mRNA_M-pyrifera_M_contig89130.20665.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A3C0HLK4_9ACTN (Pseudouridine synthase (Fragment) n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C0HLK4_9ACTN) HSP 1 Score: 358 bits (918), Expect = 3.020e-122 Identity = 172/255 (67.45%), Postives = 202/255 (79.22%), Query Frame = 1 Query: 4 LDGRPARTASTRVNEDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPGRPFLHAGTLRFVHPVTGAPVAVESPLPDDL 768 +DGRP TAS +V+ + +ELP P DP P P V F V +EDDDV+V+DKPAG+VVHPGAG A+ TLV+GLVARYPE+ +GE HRPGIVHRLDRGTSGLLVVAR+ AY +V QMS+HEPER+Y AL WGH ++D+G IDAPIGRS RHPTRM V+E GR A+THY V++RF P +LV CRL+TGRTHQIRVHLRAI HPVVGDRDYDGGRPGLDPGRPFLHA L F HPV+ ++ E+ LPDDL Sbjct: 1 VDGRPITTASRKVDAGMVVTIELPPPDDPTPAPQVDVEFTVVHEDDDVIVVDKPAGLVVHPGAGQADGTLVNGLVARYPELLRIGEVHRPGIVHRLDRGTSGLLVVARSEEAYVGLVGQMSAHEPERVYLALAWGHFDTDAGTIDAPIGRSARHPTRMTVTENGRHAITHYRVERRFEMPVACSLVQCRLDTGRTHQIRVHLRAINHPVVGDRDYDGGRPGLDPGRPFLHAAHLLFRHPVSHETLSFEAALPDDL 255
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A7K1Z9K7_9ACTN (Pseudouridine synthase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z9K7_9ACTN) HSP 1 Score: 347 bits (890), Expect = 5.100e-117 Identity = 171/262 (65.27%), Postives = 204/262 (77.86%), Query Frame = 1 Query: 4 LDGRPARTASTRVNEDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPGRPFLHAGTLRFVHPVTGAPVAVESPLPDDLVECVAAC 789 +DG A + S RV T+E +P P DPRP DP+V F V YED ++V+DKPA +VVHPGAGH ++TLV+GL++RYPE+A VGE RPGIVHRLDR TSGLLVVART AY ++V QMS+HEPER+Y AL WGH+E+D G IDAPIGRSPRHPTRMAV ++GR A THY V +RF+ PR+T+L+ CRLETGRTHQIRVHL+AIGHPVVGDR YDG RPG++ RPFLHA LRF HPVT V +ESPL DLV + C Sbjct: 65 IDGVVATSGSARVETGSTIEALVPVPTDPRPTADPAVEFRVVYEDPHILVVDKPADLVVHPGAGHKDSTLVNGLLSRYPEIASVGEPQRPGIVHRLDRTTSGLLVVARTSEAYGQLVVQMSAHEPERVYQALAWGHLEADRGTIDAPIGRSPRHPTRMAVIDRGRPARTHYEVVERFAEPRETSLLECRLETGRTHQIRVHLKAIGHPVVGDRAYDGHRPGIELDRPFLHACALRFRHPVTDERVELESPLAADLVGTLQLC 326
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A3M2GPM5_ACTSX (Pseudouridine synthase n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GPM5_ACTSX) HSP 1 Score: 323 bits (827), Expect = 1.530e-107 Identity = 159/263 (60.46%), Postives = 189/263 (71.86%), Query Frame = 1 Query: 1 RLDGRPARTASTRVNEDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPGRPFLHAGTLRFVHPVTGAPVAVESPLPDDLVECVAAC 789 R+ GR ++R++ L VELP PVD RP PDPSV + + DDD++++DKPAG+VVHPG GH TLVHGL+AR+PE+ADVGE HRPGIVHRLDRGTSGLL VART A+ + + RIY AL WG E+++G ++AP+GRS RHPTRM V+ +GR AVTHY V R PR L+ CRLETGRTHQIRVHL AIGHPVVGDRDY G RPGLDPGRPFLHA LR HP TG + SPLP +LV A+C Sbjct: 46 RVAGRVVTAPASRLSAGDELAVELPPPVDARPTPDPSVVVDLVHVDDDLIIVDKPAGLVVHPGHGHTGGTLVHGLLARFPELADVGEPHRPGIVHRLDRGTSGLLAVARTAEAHRRLTDAFAQRRAGRIYLALAWGAPETEAGTVEAPVGRSNRHPTRMTVTTRGRDAVTHYRVLARSDRPRPVALLRCRLETGRTHQIRVHLAAIGHPVVGDRDYGGARPGLDPGRPFLHAAVLRVPHPRTGETIEAVSPLPAELVAVAASC 308
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A6N8YB26_9ACTN (Pseudouridine synthase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N8YB26_9ACTN) HSP 1 Score: 311 bits (798), Expect = 2.750e-103 Identity = 158/270 (58.52%), Postives = 193/270 (71.48%), Query Frame = 1 Query: 1 RLDGRPARTASTRVNEDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPG-------RPFLHAGTLRFVHPVTGAPVAVESPLPDDLVECVAAC 789 RLDG + + RV ++L +++ DP P PD V F +ED DV+V+DKPAG+VVHPGAGH ATLV+GL+ARYPE+A VG+ +RPGIVHRLDRGTSGLLVVART A+ +V QM SHEPER+Y+ALVWGH E+ +G++DAP+GRS R+P RM V+++GR A THY V+QRFS P L+ CRLETGRTHQIRVHLRAIGH VV D Y G G RPFLHA +L F HPVT V ESPLP +L E +A+C Sbjct: 42 RLDGTVITSGARRVAAGESLSIDVESHHDPVPVPDAEVAFTTVFEDPDVIVVDKPAGLVVHPGAGHDRATLVNGLLARYPEIAGVGDLYRPGIVHRLDRGTSGLLVVARTERAHRSLVEQMRSHEPERLYSALVWGHPEASAGVVDAPVGRSSRNPLRMTVTDRGRPARTHYEVEQRFSEPARVALLACRLETGRTHQIRVHLRAIGHAVVADPTYGAGHAAAGRGGGVFGLSRPFLHARSLSFGHPVTKETVRAESPLPAELAEVLASC 311
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A6B1E740_9ACTN (Pseudouridine synthase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1E740_9ACTN) HSP 1 Score: 306 bits (783), Expect = 4.390e-101 Identity = 158/267 (59.18%), Postives = 194/267 (72.66%), Query Frame = 1 Query: 1 RLDGRPARTASTRVNEDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPG----RPFLHAGTLRFVHPVTGAPVAVESPLPDDLVECVAAC 789 RLDG + + RV ++L V + DPRP DP V F +ED VVV+DKPAG+VVHPGAGH TLV+GL+ARYP++ADVG+ +RPGIVHRLDRGTSGL+VVART AY +V Q+ S +P+R+Y+ALV G E+ SG+IDAPIGRS R+P RM V+++GR A T Y+V++R+ P L++CRLETGRTHQIRVHLRAIGHPVVGD Y GR LD RPFLHAG+L F HPV+G V ESPLP DL +AAC Sbjct: 42 RLDGAVVTSGTRRVAAGESLSVAVDRRDDPRPAADPDVAFQTVFEDAHVVVVDKPAGLVVHPGAGHDRGTLVNGLLARYPDIADVGDAYRPGIVHRLDRGTSGLMVVARTELAYHLLVEQLRSRQPQRVYSALVRGQPEAASGVIDAPIGRSSRNPQRMTVTDRGRSARTGYTVERRYCVPASAALLSCRLETGRTHQIRVHLRAIGHPVVGDPTYGSGR--LDDAFGLSRPFLHAGSLSFTHPVSGETVQAESPLPPDLAAVLAAC 306
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A6I2YAI3_9ACTN (Pseudouridine synthase n=2 Tax=root TaxID=1 RepID=A0A6I2YAI3_9ACTN) HSP 1 Score: 300 bits (768), Expect = 7.010e-99 Identity = 153/260 (58.85%), Postives = 192/260 (73.85%), Query Frame = 1 Query: 1 RLDGRPARTASTRVN---EDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPGRPFLHAGTLRFVHPVTGAPVAVESPLPDDLV 771 R+DG + S R+ + +T EV+L P+ P DPSV F V + D+ V+VIDKPAG+VVHPGAG+ +ATLV+GL+AR+PE++ VGE RPGIVHRLD+GTSGLLV+ARTP AY ++V Q+++HE R Y AL WG E+ +G++DAPIGRS R PT+MAVS+ GR A T Y VD+ F+ P +L+TC LETGRTHQIRVHL AIGHP+VGD Y G RPGL RP+LHA TLRF HP TG ++ E PLP DLV Sbjct: 39 RIDGEVVQQRSRRMRLGEQIETPEVDLSPPI---PVADPSVEFTVVHADEHVIVIDKPAGLVVHPGAGNPDATLVNGLLARFPEISSVGEPQRPGIVHRLDKGTSGLLVIARTPLAYDDLVGQLAAHEAHRGYRALAWGEFETPNGVVDAPIGRSDRDPTKMAVSQNGREARTRYRVDRTFTDPVVVSLLTCELETGRTHQIRVHLAAIGHPIVGDNRYRGTRPGLHVDRPWLHAATLRFEHPETGDEMSFELPLPADLV 295
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A538HGL4_9ACTN (Pseudouridine synthase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538HGL4_9ACTN) HSP 1 Score: 301 bits (770), Expect = 9.630e-99 Identity = 152/261 (58.24%), Postives = 187/261 (71.65%), Query Frame = 1 Query: 4 LDGRPARTASTRVNEDQTLEVELPEPVDPRP-EPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPGRPFLHAGTLRFVHPVTGAPVAVESPLPDDLVECVA 783 + GRP T S RV + ++V+LP +P P EPD V AV + D+ V+V DKPAG+V HPGAG+ TLV GL+AR+P++A VG+ RPGIVHRLD+GTSGLLVVART AAY + RQ++S R Y AL WGH+++ +G+IDAP+GR+ RH TRMAVS +GR A T Y V RFS+P + TLV+CRLETGRTHQIRVHL A+GHPVVGD Y G R L PGRPFLHA L F HP TG + ES LP +L E +A Sbjct: 70 IGGRPVTTRSRRVTTGEVIDVDLPALAEPEPCEPDAEVDIAVVFADEHVIVCDKPAGLVTHPGAGNRRGTLVQGLLARFPDLAAVGDPARPGIVHRLDKGTSGLLVVARTRAAYASLTRQLASRTAVREYLALAWGHLDASAGVIDAPVGRAERHRTRMAVSARGRVARTRYEVRTRFSSPVEVTLVSCRLETGRTHQIRVHLAAVGHPVVGDTRYGGARRSLAPGRPFLHAERLSFDHPATGERLVFESALPAELAEVLA 330
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A6N7FN83_9ACTN (Pseudouridine synthase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FN83_9ACTN) HSP 1 Score: 300 bits (767), Expect = 1.530e-98 Identity = 157/265 (59.25%), Postives = 188/265 (70.94%), Query Frame = 1 Query: 1 RLDGRPARTASTRVNEDQTLEVELPEPVDPR-PEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPGRPFLHAGTLRFVHPVTGAPVAVESPLPDDLVECVAACE 792 RL GR T S RV E Q +EV P P DPSVP V Y DDDV+V+DKPAG+VVHPGAGHA+ TLV+GL+ARYP++A +G+ RPGIVHRLDRGTSGLLVVAR+ AY +V +++HE ER Y AL WG E+ SG++DAP+GRS PTRMAV G+ A T Y V++ F P TL+ C LETGRTHQ+RVHL+AIGHPVVGD+ Y G R GL RP+LHA L F HPVTGAP++ ESPLP DL + A E Sbjct: 40 RLGGRVVATRSARVREGQVVEVLWSGDDAPGGPAADPSVPLQVVYGDDDVIVLDKPAGLVVHPGAGHADGTLVNGLLARYPDLAAIGQPGRPGIVHRLDRGTSGLLVVARSSLAYEGLVGALAAHEVERSYQALAWGAFEAASGLVDAPVGRSASEPTRMAVRHDGKPARTAYRVERHFDQPVSVTLLGCSLETGRTHQVRVHLQAIGHPVVGDQRYGGRRSGLVLDRPWLHARRLAFEHPVTGAPLSFESPLPADLATVLEALE 304
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A7K2A4L6_9ACTN (Pseudouridine synthase n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2A4L6_9ACTN) HSP 1 Score: 299 bits (766), Expect = 1.660e-98 Identity = 152/260 (58.46%), Postives = 190/260 (73.08%), Query Frame = 1 Query: 1 RLDGRPARTASTRVNEDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPG--RPFLHAGTLRFVHPVTGAPVAVESPLPDDLVE 774 RLDG + + RV + L V++ DP P+PD V FA +ED V+V+DKPAG+VVHPGAGH TLV+GL+ARYPE+A+VG+ +RPGIVHRLDRGTSGLLVVART A+ +V QM H+PER+Y+ALV GH E+ +G++DAP+GRS R+P RM V+++GR A THY V++R+ P L+TCRLETGRTHQIRVHL+AIGH VVGD Y GR + G RPFLHA +L F HPV G V ESPLP +L E Sbjct: 42 RLDGAVITSGARRVAAGEALAVDIQFRDDPAPQPDVEVDFAPVFEDPHVIVVDKPAGLVVHPGAGHDRGTLVNGLLARYPEIAEVGDPYRPGIVHRLDRGTSGLLVVARTDRAHRSLVEQMRCHDPERLYSALVRGHPEASAGVVDAPVGRSSRNPMRMTVTDRGRPARTHYEVERRYVEPAQVCLLTCRLETGRTHQIRVHLQAIGHHVVGDPTYGAGRGSVTLGLSRPFLHARSLSFSHPVGGHTVRAESPLPPELAE 301
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Match: A0A5Q2RR88_9ACTN (Pseudouridine synthase n=2 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RR88_9ACTN) HSP 1 Score: 297 bits (761), Expect = 4.450e-98 Identity = 154/256 (60.16%), Postives = 179/256 (69.92%), Query Frame = 1 Query: 4 LDGRPARTASTRVNEDQTLEVELPE-PVDPRPEPDPSVPFAVRYEDDDVVVIDKPAGVVVHPGAGHAEATLVHGLVARYPEMADVGEEHRPGIVHRLDRGTSGLLVVARTPAAYTEMVRQMSSHEPERIYTALVWGHIESDSGIIDAPIGRSPRHPTRMAVSEQGRRAVTHYSVDQRFSAPRDTTLVTCRLETGRTHQIRVHLRAIGHPVVGDRDYDGGRPGLDPGRPFLHAGTLRFVHPVTGAPVAVESPLPDDL 768 +DG S +V E Q + + LP+ P P PD S+ V +EDDDVVVIDKPAG+VVHPGAG+ + TLV+ LVARYPE+ DVGE RPGIVHR+D+GTSGLL VARTP AY +V +S+H+ ER Y ALVWG E+ G++DA IGRS R PTRMAVS +GR A THY V + F P LV CRLETGRTHQIRVH+ AIGHPVVGD Y G R + RPFLHA L F HPVTG PV SPLP DL Sbjct: 21 VDGHEVTKGSIKVREGQRVRIVLPDVPEGPLVAPDASIDLRVVHEDDDVVVIDKPAGLVVHPGAGNLDGTLVNALVARYPEIVDVGEPERPGIVHRIDKGTSGLLAVARTPRAYDALVAALSAHDVEREYLALVWGRPEATHGVVDAAIGRSGRDPTRMAVSNRGRHARTHYEVVRTFDNPVPLALVRCRLETGRTHQIRVHMAAIGHPVVGDDRYGGARSPVPVDRPFLHAARLSFAHPVTGEPVEATSPLPADL 276 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89130.20665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig89130.20665.1 >prot_M-pyrifera_M_contig89130.20665.1 ID=prot_M-pyrifera_M_contig89130.20665.1|Name=mRNA_M-pyrifera_M_contig89130.20665.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=265bp RLDGRPARTASTRVNEDQTLEVELPEPVDPRPEPDPSVPFAVRYEDDDVVback to top mRNA from alignment at M-pyrifera_M_contig89130:3..797+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig89130.20665.1 ID=mRNA_M-pyrifera_M_contig89130.20665.1|Name=mRNA_M-pyrifera_M_contig89130.20665.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=795bp|location=Sequence derived from alignment at M-pyrifera_M_contig89130:3..797+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig89130:3..797+ >mRNA_M-pyrifera_M_contig89130.20665.1 ID=mRNA_M-pyrifera_M_contig89130.20665.1|Name=mRNA_M-pyrifera_M_contig89130.20665.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1590bp|location=Sequence derived from alignment at M-pyrifera_M_contig89130:3..797+ (Macrocystis pyrifera P11B4 male)back to top |