mRNA_M-pyrifera_M_contig89130.20665.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89130.20665.1
Unique NamemRNA_M-pyrifera_M_contig89130.20665.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A3C0HLK4_9ACTN (Pseudouridine synthase (Fragment) n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C0HLK4_9ACTN)

HSP 1 Score: 358 bits (918), Expect = 3.020e-122
Identity = 172/255 (67.45%), Postives = 202/255 (79.22%), Query Frame = 1
Query:    4 LDGRPARTASTRVNEDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPGRPFLHAGTLRFVHPVTGAPVAVESPLPDDL 768
            +DGRP  TAS +V+    + +ELP P DP P P   V F V +EDDDV+V+DKPAG+VVHPGAG A+ TLV+GLVARYPE+  +GE HRPGIVHRLDRGTSGLLVVAR+  AY  +V QMS+HEPER+Y AL WGH ++D+G IDAPIGRS RHPTRM V+E GR A+THY V++RF  P   +LV CRL+TGRTHQIRVHLRAI HPVVGDRDYDGGRPGLDPGRPFLHA  L F HPV+   ++ E+ LPDDL
Sbjct:    1 VDGRPITTASRKVDAGMVVTIELPPPDDPTPAPQVDVEFTVVHEDDDVIVVDKPAGLVVHPGAGQADGTLVNGLVARYPELLRIGEVHRPGIVHRLDRGTSGLLVVARSEEAYVGLVGQMSAHEPERVYLALAWGHFDTDAGTIDAPIGRSARHPTRMTVTENGRHAITHYRVERRFEMPVACSLVQCRLDTGRTHQIRVHLRAINHPVVGDRDYDGGRPGLDPGRPFLHAAHLLFRHPVSHETLSFEAALPDDL 255          
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A7K1Z9K7_9ACTN (Pseudouridine synthase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z9K7_9ACTN)

HSP 1 Score: 347 bits (890), Expect = 5.100e-117
Identity = 171/262 (65.27%), Postives = 204/262 (77.86%), Query Frame = 1
Query:    4 LDGRPARTASTRVNEDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPGRPFLHAGTLRFVHPVTGAPVAVESPLPDDLVECVAAC 789
            +DG  A + S RV    T+E  +P P DPRP  DP+V F V YED  ++V+DKPA +VVHPGAGH ++TLV+GL++RYPE+A VGE  RPGIVHRLDR TSGLLVVART  AY ++V QMS+HEPER+Y AL WGH+E+D G IDAPIGRSPRHPTRMAV ++GR A THY V +RF+ PR+T+L+ CRLETGRTHQIRVHL+AIGHPVVGDR YDG RPG++  RPFLHA  LRF HPVT   V +ESPL  DLV  +  C
Sbjct:   65 IDGVVATSGSARVETGSTIEALVPVPTDPRPTADPAVEFRVVYEDPHILVVDKPADLVVHPGAGHKDSTLVNGLLSRYPEIASVGEPQRPGIVHRLDRTTSGLLVVARTSEAYGQLVVQMSAHEPERVYQALAWGHLEADRGTIDAPIGRSPRHPTRMAVIDRGRPARTHYEVVERFAEPRETSLLECRLETGRTHQIRVHLKAIGHPVVGDRAYDGHRPGIELDRPFLHACALRFRHPVTDERVELESPLAADLVGTLQLC 326          
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A3M2GPM5_ACTSX (Pseudouridine synthase n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GPM5_ACTSX)

HSP 1 Score: 323 bits (827), Expect = 1.530e-107
Identity = 159/263 (60.46%), Postives = 189/263 (71.86%), Query Frame = 1
Query:    1 RLDGRPARTASTRVNEDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPGRPFLHAGTLRFVHPVTGAPVAVESPLPDDLVECVAAC 789
            R+ GR     ++R++    L VELP PVD RP PDPSV   + + DDD++++DKPAG+VVHPG GH   TLVHGL+AR+PE+ADVGE HRPGIVHRLDRGTSGLL VART  A+  +    +     RIY AL WG  E+++G ++AP+GRS RHPTRM V+ +GR AVTHY V  R   PR   L+ CRLETGRTHQIRVHL AIGHPVVGDRDY G RPGLDPGRPFLHA  LR  HP TG  +   SPLP +LV   A+C
Sbjct:   46 RVAGRVVTAPASRLSAGDELAVELPPPVDARPTPDPSVVVDLVHVDDDLIIVDKPAGLVVHPGHGHTGGTLVHGLLARFPELADVGEPHRPGIVHRLDRGTSGLLAVARTAEAHRRLTDAFAQRRAGRIYLALAWGAPETEAGTVEAPVGRSNRHPTRMTVTTRGRDAVTHYRVLARSDRPRPVALLRCRLETGRTHQIRVHLAAIGHPVVGDRDYGGARPGLDPGRPFLHAAVLRVPHPRTGETIEAVSPLPAELVAVAASC 308          
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A6N8YB26_9ACTN (Pseudouridine synthase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N8YB26_9ACTN)

HSP 1 Score: 311 bits (798), Expect = 2.750e-103
Identity = 158/270 (58.52%), Postives = 193/270 (71.48%), Query Frame = 1
Query:    1 RLDGRPARTASTRVNEDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPG-------RPFLHAGTLRFVHPVTGAPVAVESPLPDDLVECVAAC 789
            RLDG    + + RV   ++L +++    DP P PD  V F   +ED DV+V+DKPAG+VVHPGAGH  ATLV+GL+ARYPE+A VG+ +RPGIVHRLDRGTSGLLVVART  A+  +V QM SHEPER+Y+ALVWGH E+ +G++DAP+GRS R+P RM V+++GR A THY V+QRFS P    L+ CRLETGRTHQIRVHLRAIGH VV D  Y  G      G       RPFLHA +L F HPVT   V  ESPLP +L E +A+C
Sbjct:   42 RLDGTVITSGARRVAAGESLSIDVESHHDPVPVPDAEVAFTTVFEDPDVIVVDKPAGLVVHPGAGHDRATLVNGLLARYPEIAGVGDLYRPGIVHRLDRGTSGLLVVARTERAHRSLVEQMRSHEPERLYSALVWGHPEASAGVVDAPVGRSSRNPLRMTVTDRGRPARTHYEVEQRFSEPARVALLACRLETGRTHQIRVHLRAIGHAVVADPTYGAGHAAAGRGGGVFGLSRPFLHARSLSFGHPVTKETVRAESPLPAELAEVLASC 311          
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A6B1E740_9ACTN (Pseudouridine synthase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1E740_9ACTN)

HSP 1 Score: 306 bits (783), Expect = 4.390e-101
Identity = 158/267 (59.18%), Postives = 194/267 (72.66%), Query Frame = 1
Query:    1 RLDGRPARTASTRVNEDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPG----RPFLHAGTLRFVHPVTGAPVAVESPLPDDLVECVAAC 789
            RLDG    + + RV   ++L V +    DPRP  DP V F   +ED  VVV+DKPAG+VVHPGAGH   TLV+GL+ARYP++ADVG+ +RPGIVHRLDRGTSGL+VVART  AY  +V Q+ S +P+R+Y+ALV G  E+ SG+IDAPIGRS R+P RM V+++GR A T Y+V++R+  P    L++CRLETGRTHQIRVHLRAIGHPVVGD  Y  GR  LD      RPFLHAG+L F HPV+G  V  ESPLP DL   +AAC
Sbjct:   42 RLDGAVVTSGTRRVAAGESLSVAVDRRDDPRPAADPDVAFQTVFEDAHVVVVDKPAGLVVHPGAGHDRGTLVNGLLARYPDIADVGDAYRPGIVHRLDRGTSGLMVVARTELAYHLLVEQLRSRQPQRVYSALVRGQPEAASGVIDAPIGRSSRNPQRMTVTDRGRSARTGYTVERRYCVPASAALLSCRLETGRTHQIRVHLRAIGHPVVGDPTYGSGR--LDDAFGLSRPFLHAGSLSFTHPVSGETVQAESPLPPDLAAVLAAC 306          
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A6I2YAI3_9ACTN (Pseudouridine synthase n=2 Tax=root TaxID=1 RepID=A0A6I2YAI3_9ACTN)

HSP 1 Score: 300 bits (768), Expect = 7.010e-99
Identity = 153/260 (58.85%), Postives = 192/260 (73.85%), Query Frame = 1
Query:    1 RLDGRPARTASTRVN---EDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPGRPFLHAGTLRFVHPVTGAPVAVESPLPDDLV 771
            R+DG   +  S R+    + +T EV+L  P+   P  DPSV F V + D+ V+VIDKPAG+VVHPGAG+ +ATLV+GL+AR+PE++ VGE  RPGIVHRLD+GTSGLLV+ARTP AY ++V Q+++HE  R Y AL WG  E+ +G++DAPIGRS R PT+MAVS+ GR A T Y VD+ F+ P   +L+TC LETGRTHQIRVHL AIGHP+VGD  Y G RPGL   RP+LHA TLRF HP TG  ++ E PLP DLV
Sbjct:   39 RIDGEVVQQRSRRMRLGEQIETPEVDLSPPI---PVADPSVEFTVVHADEHVIVIDKPAGLVVHPGAGNPDATLVNGLLARFPEISSVGEPQRPGIVHRLDKGTSGLLVIARTPLAYDDLVGQLAAHEAHRGYRALAWGEFETPNGVVDAPIGRSDRDPTKMAVSQNGREARTRYRVDRTFTDPVVVSLLTCELETGRTHQIRVHLAAIGHPIVGDNRYRGTRPGLHVDRPWLHAATLRFEHPETGDEMSFELPLPADLV 295          
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A538HGL4_9ACTN (Pseudouridine synthase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538HGL4_9ACTN)

HSP 1 Score: 301 bits (770), Expect = 9.630e-99
Identity = 152/261 (58.24%), Postives = 187/261 (71.65%), Query Frame = 1
Query:    4 LDGRPARTASTRVNEDQTLEVELPEPVDPRP-EPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPGRPFLHAGTLRFVHPVTGAPVAVESPLPDDLVECVA 783
            + GRP  T S RV   + ++V+LP   +P P EPD  V  AV + D+ V+V DKPAG+V HPGAG+   TLV GL+AR+P++A VG+  RPGIVHRLD+GTSGLLVVART AAY  + RQ++S    R Y AL WGH+++ +G+IDAP+GR+ RH TRMAVS +GR A T Y V  RFS+P + TLV+CRLETGRTHQIRVHL A+GHPVVGD  Y G R  L PGRPFLHA  L F HP TG  +  ES LP +L E +A
Sbjct:   70 IGGRPVTTRSRRVTTGEVIDVDLPALAEPEPCEPDAEVDIAVVFADEHVIVCDKPAGLVTHPGAGNRRGTLVQGLLARFPDLAAVGDPARPGIVHRLDKGTSGLLVVARTRAAYASLTRQLASRTAVREYLALAWGHLDASAGVIDAPVGRAERHRTRMAVSARGRVARTRYEVRTRFSSPVEVTLVSCRLETGRTHQIRVHLAAVGHPVVGDTRYGGARRSLAPGRPFLHAERLSFDHPATGERLVFESALPAELAEVLA 330          
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A6N7FN83_9ACTN (Pseudouridine synthase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FN83_9ACTN)

HSP 1 Score: 300 bits (767), Expect = 1.530e-98
Identity = 157/265 (59.25%), Postives = 188/265 (70.94%), Query Frame = 1
Query:    1 RLDGRPARTASTRVNEDQTLEVELPEPVDPR-PEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPGRPFLHAGTLRFVHPVTGAPVAVESPLPDDLVECVAACE 792
            RL GR   T S RV E Q +EV       P  P  DPSVP  V Y DDDV+V+DKPAG+VVHPGAGHA+ TLV+GL+ARYP++A +G+  RPGIVHRLDRGTSGLLVVAR+  AY  +V  +++HE ER Y AL WG  E+ SG++DAP+GRS   PTRMAV   G+ A T Y V++ F  P   TL+ C LETGRTHQ+RVHL+AIGHPVVGD+ Y G R GL   RP+LHA  L F HPVTGAP++ ESPLP DL   + A E
Sbjct:   40 RLGGRVVATRSARVREGQVVEVLWSGDDAPGGPAADPSVPLQVVYGDDDVIVLDKPAGLVVHPGAGHADGTLVNGLLARYPDLAAIGQPGRPGIVHRLDRGTSGLLVVARSSLAYEGLVGALAAHEVERSYQALAWGAFEAASGLVDAPVGRSASEPTRMAVRHDGKPARTAYRVERHFDQPVSVTLLGCSLETGRTHQVRVHLQAIGHPVVGDQRYGGRRSGLVLDRPWLHARRLAFEHPVTGAPLSFESPLPADLATVLEALE 304          
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A7K2A4L6_9ACTN (Pseudouridine synthase n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2A4L6_9ACTN)

HSP 1 Score: 299 bits (766), Expect = 1.660e-98
Identity = 152/260 (58.46%), Postives = 190/260 (73.08%), Query Frame = 1
Query:    1 RLDGRPARTASTRVNEDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPG--RPFLHAGTLRFVHPVTGAPVAVESPLPDDLVE 774
            RLDG    + + RV   + L V++    DP P+PD  V FA  +ED  V+V+DKPAG+VVHPGAGH   TLV+GL+ARYPE+A+VG+ +RPGIVHRLDRGTSGLLVVART  A+  +V QM  H+PER+Y+ALV GH E+ +G++DAP+GRS R+P RM V+++GR A THY V++R+  P    L+TCRLETGRTHQIRVHL+AIGH VVGD  Y  GR  +  G  RPFLHA +L F HPV G  V  ESPLP +L E
Sbjct:   42 RLDGAVITSGARRVAAGEALAVDIQFRDDPAPQPDVEVDFAPVFEDPHVIVVDKPAGLVVHPGAGHDRGTLVNGLLARYPEIAEVGDPYRPGIVHRLDRGTSGLLVVARTDRAHRSLVEQMRCHDPERLYSALVRGHPEASAGVVDAPVGRSSRNPMRMTVTDRGRPARTHYEVERRYVEPAQVCLLTCRLETGRTHQIRVHLQAIGHHVVGDPTYGAGRGSVTLGLSRPFLHARSLSFSHPVGGHTVRAESPLPPELAE 301          
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A5Q2RR88_9ACTN (Pseudouridine synthase n=2 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RR88_9ACTN)

HSP 1 Score: 297 bits (761), Expect = 4.450e-98
Identity = 154/256 (60.16%), Postives = 179/256 (69.92%), Query Frame = 1
Query:    4 LDGRPARTASTRVNEDQTLEVELPE-PVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPGRPFLHAGTLRFVHPVTGAPVAVESPLPDDL 768
            +DG      S +V E Q + + LP+ P  P   PD S+   V +EDDDVVVIDKPAG+VVHPGAG+ + TLV+ LVARYPE+ DVGE  RPGIVHR+D+GTSGLL VARTP AY  +V  +S+H+ ER Y ALVWG  E+  G++DA IGRS R PTRMAVS +GR A THY V + F  P    LV CRLETGRTHQIRVH+ AIGHPVVGD  Y G R  +   RPFLHA  L F HPVTG PV   SPLP DL
Sbjct:   21 VDGHEVTKGSIKVREGQRVRIVLPDVPEGPLVAPDASIDLRVVHEDDDVVVIDKPAGLVVHPGAGNLDGTLVNALVARYPEIVDVGEPERPGIVHRIDKGTSGLLAVARTPRAYDALVAALSAHDVEREYLALVWGRPEATHGVVDAAIGRSGRDPTRMAVSNRGRHARTHYEVVRTFDNPVPLALVRCRLETGRTHQIRVHMAAIGHPVVGDDRYGGARSPVPVDRPFLHAARLSFAHPVTGEPVEATSPLPADL 276          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0HLK4_9ACTN3.020e-12267.45Pseudouridine synthase (Fragment) n=5 Tax=Acidimic... [more]
A0A7K1Z9K7_9ACTN5.100e-11765.27Pseudouridine synthase n=2 Tax=Acidimicrobiaceae b... [more]
A0A3M2GPM5_ACTSX1.530e-10760.46Pseudouridine synthase n=1 Tax=Actinomyces sp. Tax... [more]
A0A6N8YB26_9ACTN2.750e-10358.52Pseudouridine synthase n=2 Tax=Acidimicrobiaceae b... [more]
A0A6B1E740_9ACTN4.390e-10159.18Pseudouridine synthase n=2 Tax=Acidimicrobiaceae b... [more]
A0A6I2YAI3_9ACTN7.010e-9958.85Pseudouridine synthase n=2 Tax=root TaxID=1 RepID=... [more]
A0A538HGL4_9ACTN9.630e-9958.24Pseudouridine synthase n=1 Tax=Actinomycetia bacte... [more]
A0A6N7FN83_9ACTN1.530e-9859.25Pseudouridine synthase n=1 Tax=Acidimicrobiia bact... [more]
A0A7K2A4L6_9ACTN1.660e-9858.46Pseudouridine synthase n=6 Tax=Acidimicrobiaceae b... [more]
A0A5Q2RR88_9ACTN4.450e-9860.16Pseudouridine synthase n=2 Tax=Actinomarinicola tr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89130contigM-pyrifera_M_contig89130:3..797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score255.8
Seed ortholog evalue2.3e-65
Seed eggNOG ortholog1313172.YM304_19580
Preferred namerluD
KEGG koko:K06177,ko:K06180
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022607,GO:0022613,GO:0022618,GO:0031118,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360
EggNOG free text desc.Responsible for synthesis of pseudouridine from uracil
EggNOG OGs2GIY1@201174,4CN1X@84992,COG0564@1,COG0564@2
EC5.4.99.23,5.4.99.28,5.4.99.29
COG Functional cat.J
BiGG ReactioniE2348C_1286.E2348C_2868,iECED1_1282.ECED1_3035,iECSF_1327.ECSF_2432
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03016
Exons1
Model size795
Cds size795
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816801.651551-CDS-M-pyrifera_M_contig89130:2..7971622816801.651551-CDS-M-pyrifera_M_contig89130:2..797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89130 3..797 +
1692278186.9456344-CDS-M-pyrifera_M_contig89130:2..7971692278186.9456344-CDS-M-pyrifera_M_contig89130:2..797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89130 3..797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89130.20665.1prot_M-pyrifera_M_contig89130.20665.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89130 3..797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89130.20665.1

>prot_M-pyrifera_M_contig89130.20665.1 ID=prot_M-pyrifera_M_contig89130.20665.1|Name=mRNA_M-pyrifera_M_contig89130.20665.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=265bp
RLDGRPARTASTRVNEDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVV
VIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRG
TSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIG
RSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIR
VHLRAIGHPVVGDRDYDGGRPGLDPGRPFLHAGTLRFVHPVTGAPVAVES
PLPDDLVECVAACE*
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mRNA from alignment at M-pyrifera_M_contig89130:3..797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89130.20665.1 ID=mRNA_M-pyrifera_M_contig89130.20665.1|Name=mRNA_M-pyrifera_M_contig89130.20665.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=795bp|location=Sequence derived from alignment at M-pyrifera_M_contig89130:3..797+ (Macrocystis pyrifera P11B4 male)
CGCCTCGACGGCAGACCGGCGCGCACCGCATCGACCCGGGTCAATGAGGA CCAGACCCTCGAGGTGGAGTTGCCCGAGCCGGTCGATCCTCGGCCGGAGC CCGACCCGAGCGTGCCGTTCGCGGTGCGCTACGAGGACGACGATGTCGTC GTGATCGACAAGCCGGCCGGTGTCGTGGTGCACCCGGGCGCCGGTCATGC CGAGGCAACGCTCGTGCACGGCCTGGTGGCCCGCTACCCGGAGATGGCCG ACGTCGGCGAAGAGCATCGGCCCGGCATCGTGCATCGGCTCGATCGCGGC ACCTCAGGCCTGCTCGTGGTGGCCCGAACCCCCGCCGCCTACACGGAGAT GGTGCGACAGATGTCGTCGCACGAGCCCGAACGCATCTACACCGCACTCG TCTGGGGACACATCGAGAGCGACAGCGGCATCATCGATGCACCGATCGGG CGATCGCCTCGCCATCCGACCCGGATGGCGGTCAGTGAGCAAGGGCGACG CGCCGTCACCCACTACAGCGTCGACCAGCGGTTCTCCGCGCCGCGTGACA CCACGCTGGTGACCTGCCGGCTGGAGACCGGGCGCACCCATCAGATCCGG GTCCACCTGCGTGCCATCGGCCACCCGGTCGTCGGCGATCGCGACTATGA CGGCGGTCGGCCCGGACTCGACCCCGGGCGACCCTTTCTCCATGCGGGCA CGCTGCGCTTCGTCCATCCGGTCACGGGAGCACCGGTTGCCGTGGAGTCG CCGTTGCCCGATGATCTCGTCGAGTGTGTGGCCGCCTGCGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89130:3..797+

>mRNA_M-pyrifera_M_contig89130.20665.1 ID=mRNA_M-pyrifera_M_contig89130.20665.1|Name=mRNA_M-pyrifera_M_contig89130.20665.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1590bp|location=Sequence derived from alignment at M-pyrifera_M_contig89130:3..797+ (Macrocystis pyrifera P11B4 male)
CGCCTCGACGGCAGACCGGCGCGCACCGCATCGACCCGGGTCAATGAGGA
CCAGACCCTCGAGGTGGAGTTGCCCGAGCCGGTCGATCCTCGGCCGGAGC
CCGACCCGAGCGTGCCGTTCGCGGTGCGCTACGAGGACGACGATGTCGTC
GTGATCGACAAGCCGGCCGGTGTCGTGGTGCACCCGGGCGCCGGTCATGC
CGAGGCAACGCTCGTGCACGGCCTGGTGGCCCGCTACCCGGAGATGGCCG
ACGTCGGCGAAGAGCATCGGCCCGGCATCGTGCATCGGCTCGATCGCGGC
ACCTCAGGCCTGCTCGTGGTGGCCCGAACCCCCGCCGCCTACACGGAGAT
GGTGCGACAGATGTCGTCGCACGAGCCCGAACGCATCTACACCGCACTCG
TCTGGGGACACATCGAGAGCGACAGCGGCATCATCGATGCACCGATCGGG
CGATCGCCTCGCCATCCGACCCGGATGGCGGTCAGTGAGCAAGGGCGACG
CGCCGTCACCCACTACAGCGTCGACCAGCGGTTCTCCGCGCCGCGTGACA
CCACGCTGGTGACCTGCCGGCTGGAGACCGGGCGCACCCATCAGATCCGG
GTCCACCTGCGTGCCATCGGCCACCCGGTCGTCGGCGATCGCGACTATGA
CGGCGGTCGGCCCGGACTCGACCCCGGGCGACCCTTTCTCCATGCGGGCA
CGCTGCGCTTCGTCCATCCGGTCACGGGAGCACCGGTTGCCGTGGAGTCG
CCGTTGCCCGATGATCTCGTCGAGTGTGTGGCCGCCTGCGAGTGACGCCT
CGACGGCAGACCGGCGCGCACCGCATCGACCCGGGTCAATGAGGACCAGA
CCCTCGAGGTGGAGTTGCCCGAGCCGGTCGATCCTCGGCCGGAGCCCGAC
CCGAGCGTGCCGTTCGCGGTGCGCTACGAGGACGACGATGTCGTCGTGAT
CGACAAGCCGGCCGGTGTCGTGGTGCACCCGGGCGCCGGTCATGCCGAGG
CAACGCTCGTGCACGGCCTGGTGGCCCGCTACCCGGAGATGGCCGACGTC
GGCGAAGAGCATCGGCCCGGCATCGTGCATCGGCTCGATCGCGGCACCTC
AGGCCTGCTCGTGGTGGCCCGAACCCCCGCCGCCTACACGGAGATGGTGC
GACAGATGTCGTCGCACGAGCCCGAACGCATCTACACCGCACTCGTCTGG
GGACACATCGAGAGCGACAGCGGCATCATCGATGCACCGATCGGGCGATC
GCCTCGCCATCCGACCCGGATGGCGGTCAGTGAGCAAGGGCGACGCGCCG
TCACCCACTACAGCGTCGACCAGCGGTTCTCCGCGCCGCGTGACACCACG
CTGGTGACCTGCCGGCTGGAGACCGGGCGCACCCATCAGATCCGGGTCCA
CCTGCGTGCCATCGGCCACCCGGTCGTCGGCGATCGCGACTATGACGGCG
GTCGGCCCGGACTCGACCCCGGGCGACCCTTTCTCCATGCGGGCACGCTG
CGCTTCGTCCATCCGGTCACGGGAGCACCGGTTGCCGTGGAGTCGCCGTT
GCCCGATGATCTCGTCGAGTGTGTGGCCGCCTGCGAGTGA
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