMPYSVPGEDELFEWLTGETDETLREGVLVPVRVMKHNDAG--------VRVRLEGGPGLFGFVPADYVTDDVLPIDPITGQRGNLKQVVKENQLMEAAIMKVDKGRYELKLSLRKSDTQRNPDMWDEPGES 621
            +  LDL A+A+ELERQG G + + L  I  E+   Y+D R+PY VP  +E+F  LT ET ET   G      V  H D+G        VR RL+ G  + GF+P  +++D V+          + ++ VK    +   IMK+D  ++ + L+ R SD     + W  P +S
Sbjct: 1061 LKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRVPYRVPNTEEVFNLLTKETPETFYIGNTHCTEVWNHFDSGSCPGQAIGVRSRLDNG--VQGFIPTKFLSDKVVK---------HPEERVKVGMTVHCRIMKIDIEKFSVDLTCRTSDLMDKANEWKLPKDS 1220          
BLAST of mRNA_M-pyrifera_M_contig9029.20935.1 vs. uniprot
Match: A0A8K1CHS1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHS1_PYTOL)

HSP 1 Score: 87.0 bits (214), Expect = 5.360e-16
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 1
Query:  121 LNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRMPYSVPGEDELFEWLTGETDETLREGVLVPVRVMKHNDAG--VRVRLEGG--PGLFGFVPADYVTDD 441
            + D++++LDL AYA  LE+Q +G + L L+ I  E+RYPY D+R PY +P E+ELF  L+GE  +T +EG++VP  ++ H   G  VRVRL+ G    L   +  DY+TDD
Sbjct: 1076 IQDALSELDLPAYASRLEQQKKGPKLLTLEYIKRELRYPYFDKRHPYQMPREEELFVLLSGENKDTFQEGIIVPCTLL-HMAGGEFVRVRLQNGMRATLKKDLLPDYLTDD 1185          
BLAST of mRNA_M-pyrifera_M_contig9029.20935.1 vs. uniprot
Match: Q55A48_DICDI (Transcription elongation factor spt6 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55A48_DICDI)

HSP 1 Score: 86.3 bits (212), Expect = 9.970e-16
Identity = 56/159 (35.22%), Postives = 86/159 (54.09%), Query Frame = 1
Query:  133 VNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRMPYSVPGEDELFEWLTGETDETLREGVLVPVRVMKHNDAGVRVRLEGGPGLFGFVPADYVTDDVLPIDPITGQRGNLKQVVKENQLMEAAIMKVDKGRYELKLSLRKSDTQRNPDMWDE 609
            +++LDL  +AD +E   +      L  I +E+  P+ D R PY  P  D +FEWLTGET+++LR G LV V  ++  D  V+ RL+ G  L G +P D ++D+        G+  +L + V  N      +M VDK ++ + LS + SD   NP  W+E
Sbjct: 1099 LDRLDLDGFADIIESHEDRPARKLLYFIKKELTNPFADIRHPYEEPSADTIFEWLTGETNQSLRRGTLVTVTTIRTFDNSVKCRLDNG--LEGSIPTDCISDN--------GETKSLGRGVTIN----CRVMGVDKYQFTVSLSCKPSDL--NPSFWEE 1241          
BLAST of mRNA_M-pyrifera_M_contig9029.20935.1 vs. uniprot
Match: A0A3N4M1T4_9PEZI (Transcription elongation factor Spt6 (Fragment) n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4M1T4_9PEZI)

HSP 1 Score: 85.5 bits (210), Expect = 1.790e-15
Identity = 57/182 (31.32%), Postives = 95/182 (52.20%), Query Frame = 1
Query:  118 NLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRMPYSVPGEDELFEWLTGETDETLREGVLVPVRVMKHNDAGVRVRLEGGPGLFGFVPADYVTDDVLPIDPITGQRGNLKQVVKENQLMEAAIMKVDKGRYELKLSLRKSDTQ----------RNPDMWDEPGESRGFA 633
            N  + VN L L  YA+ELE+    K+   L++I  E+++PY + R  +     + +F  LTGET+ETL EG++VPV V +  D  + VRL+ G  + G VP D + +  + +            V    Q ++A ++ +++  +  +LSLR+SD +          R+P+ WD+  E R  A
Sbjct: 1039 NQENKVNDLILEEYAEELEKTFNQKKRATLETIRAELQHPYEELRKAFKTLSFERIFTMLTGETNETLFEGMVVPVNVRRVADRYISVRLDCG--IDGNVPQDMIDNSGVSVHA----------VYAVGQTVQAKVLSLERKSFFAELSLRESDIRNGLRRFDRQDRDPEEWDDVREERDRA 1208          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9029.20935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQN4_ECTSI9.900e-12183.55GTB1 RNA binding / hydrolase, acting on ester bond... [more]
A0A6H5L9M6_9PHAE1.740e-7878.03S1 motif domain-containing protein n=1 Tax=Ectocar... [more]
A0A836C842_9STRA4.080e-4543.12S1 motif domain-containing protein n=1 Tax=Tribone... [more]
K0RC99_THAOC1.570e-1832.83S1 motif domain-containing protein (Fragment) n=1 ... [more]
A0A7S2P3B4_9STRA5.210e-1832.99Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A433PG63_9FUNG4.680e-1731.85Transcription elongation factor Spt6 n=2 Tax=Endog... [more]
A0A3B4XSJ0_SERLL3.970e-1633.92Transcription elongation factor spt6 n=1 Tax=Serio... [more]
A0A8K1CHS1_PYTOL5.360e-1645.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
Q55A48_DICDI9.970e-1635.22Transcription elongation factor spt6 n=1 Tax=Dicty... [more]
A0A3N4M1T4_9PEZI1.790e-1531.32Transcription elongation factor Spt6 (Fragment) n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9029contigM-pyrifera_M_contig9029:57..5767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score390.6
Seed ortholog evalue5.1e-106
Seed eggNOG ortholog2880.D8LQN4
KEGG koko:K11292
Hectar predicted targeting categoryother localisation
EggNOG free text desc.obsolete transcription factor activity, core RNA polymerase II binding
EggNOG OGsCOG2183@1,KOG1856@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko03036
Exons6
Model size690
Cds size690
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9029.20935.1prot_M-pyrifera_M_contig9029.20935.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9029 57..5767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.698925-CDS-M-pyrifera_M_contig9029:56..1881622816814.698925-CDS-M-pyrifera_M_contig9029:56..188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 57..188 +
1692278194.4239526-CDS-M-pyrifera_M_contig9029:56..1881692278194.4239526-CDS-M-pyrifera_M_contig9029:56..188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 57..188 +
1622816814.713511-CDS-M-pyrifera_M_contig9029:788..8981622816814.713511-CDS-M-pyrifera_M_contig9029:788..898Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 789..898 +
1692278194.439618-CDS-M-pyrifera_M_contig9029:788..8981692278194.439618-CDS-M-pyrifera_M_contig9029:788..898Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 789..898 +
1622816814.7250917-CDS-M-pyrifera_M_contig9029:2567..26521622816814.7250917-CDS-M-pyrifera_M_contig9029:2567..2652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 2568..2652 +
1692278194.4489584-CDS-M-pyrifera_M_contig9029:2567..26521692278194.4489584-CDS-M-pyrifera_M_contig9029:2567..2652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 2568..2652 +
1622816814.7380755-CDS-M-pyrifera_M_contig9029:3067..32111622816814.7380755-CDS-M-pyrifera_M_contig9029:3067..3211Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 3068..3211 +
1692278194.4584734-CDS-M-pyrifera_M_contig9029:3067..32111692278194.4584734-CDS-M-pyrifera_M_contig9029:3067..3211Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 3068..3211 +
1622816814.7483323-CDS-M-pyrifera_M_contig9029:4980..51091622816814.7483323-CDS-M-pyrifera_M_contig9029:4980..5109Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 4981..5109 +
1692278194.4682498-CDS-M-pyrifera_M_contig9029:4980..51091692278194.4682498-CDS-M-pyrifera_M_contig9029:4980..5109Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 4981..5109 +
1622816814.762116-CDS-M-pyrifera_M_contig9029:5677..57671622816814.762116-CDS-M-pyrifera_M_contig9029:5677..5767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 5678..5767 +
1692278194.483801-CDS-M-pyrifera_M_contig9029:5677..57671692278194.483801-CDS-M-pyrifera_M_contig9029:5677..5767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 5678..5767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9029.20935.1

>prot_M-pyrifera_M_contig9029.20935.1 ID=prot_M-pyrifera_M_contig9029.20935.1|Name=mRNA_M-pyrifera_M_contig9029.20935.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=230bp
LQVDDDYFPIVESAMDDSREALQRFCQQDPTADPRMPPMNLNDSVNQLDL
SAYADELERQGEGKRALQLDSIVEEIRYPYRDRRMPYSVPGEDELFEWLT
GETDETLREGVLVPVRVMKHNDAGVRVRLEGGPGLFGFVPADYVTDDVLP
IDPITGQRGNLKQVVKENQLMEAAIMKVDKGRYELKLSLRKSDTQRNPDM
WDEPGESRGFAASGWNRPHTLPRLDDKFDA
back to top

mRNA from alignment at M-pyrifera_M_contig9029:57..5767+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9029.20935.1 ID=mRNA_M-pyrifera_M_contig9029.20935.1|Name=mRNA_M-pyrifera_M_contig9029.20935.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5711bp|location=Sequence derived from alignment at M-pyrifera_M_contig9029:57..5767+ (Macrocystis pyrifera P11B4 male)
CTCCAGGTTGACGACGACTACTTCCCGATTGTGGAGAGCGCGATGGACGA CTCCAGGGAGGCCCTTCAGCGGTTCTGCCAGCAGGACCCCACCGCTGACC CGAGGATGCCGCCGATGAACCTCAACGACTCGGTGAGGATCGGTTCCGAT GTGACCGCGGTAGATGAGCAGTGATGGTGATTGTGGCGATTCTGATGATG ATTTTTTGATGATGATGGGACGATGGTTATGATCTTGACGGTGATGAGGA CGACGAGGATGATGACGCTCTCACATTGCTAGCCCTGCCCTTTTCCCGAA GAGCTCGTATAGGATGACGATTATGAGGGTAACGATGATGGTGGTGATGA TGATGATGACGGTGATGCTCTCACATGGTTAGCCCATTTCCTTAAACTCT AGCCGGTGGTCACAAAAAAAACATATTTAGCAACGTCCCGACGAAAGAAA ACGATTACAGTGGACCCAACACCTTCGCTCCTTCCGAACGAAATGGAGCC AACGTACGGTACGTAGATCCTGAGAGATGAAATCGGCCGGTTAAGAAAGC AGGGCGTAACAAGACCGGTTCCGCCTTTTCCAACCTCTCGGTTTTGTCGT ACGAGCACACAGAATATGAACCAAGCACCTAATTCTCGATACACCAGCAA ACGACAGATTATTTCTCGAAACGGTTCCCGATCTCTTTTGTTGAGTGATA ACCTTGTCCTTTTTTGTCGTGGGGTGCGGTAGGTGAACCAACTGGACCTG TCTGCCTACGCGGACGAGCTGGAGAGGCAGGGCGAGGGAAAGCGGGCCCT GCAGTTAGACAGCATCGTCGAGGAAATTCGCTACCCCTACAGGTGCGGCG GACTACTGTAGCCTTCTCCACAATATTATAGAGCCAAATATGGGATACAC GGCGGTATTATAGAAAACGGGGGAAACTGCTGCGCAAGTCATCTGTAATA TGGTCTCACCAGTGAGCAGTTGGCGGTTAGTCGATATATATCTATACATA TTTTTTTTGCCGAAATTTCGCCGGACAAAGCTCCTTCGGGTAGGGCCGGG GTTCGGATGAGGGTCATACAGGGCTTAGGGTAGAATTGCTGGTCGTATTG AATACGATCTGATATCATACTAGACGCGTGTGCTACGATCGGGGTAGCCT ACTTTGGCCGAAACATTTTTGACTGACTTAAGAAACCTCTCAACCGAGGA CCTCTCCAGTATCGTTGGTCCCCATTTTGGTCTACGGTATAATTCGAACA ATGCCTTCTTATGGCCGAGAGGTTAAGCGTTCATTTTCTTCTCAAAATCA TTTTTTGGGCGGGATGTAGAAATCATATAGTGAGGAGCGCCAAAAAACGT AGGTGCTCCCCCTATTTTATGGTAGCAGCGTCAGTACTGGAACCGCACGG GGGCCACATGACATTCCCCCAATTCCGTACCTGGTGCGAACTAAGACTCT GTCGCTATACTAGCATTTACCAGGTATAGGATACCTGGTACTATTCTTGA GAAGTTGGCATGCGGTGGACGTGGACAATCCTACTGTAGTCAGCTGTGTC AAAAGGTCTCGTGGAGTACGCATTTCAACGCCACAGGAGATTGTGAAGCC AATACAAGCGGCGCGCGTATGCACGGTGCGATCGATCTGCTGTCGGCAAG CACCGATGTAGTCGCTATCAACAGCCACGGCGTGCTCTCAAGAATACTGT CTGCCATAGAGCATGATGCCAAGCGACTGCTGTTGGGACGGTTTTTTGTG TTGGCCTAGATTAAAATCAAGCAAGTTAACAGCTTTTCAAGGGCCAAGAT GAGCCAATTTTCACCAAAAATGAACTATCTGTGGAGGTTTTGGTTTTCGT AAAATCGGTACTTATACGTGTCAGCTCTCATGGCTGGACATTTTGATGTG TGTGTGTGTGTGTGTGTGTGTTTTTTTTTCAGTTTTTCGTCAGCGTGGGC GGAGCGATTGTCTGTTTATCGCTGTTCGTGCTCTGTCTGGGCCAACGCGG TCTCTCCCTTTTCTGATGGTATTTCAGTGTATTGCCACAACGATTTTTTT CCTTTGATGCCCTGGCAACACGCGCGGAGCAATACTCTGTCTGCATTACT ACTGCTGTAAGTACAAAGCCTCGTAATTTTTCATTGCATTTTCTGCACTA CCAGTACACAATATTTGTACGTACCTGGTACGTATGTTAGTATTAGGGGG GACCATAGTGAACAGGACCTACGGTACACACAAAAACCTATATATCTACC TTTTTTTATTAGCAATATTTGGTCCTATTTATTACTATGGCCCCGTAATA GTAGTATCATCTGAACTTGCGCTTTAGAAACGGGTTTCTTGACGATGTTG TCGTATTACTCTTCAATCCAGAACTCTTTTTGTTTCCCCCCCCCCCCCAG CATTTTCTGCACTACCTCGTGCACAACGCTACAGCAAGACTAGCCTTTTT AAACGTGCGCTCGTGATGGTTTTTCTTGACGCTGTTGGCGTGTTTCTCGC GGGTGAGACAGGGACCGAAGGATGCCCTATTCAGTTCCGGGGGAAGACGA GCTGTTCGAGTGGCTCACTGGGGAGACAGACGAAACACTGCGCGAGGTGA GCTGAACAGACCGCTGAAAGTCACCCCCCCCCCCCGCCCCCGCAGCGGTG TCTGCTTGGTACGGTGAAAACCCGACGTGCTCCGTCCCGGCATTGTAGGG ATGCGAGGGTCTATGGTCACAAGACTACGGCCATGCATCATATTGAGTAC CCCCCGCTCCCCCCGTTCTGCCGAAAAAACCACAAAATCATCGAACGATT CAGGCTGATGTATAGCGTGTCCTTGATGAGGTCGTATCTAACTCGTAGCA TACATGAGCAAACAGACGAAACCCAACATGCCACAGCAGTAGCGCTACTG GCTGCCTGGTCTCGATAGCTTCCACAAAAAAAAAACTTGTCCGGTTGTGG TGTGTCATCATAAATAGGAAGCACCCCCTCCATGTTGATGCGCCCGTTTT GGCGTTTGCAGGGAGTGCTGGTGCCGGTGAGGGTGATGAAGCACAACGAT GCGGGAGTTCGAGTAAGACTGGAAGGCGGACCGGGGCTGTTTGGTTTCGT CCCCGCTGACTACGTGACGGATGACGTGCTTCCCATCGACCCCATCACTG GCCAGGTGTGTGTGGATGTTATTACCAAGCATCTTGTTTGAAGGAAGACA AAAAACAAATCACGTCAGCTATGAGATCGATTTTTTCCTCAAAATTCATA TTTGCAAGCTGCGTGGGAGATTTATGTTGAGATCCAAGCGTACCACAGGG AGTGTAGGTTTGGAAGTGGTCTTAAAAAATCTGACGGTTTTTTGTACTCC ACCTATTCGGTACATACATGAAAGAACATACGGTGTGTAGTTTACGAAGT ATTATACCAGGTATATATGTATGAAGTATAATATATATTATATTTCGCTG TTTATTTCGTTTTGATTAGCATCGTTTTTAGTTTTCGGCTTGTGGTCGGA ATTATTGCGCGGGCCGGGGTCTCCTTGTTTGTTTACCCTCTGGTTGATTC TGTTTTTTTTTTTTTCGCCGGTGGTGGTAGTTTGGTGGCGGCGATCGGCC AAAATTCAAGCTGGTCCATGGTTCATGTTTCGCGAGTTTTCTCTCTCTCG CGGAGAAATCTGTTTTTTCGTTGACGACTTTTTTCTCTTTGGCGCGTCTG CTGTCTGTTCACCCAGGAGAATCCTGTCAGTAGTAAGCTGGAAACGTACT AGAGCCTGGTTCCGCAGGCTCATCAACACTCGGCTTAGGCAAACATCACA ACACCACGTACTGTAGCGCACCACCGGTTTGCTAGGGCTAGTTAGCTGAC TACAAGTCGCCGCCTAGTTATTTGTCGGCCATGTGGGTACTACAGAAGTT GCCTGCGGTAACTTGCGGAGTACCAAGTATGTCTGAGTACCCGGCTGGAG CGTTTATGGCTCGTAGGGTTGCGCTTTATGCTCATGAATAGTTGACGCCA GGTAGGTGGCTTGCTCCGCCACTCAACTAATAACTAGCCTTATTAGTGAA GTCCAACCAAGGCATGCCTTGCTCACGGCCCTAGTTGGCTTACTACGCCA TCCAACTACTTGCTATTACGGGGGTCCATAGTTAATAGGACCTATGTTAT ACATAAAAAAACTATATATATATATACCTAGTTTTACTAAAAAAAATTGG TCCTATTAACTATGGACCCCCGTAATAGCCCAATCGATGAAATCCAGCGG AGGCATGCCTCACCCATGGCCCTAGTTGGCTTACTAAGCCGCCCATCTAA TAACTAGCCCTTATAATGGAGTGCAGCCAAGGCATGCCTTACCCACAGCC CTGATTAGCTTACTATTACGGGGGACCATAGTTAATAGGACCGGTAGTAC ACACAAAATACCTAGATATTTACCTATTTTCACTAACAGTATTTTGTCCT GTTTACTATCGTCACCCGTAATACGCCACACAAGTACTAATTAGCCTTCG GAATGAATGAAGTGCAGCCAAGGCATGCCTTTCTCACTGCCCTACCGATC GCCGGTACGTCAACCGCACGCTGAGGACCGTTTCCTTCGCCATCTGTTTA GCGCTTGTCTTTACTGTTGCTTCTTTGTGGCCGACCATTCCGGGGGGGCT AATGTTGTAAGAATCAGAACTCACGATGGACCCGAAAACACCACAATCCC TCTGATGGTCACCTATTTGCTTCTGATTAGGATGAATATGGTATGTCCCC TCATGATAATGTTGTGTCGCCGATACTGTTTGTAGAGACGCACTGTTCTT ATTTTTGTTTGTTGGTTTGTTTGTTTGTTTTTTTCGTCTCGCTCGTTTTC CGCTCGGCCGCAAAACACGTTTTCTTAAAAAAAACGTTTCGCCCGGGCTT CGCTCTGCCTCGTGGAATTCATAGAGGGGAAACCTGAAGCAGGTGGTGAA GGAAAACCAGCTGATGGAGGCGGCCATCATGAAGGTGGACAAGGGGCGCT ACGAGCTGAAGCTGTCCCTCAGGAAGAGCGACACGCAACGCAACCCGGAT ATGGTTAGTTCCTTAAGCACCCCCATCTGATACCCATCTGCTTCCTTTTG GCTTGCTTTTCTCGCAAGATGGTGTTGTCCATGGACGCCGCCGCCCCCGC CCCCTCTCGCCCCCTGCCCGACTCGACACGGCCCCAAGCCCGGCCTGCCC CGATTCGGTTCGACCCTACCCGGTCCGATCCGTGATAAAACACTGCCTTG CCGTTGACCAATCAGTGACTACACAAATGTCTTGTCGTCGACCCATTGGT GATTTAGCGTAACAAGTACCTTGTGGTCGACCAATCGGTGGTGAGATACC TTGTCGTCAGCCAATGGGTGATCAAGAAAATGCCTCGTCGTCGACCAATC AGTGATGAAAAAACTACCTTGTCGCCCCACCGGTGGCGAAAAAAGGCCTT GTCGTCGACCCTTTGGCGATGGGATGCCTAGTAGTCGACCAATCGGTGAT GAGATGCCTTGTCTTCGCCCAATCGGTGATGAAATGCGTAGTCGTCGACC AATCAGCGATGAGATAGATGCCTTGTCGTCAACCAATCGGTTGTGAATAA ATGCCTTTCGTCGTCGAGCAGTGGGATGAACCGGGCGAGTCGAGAGGATT CGCGGCGTCTGGCTGGAACCGACCGCATACGCTGCCACGCTTGGACGACA AGTTCGACGCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9029:57..5767+

>mRNA_M-pyrifera_M_contig9029.20935.1 ID=mRNA_M-pyrifera_M_contig9029.20935.1|Name=mRNA_M-pyrifera_M_contig9029.20935.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1380bp|location=Sequence derived from alignment at M-pyrifera_M_contig9029:57..5767+ (Macrocystis pyrifera P11B4 male)
CTCCAGGTTGACGACGACTACTTCCCGATTGTGGAGAGCGCGATGGACGA
CTCCAGGGAGGCCCTTCAGCGGTTCTGCCAGCAGGACCCCACCGCTGACC
CGAGGATGCCGCCGATGAACCTCAACGACTCGCTCCAGGTTGACGACGAC
TACTTCCCGATTGTGGAGAGCGCGATGGACGACTCCAGGGAGGCCCTTCA
GCGGTTCTGCCAGCAGGACCCCACCGCTGACCCGAGGATGCCGCCGATGA
ACCTCAACGACTCGGTGAACCAACTGGACCTGTCTGCCTACGCGGACGAG
CTGGAGAGGCAGGGCGAGGGAAAGCGGGCCCTGCAGTTAGACAGCATCGT
CGAGGAAATTCGCTACCCCTACAGGTGAACCAACTGGACCTGTCTGCCTA
CGCGGACGAGCTGGAGAGGCAGGGCGAGGGAAAGCGGGCCCTGCAGTTAG
ACAGCATCGTCGAGGAAATTCGCTACCCCTACAGGGACCGAAGGATGCCC
TATTCAGTTCCGGGGGAAGACGAGCTGTTCGAGTGGCTCACTGGGGAGAC
AGACGAAACACTGCGCGAGGGACCGAAGGATGCCCTATTCAGTTCCGGGG
GAAGACGAGCTGTTCGAGTGGCTCACTGGGGAGACAGACGAAACACTGCG
CGAGGGAGTGCTGGTGCCGGTGAGGGTGATGAAGCACAACGATGCGGGAG
TTCGAGTAAGACTGGAAGGCGGACCGGGGCTGTTTGGTTTCGTCCCCGCT
GACTACGTGACGGATGACGTGCTTCCCATCGACCCCATCACTGGCCAGGG
AGTGCTGGTGCCGGTGAGGGTGATGAAGCACAACGATGCGGGAGTTCGAG
TAAGACTGGAAGGCGGACCGGGGCTGTTTGGTTTCGTCCCCGCTGACTAC
GTGACGGATGACGTGCTTCCCATCGACCCCATCACTGGCCAGAGGGGAAA
CCTGAAGCAGGTGGTGAAGGAAAACCAGCTGATGGAGGCGGCCATCATGA
AGGTGGACAAGGGGCGCTACGAGCTGAAGCTGTCCCTCAGGAAGAGCGAC
ACGCAACGCAACCCGGATATGAGGGGAAACCTGAAGCAGGTGGTGAAGGA
AAACCAGCTGATGGAGGCGGCCATCATGAAGGTGGACAAGGGGCGCTACG
AGCTGAAGCTGTCCCTCAGGAAGAGCGACACGCAACGCAACCCGGATATG
TGGGATGAACCGGGCGAGTCGAGAGGATTCGCGGCGTCTGGCTGGAACCG
ACCGCATACGCTGCCACGCTTGGACGACAAGTTCGACGCCTGGGATGAAC
CGGGCGAGTCGAGAGGATTCGCGGCGTCTGGCTGGAACCGACCGCATACG
CTGCCACGCTTGGACGACAAGTTCGACGCC
back to top