mRNA_M-pyrifera_M_contig89113.20660.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89113.20660.1
Unique NamemRNA_M-pyrifera_M_contig89113.20660.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89113.20660.1 vs. uniprot
Match: A0A3C0Q9Q1_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3C0Q9Q1_9GAMM)

HSP 1 Score: 259 bits (661), Expect = 2.310e-75
Identity = 137/264 (51.89%), Postives = 173/264 (65.53%), Query Frame = 1
Query:    4 VEFDFRKLFYSDYLAFNDIKGSAELTRTALVLNAFGARFHDSPITLDGGLTFTAGETAPYTAKLRGKIADFDLNQFFTELTPNEESRIEGLFSVDIAIDGTSPNAAQFRNRLLLDLKMNSRDGLFRPLPAGGTLMAGASDALGIVGEGLSYVPTGGFGAGAVSRLVNYIAVIDYDVIDIHITRDTSLDLVIKRFNMLSPNIRMSAKGAIAHEYGKDIIDSPLDVVAHLNMTGKGAAILYSIDLLEDEQDKYGYWKGPEFRISGS 795
            V FD  +LFY+DYL    IKG  E T   L+L+ F A FHDSPIT DG + F  GE  PY  KL   I  FD+ +FF EL P    R EGLF++ +   G SPN  Q+RN+L  D+++ SRDG+FRP      L+AG+S   G  GE +SYVPTG FG GAVSRLV YI  I+YD IDIH+ RD S D+ I+++ + SP I M AKG I ++ G DI+ SPL +   L+M  +GAAILYS++LL+DEQD YGYWKGPE    G+
Sbjct: 1039 VTFDLERLFYTDYLEITGIKGRTEDTAGKLLLSDFEAHFHDSPITADGVINFVPGEV-PYDLKLEAAIEQFDVARFFRELAPEHTPRAEGLFNIKLDAFGQSPNMPQYRNKLFFDMRLQSRDGVFRPFNPDSALVAGSSGFAGGFGEVVSYVPTGLFGLGAVSRLVYYIKEIEYDKIDIHMVRDESRDVQIRKYVIQSPEILMLAKGGIEYQEGIDILHSPLSLKVQLDMRDRGAAILYSLNLLQDEQDPYGYWKGPEINAWGT 1301          
BLAST of mRNA_M-pyrifera_M_contig89113.20660.1 vs. uniprot
Match: A0A2G4HIF5_9BACT (Uncharacterized protein n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2G4HIF5_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 1.790e-19
Identity = 80/285 (28.07%), Postives = 130/285 (45.61%), Query Frame = 1
Query:    1 EVEFDFRKLFYSDYLAFNDIKGSAELTRTALVLNAFGARFHD-SPITLDGGLTFTAGETAPYTAKLRGKIADFDLNQFFTELTPNEESRIEGLFSVDIAIDGTSPNAAQFRNRLLLDLKMNSRDGLFRPLPA------------GGTL-----MAGASDALGIVGEGLSYVPTGGFGAGAVSRLVNYIAVIDYDVIDIHITRDTSLDLVIKRFNMLSPNIRMSAKGAIAHEYGKDIIDSPLDVVAHLNMTGKGAAILYSIDLLEDEQ-DKYGYWKGP-EFRISGS 795
            ++    +K+ Y+      DI G+  +   A+ L    A   + S I L GGLTFT     PY   L   + +FD       L P +   +EG F+V   + G + N  +   R   D  + S+ G+FR L A              TL     +AGA      + +  S V        AV+ L   I+ I+YD +++  TRD +L+L +K F +++P +R++  G IA + G ++   PL +   L   G    +L S+  LE E+ D+ GY++     R++GS
Sbjct:  707 QLALSLKKVVYAQKFEVADIGGTIRIDAGAVKLVGVRAGLGEGSEIKLKGGLTFTPTAPEPYGVALDLDVTNFDPAPVLRALNPGQPPTVEGKFTVASKVTGNARNLGEIGQRAAGDFALTSKGGVFRALAADVSSKVATTTKTASTLATLGNLAGALTGRKDISDAASKVE-------AVASLSKMISAIEYDQLNVVFTRDAALNLTLKDFTLIAPELRLAGTGRIAAKVGLELAAQPLVMEFKLGARGTMGKLLKSLAALETEKPDELGYFRSNLPLRVTGS 984          
BLAST of mRNA_M-pyrifera_M_contig89113.20660.1 vs. uniprot
Match: A0A3E1EFK0_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A3E1EFK0_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 5.640e-17
Identity = 70/251 (27.89%), Postives = 115/251 (45.82%), Query Frame = 1
Query:   19 RKLFYSDYLAFNDIKGSAELTRTALVLNAFGARFH-DSPITLDGGLTFTAGETAPYTAKLRGKIADFDLNQFFTELTPNEESRIEGLFSVDIAIDGTSPNAAQFRNRLLLDLKMNSRDGLFRPLPAGGTLMAGASDALGIVGEGLSYVPTGGF--GAGAVSRLVNYIAVIDYDVIDIHITRDTSLDLVIKRFNMLSPNIRMSAKGAIAHEYGKDIIDSPLDVVAHLNMTGKGAAILYSIDLLEDEQDKYGY 762
            +K+ ++D    +D+ G+  L  T L L    A F  DS + L GGLTF+ G  A Y       + +FDL+  F  L P     +EG  ++   ++G S + A+       DLK+  + GLFR      +     + +  +    L  V T  F      ++ +   +A I YD + +  TRD SL+L ++ F ++SP +R+   G I +  G  ++  PL     L   G+   ++    LLE + D  GY
Sbjct:  703 KKVIWNDQWQVSDLSGAIGLEPTVLQLADLRAVFGPDSIVKLSGGLTFSPGGPATYGFTADLALDNFDLSAVFRALDPTRPPTVEGRVNLLSHLEGKSASLAELAAVTRGDLKVTGKSGLFRAFAVDLSDRIQKNQSRVVAIGSLLGVVTDDFVNKTKILADIAKSLAEIPYDQLSLTATRDESLNLRVRNFTLISPEVRIGGSGNIRYAAGVPLLAQPLQAQLSLGTRGRLGDLMKRAGLLEPQLDNLGY 953          
BLAST of mRNA_M-pyrifera_M_contig89113.20660.1 vs. uniprot
Match: A0A3D2KNE9_9BACT (Uncharacterized protein n=2 Tax=Verrucomicrobia TaxID=74201 RepID=A0A3D2KNE9_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 1.220e-12
Identity = 66/274 (24.09%), Postives = 117/274 (42.70%), Query Frame = 1
Query:   13 DFRKLFYSDYLAFNDIKGSAELTRTALVLNAFGARFHDSPITLDGGLTFTAGETAPYTAKLRGKIADFDLN-----QFFTELTP---NEESRIEGLFSVDIAIDGTSPNAAQFRNRLLLDLKMNSRDGLFRPLPAGGTLMAGASDALGIVGE-----GLSYVPTGGFGAGAVSRLVNYIAVIDYDVIDIHITRDTSLDLVIKRFNMLSPNIRMSAKGAIAHEYGKDIIDSPLDVVAHLNMTGKGAAILYSIDLLEDEQDKYGYWKGPEFRISGS 795
            D  +L Y         K   ++    L L      F ++P  ++    F   +  PYT    G++   D+      + F   +P      + I  + S  I ++  S NA         + K+ ++ G   PL     + AG    +G++       G  + P GG G      +V+Y   I YD I + + RD   DLV+K   +  P + +   G + H+    ++D PL V A L+  G+GA +   + +LE  +++Y Y+ GP+F ++G+
Sbjct:  905 DIGRLIYKGMPVLTAFKAKLDVDADTLTLKPLQGTFLEAPFAVEASFGFKQSDL-PYT--FHGEMVWNDIRMDSVYKHFLASSPIFTGSVTCIANVSSSGIDLNDLSNNAHG-------NFKLTAKSGKITPLV---NMNAGQQIGIGLLSTAGSILGNVFKPLGGLG-----DVVSYFKEIPYDNIRLDLNRDPGSDLVLKNITLEGPELYLQGTGKVVHQPKVPLLDQPLHVDARLDAKGEGAKVFSGLGILESAKNRYDYYIGPKFTLTGT 1160          
BLAST of mRNA_M-pyrifera_M_contig89113.20660.1 vs. uniprot
Match: A0A257QFR4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobia bacterium 21-51-4 TaxID=1970609 RepID=A0A257QFR4_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 4.380e-10
Identity = 44/142 (30.99%), Postives = 66/142 (46.48%), Query Frame = 1
Query:  370 GLFRPLPAGGTLMAGASDALGIVGEGLSYVPTGGFGAGAVSRLVNYIAVIDYDVIDIHITRDTSLDLVIKRFNMLSPNIRMSAKGAIAHEYGKDIIDSPLDVVAHLNMTGKGAAILYSIDLLEDEQDKYGYWKGPEFRISGS 795
            G F  L AGG      +  +GI G               ++R+   +  IDY    I   R + L++V+  F +  P +RM   GA+ ++ G  I + PL V   ++  G  A     I LL  E D  GY+KGP+FRI+G+
Sbjct:    1 GTFYVLAAGGKAAQAGAAVVGIAGIVNKATGNKVGQIDTLNRVTQLLQKIDYTEFRIEAKRGSDLNIVLNPFLVQGPELRMFGTGAVTYQDGVAIANQPLLVTTFIDAKGSAAKTFSDIKLLSTEVDSAGYYKGPQFRITGT 142          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89113.20660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3C0Q9Q1_9GAMM2.310e-7551.89Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2G4HIF5_9BACT1.790e-1928.07Uncharacterized protein n=1 Tax=Opitutae bacterium... [more]
A0A3E1EFK0_9BACT5.640e-1727.89Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A3D2KNE9_9BACT1.220e-1224.09Uncharacterized protein n=2 Tax=Verrucomicrobia Ta... [more]
A0A257QFR4_9BACT4.380e-1030.99Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89113contigM-pyrifera_M_contig89113:15..809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score76.6
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog452637.Oter_3800
KEGG koko:K09800
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein involved in outer membrane biogenesis
EggNOG OGs3K73B@414999,46XET@74201,COG2982@1,COG2982@2
COG Functional cat.M
Best tax levelOpitutae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size795
Cds size795
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816801.4310343-CDS-M-pyrifera_M_contig89113:14..8091622816801.4310343-CDS-M-pyrifera_M_contig89113:14..809Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89113 15..809 +
1692278186.8254178-CDS-M-pyrifera_M_contig89113:14..8091692278186.8254178-CDS-M-pyrifera_M_contig89113:14..809Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89113 15..809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89113.20660.1prot_M-pyrifera_M_contig89113.20660.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89113 15..809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89113.20660.1

>prot_M-pyrifera_M_contig89113.20660.1 ID=prot_M-pyrifera_M_contig89113.20660.1|Name=mRNA_M-pyrifera_M_contig89113.20660.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=265bp
EVEFDFRKLFYSDYLAFNDIKGSAELTRTALVLNAFGARFHDSPITLDGG
LTFTAGETAPYTAKLRGKIADFDLNQFFTELTPNEESRIEGLFSVDIAID
GTSPNAAQFRNRLLLDLKMNSRDGLFRPLPAGGTLMAGASDALGIVGEGL
SYVPTGGFGAGAVSRLVNYIAVIDYDVIDIHITRDTSLDLVIKRFNMLSP
NIRMSAKGAIAHEYGKDIIDSPLDVVAHLNMTGKGAAILYSIDLLEDEQD
KYGYWKGPEFRISGS
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mRNA from alignment at M-pyrifera_M_contig89113:15..809+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89113.20660.1 ID=mRNA_M-pyrifera_M_contig89113.20660.1|Name=mRNA_M-pyrifera_M_contig89113.20660.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=795bp|location=Sequence derived from alignment at M-pyrifera_M_contig89113:15..809+ (Macrocystis pyrifera P11B4 male)
GAAGTCGAATTCGATTTCCGCAAGCTGTTCTACAGCGACTATCTCGCGTT CAACGATATCAAGGGCAGCGCCGAACTGACCCGCACGGCACTCGTATTGA ATGCGTTTGGCGCGCGGTTCCACGACAGCCCGATCACGCTCGACGGTGGC CTCACGTTCACCGCGGGCGAAACGGCGCCGTATACCGCGAAACTGCGCGG GAAGATCGCGGATTTCGATCTGAACCAGTTCTTCACCGAGCTCACGCCAA ACGAGGAATCGCGCATCGAAGGCCTGTTCAGCGTCGATATCGCGATCGAC GGCACGTCGCCGAATGCGGCGCAGTTTCGCAATCGCCTGCTGCTCGATCT GAAAATGAACAGCCGCGACGGACTGTTCCGGCCGCTGCCCGCCGGCGGTA CGTTGATGGCCGGCGCGTCCGATGCGCTCGGCATTGTCGGCGAAGGTCTG TCTTATGTGCCAACCGGTGGCTTCGGGGCCGGCGCCGTGTCGCGTCTCGT CAATTACATCGCCGTCATCGACTACGATGTCATCGACATCCACATCACGC GCGACACCTCGCTCGATCTCGTGATCAAGCGCTTCAATATGCTCAGTCCG AACATCCGCATGAGTGCGAAAGGCGCGATCGCGCACGAATACGGTAAAGA CATTATCGACAGCCCGCTCGATGTGGTCGCGCATCTGAACATGACGGGCA AGGGCGCGGCGATTCTCTACAGCATCGATCTGCTCGAAGACGAGCAGGAC AAGTACGGTTACTGGAAGGGACCGGAGTTCCGCATCTCGGGCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89113:15..809+

>mRNA_M-pyrifera_M_contig89113.20660.1 ID=mRNA_M-pyrifera_M_contig89113.20660.1|Name=mRNA_M-pyrifera_M_contig89113.20660.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1590bp|location=Sequence derived from alignment at M-pyrifera_M_contig89113:15..809+ (Macrocystis pyrifera P11B4 male)
GAAGTCGAATTCGATTTCCGCAAGCTGTTCTACAGCGACTATCTCGCGTT
CAACGATATCAAGGGCAGCGCCGAACTGACCCGCACGGCACTCGTATTGA
ATGCGTTTGGCGCGCGGTTCCACGACAGCCCGATCACGCTCGACGGTGGC
CTCACGTTCACCGCGGGCGAAACGGCGCCGTATACCGCGAAACTGCGCGG
GAAGATCGCGGATTTCGATCTGAACCAGTTCTTCACCGAGCTCACGCCAA
ACGAGGAATCGCGCATCGAAGGCCTGTTCAGCGTCGATATCGCGATCGAC
GGCACGTCGCCGAATGCGGCGCAGTTTCGCAATCGCCTGCTGCTCGATCT
GAAAATGAACAGCCGCGACGGACTGTTCCGGCCGCTGCCCGCCGGCGGTA
CGTTGATGGCCGGCGCGTCCGATGCGCTCGGCATTGTCGGCGAAGGTCTG
TCTTATGTGCCAACCGGTGGCTTCGGGGCCGGCGCCGTGTCGCGTCTCGT
CAATTACATCGCCGTCATCGACTACGATGTCATCGACATCCACATCACGC
GCGACACCTCGCTCGATCTCGTGATCAAGCGCTTCAATATGCTCAGTCCG
AACATCCGCATGAGTGCGAAAGGCGCGATCGCGCACGAATACGGTAAAGA
CATTATCGACAGCCCGCTCGATGTGGTCGCGCATCTGAACATGACGGGCA
AGGGCGCGGCGATTCTCTACAGCATCGATCTGCTCGAAGACGAGCAGGAC
AAGTACGGTTACTGGAAGGGACCGGAGTTCCGCATCTCGGGCTCCGAAGT
CGAATTCGATTTCCGCAAGCTGTTCTACAGCGACTATCTCGCGTTCAACG
ATATCAAGGGCAGCGCCGAACTGACCCGCACGGCACTCGTATTGAATGCG
TTTGGCGCGCGGTTCCACGACAGCCCGATCACGCTCGACGGTGGCCTCAC
GTTCACCGCGGGCGAAACGGCGCCGTATACCGCGAAACTGCGCGGGAAGA
TCGCGGATTTCGATCTGAACCAGTTCTTCACCGAGCTCACGCCAAACGAG
GAATCGCGCATCGAAGGCCTGTTCAGCGTCGATATCGCGATCGACGGCAC
GTCGCCGAATGCGGCGCAGTTTCGCAATCGCCTGCTGCTCGATCTGAAAA
TGAACAGCCGCGACGGACTGTTCCGGCCGCTGCCCGCCGGCGGTACGTTG
ATGGCCGGCGCGTCCGATGCGCTCGGCATTGTCGGCGAAGGTCTGTCTTA
TGTGCCAACCGGTGGCTTCGGGGCCGGCGCCGTGTCGCGTCTCGTCAATT
ACATCGCCGTCATCGACTACGATGTCATCGACATCCACATCACGCGCGAC
ACCTCGCTCGATCTCGTGATCAAGCGCTTCAATATGCTCAGTCCGAACAT
CCGCATGAGTGCGAAAGGCGCGATCGCGCACGAATACGGTAAAGACATTA
TCGACAGCCCGCTCGATGTGGTCGCGCATCTGAACATGACGGGCAAGGGC
GCGGCGATTCTCTACAGCATCGATCTGCTCGAAGACGAGCAGGACAAGTA
CGGTTACTGGAAGGGACCGGAGTTCCGCATCTCGGGCTCC
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