mRNA_M-pyrifera_M_contig89203.20677.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89203.20677.1
Unique NamemRNA_M-pyrifera_M_contig89203.20677.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89203.20677.1 vs. uniprot
Match: F2TZB6_SALR5 (JmjC domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TZB6_SALR5)

HSP 1 Score: 67.0 bits (162), Expect = 1.730e-10
Identity = 45/138 (32.61%), Postives = 65/138 (47.10%), Query Frame = 1 
Query:    1 VRAGLVPYASTYAGAEMNATTMDLGDYITSYLLNPNPNP-----------TLTPPLYVFDNEVLTKSFVVANSLPIPSFNTSIRQFI-----IGPKDSGAMPHIHDGAWNILFLGRKLWVITPPSCAEFALLPASEWF 366
            V    VPYASTY  +  +  TM L  ++  ++   N +            T    +YVFD  VL +   + +S+ +P   +S  Q +     +GP  SGA PH H  A N+L  GRK W + PP  A F ++ A  WF
Sbjct:  382 VSVAAVPYASTYGHSTTH--TMPLRTFVQQHMGYSNNHHQXXXXQAQDCRTTDTCMYVFDGSVLHRHPEMLHSIGLPFVVSSTEQLVLAQLMVGPTGSGAPPHFHGQAINVLVQGRKQWQLFPPQHAFFHMVTAHAWF 517
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89203.20677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
F2TZB6_SALR51.730e-1032.61JmjC domain-containing protein n=1 Tax=Salpingoeca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89203contigM-pyrifera_M_contig89203:5..370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog81824.XP_001748393.1
KEGG koko:K21415
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.1637826-CDS-M-pyrifera_M_contig89203:4..3701622816802.1637826-CDS-M-pyrifera_M_contig89203:4..370Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89203 5..370 -
1692278187.2715328-CDS-M-pyrifera_M_contig89203:4..3701692278187.2715328-CDS-M-pyrifera_M_contig89203:4..370Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89203 5..370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89203.20677.1prot_M-pyrifera_M_contig89203.20677.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89203 5..370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89203.20677.1

>prot_M-pyrifera_M_contig89203.20677.1 ID=prot_M-pyrifera_M_contig89203.20677.1|Name=mRNA_M-pyrifera_M_contig89203.20677.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
VRAGLVPYASTYAGAEMNATTMDLGDYITSYLLNPNPNPTLTPPLYVFDN
EVLTKSFVVANSLPIPSFNTSIRQFIIGPKDSGAMPHIHDGAWNILFLGR
KLWVITPPSCAEFALLPASEWF
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mRNA from alignment at M-pyrifera_M_contig89203:5..370-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89203.20677.1 ID=mRNA_M-pyrifera_M_contig89203.20677.1|Name=mRNA_M-pyrifera_M_contig89203.20677.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig89203:5..370- (Macrocystis pyrifera P11B4 male)
GTTCGAGCAGGTCTTGTCCCATACGCTTCAACGTATGCAGGTGCAGAGAT
GAACGCAACAACTATGGATCTTGGAGACTACATCACCTCCTATCTCCTCA
ACCCAAACCCAAACCCAACACTCACCCCTCCTCTTTACGTCTTTGACAAT
GAGGTTCTCACCAAGTCCTTTGTTGTTGCCAACTCCCTTCCCATCCCATC
ATTTAACACGTCAATTCGTCAATTCATCATTGGACCAAAAGACTCTGGTG
CAATGCCACATATTCACGACGGTGCCTGGAATATCCTGTTTCTTGGCAGA
AAGCTTTGGGTGATCACACCACCATCTTGTGCAGAATTTGCGCTTCTTCC
AGCTTCTGAGTGGTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89203:5..370-

>mRNA_M-pyrifera_M_contig89203.20677.1 ID=mRNA_M-pyrifera_M_contig89203.20677.1|Name=mRNA_M-pyrifera_M_contig89203.20677.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig89203:5..370- (Macrocystis pyrifera P11B4 male)
GTTCGAGCAGGTCTTGTCCCATACGCTTCAACGTATGCAGGTGCAGAGAT
GAACGCAACAACTATGGATCTTGGAGACTACATCACCTCCTATCTCCTCA
ACCCAAACCCAAACCCAACACTCACCCCTCCTCTTTACGTCTTTGACAAT
GAGGTTCTCACCAAGTCCTTTGTTGTTGCCAACTCCCTTCCCATCCCATC
ATTTAACACGTCAATTCGTCAATTCATCATTGGACCAAAAGACTCTGGTG
CAATGCCACATATTCACGACGGTGCCTGGAATATCCTGTTTCTTGGCAGA
AAGCTTTGGGTGATCACACCACCATCTTGTGCAGAATTTGCGCTTCTTCC
AGCTTCTGAGTGGTTTGTTCGAGCAGGTCTTGTCCCATACGCTTCAACGT
ATGCAGGTGCAGAGATGAACGCAACAACTATGGATCTTGGAGACTACATC
ACCTCCTATCTCCTCAACCCAAACCCAAACCCAACACTCACCCCTCCTCT
TTACGTCTTTGACAATGAGGTTCTCACCAAGTCCTTTGTTGTTGCCAACT
CCCTTCCCATCCCATCATTTAACACGTCAATTCGTCAATTCATCATTGGA
CCAAAAGACTCTGGTGCAATGCCACATATTCACGACGGTGCCTGGAATAT
CCTGTTTCTTGGCAGAAAGCTTTGGGTGATCACACCACCATCTTGTGCAG
AATTTGCGCTTCTTCCAGCTTCTGAGTGGTTT
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