mRNA_M-pyrifera_M_contig89040.20641.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89040.20641.1
Unique NamemRNA_M-pyrifera_M_contig89040.20641.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89040.20641.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.910e-15
Identity = 52/141 (36.88%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   34 DVGSCPNTHLKCVLLGRGRAGKTSTLRVLQSGGRSAAAVRHDDRTVGVEAHELQLDLDAAQWNALLRRAGHPPVAHDAADARQLHLRAWDFAGQSQYSATHGFFLTPGSLFVLVLDVARLADNELSFQYWVGAWLDAVASR 456
            D G   +  LK VL+G G AGKTS    L+    S      ++RTVGVE  ++QL             A  P       +A +L ++ WDFAGQ  Y  TH  FLTPG+LFVLV+D+   +++  S +  +  WLD + +R
Sbjct:  211 DFGRTSSNRLKVVLVGLGNAGKTSVAVRLEGLASSKPLPTAEERTVGVEIRDIQL-------------APGPANGGSRGNA-ELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDIFAYSEDGHSREDALEQWLDILQAR 337          
BLAST of mRNA_M-pyrifera_M_contig89040.20641.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 9.670e-15
Identity = 50/141 (35.46%), Postives = 71/141 (50.35%), Query Frame = 1
Query:   34 DVGSCPNTHLKCVLLGRGRAGKTSTLRVLQSGGRSAAAVRHDDRTVGVEAHELQLDLDAAQWNALLRRAGHPPVAHDAADARQLHLRAWDFAGQSQYSATHGFFLTPGSLFVLVLDVARLADNELSFQYWVGAWLDAVASR 456
            D G   +  LK VL+G G AGKTS    L+    S       +RTVGVE  +++L              G  P    +    +L ++ WDFAGQ  Y  TH  FLTPG+LFVLV+D+   +++  S +  +  WLD + +R
Sbjct:   39 DFGRTSSNRLKVVLVGLGNAGKTSVAVRLEGLAPSKPLPSAKERTVGVEIRDIRL--------------GSGPANARSGGNAELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFAYSEDGHSREDALEQWLDILQAR 165          
BLAST of mRNA_M-pyrifera_M_contig89040.20641.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.900e-12
Identity = 50/147 (34.01%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   19 YYHDLD-VGSCPNTHLKCVLLGRGRAGKTSTLRVLQSGGRSAAAVRHDDRTVGVEAHELQLDLDAAQWNALLRRAGHPPVAHDAADARQLHLRAWDFAGQSQYSATHGFFLTPGSLFVLVLDVARLADNELSFQYWVGAWLDAVASR 456
            +  DLD  G   +  LK VL+G G AGKTS    L+     ++  + ++RTVGVE  +++L              G  P    +    +L +  WDFAGQ  Y  TH  FLTPG+LFVLV+D+    + + S +  +  WL+ + +R
Sbjct:  341 FLRDLDDYGRAWSNRLKVVLVGLGEAGKTSIATRLEDR-LGSSCPKPEERTVGVEIRDIKL--------------GPGPTNEGSGPNVELDVSLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFTYTEGQ-SREDALEQWLEILQAR 471          
BLAST of mRNA_M-pyrifera_M_contig89040.20641.1 vs. uniprot
Match: A0A0M0JFJ9_9EUKA (Leucine rich repeat-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JFJ9_9EUKA)

HSP 1 Score: 72.8 bits (177), Expect = 2.940e-12
Identity = 50/150 (33.33%), Postives = 79/150 (52.67%), Query Frame = 1
Query:   10 LRQYYHDLDV-GSCPNTHLKCVLLGRGRAGKTSTLRVLQSGGRSAAAVRHDDRTVGVEAHELQLDLDAAQWNALLRRAGHPPVAHDAADARQLHLRAWDFAGQSQYSATHGFFLTPGSLFVLVLDVARLADNELSFQYWVGAWLDAVASR 456
            LR+Y+  ++  G+  +   K VL+G G+AGK+STLR ++ G         + R  G +   +QLD+    W   L   G PP      D R + L AWDFAGQ +Y+A    +L  G+L++L++   R  D E+    +   WLDA+ ++
Sbjct:  205 LRRYFEAVERHGATTSRRAKMVLVGTGKAGKSSTLRGMKYG---------EPRPFGDDERTVQLDI----WTLAL---GEPPAPGAEEDMR-IVLSAWDFAGQPEYAAGQQQYLIKGALYLLLVPAHRATDEEVDEVLF--RWLDALQAK 335          
BLAST of mRNA_M-pyrifera_M_contig89040.20641.1 vs. uniprot
Match: A0A7S2D8Y6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D8Y6_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 6.240e-12
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1
Query:   40 GSCPNTHLKCVLLGRGRAGKTSTLRVLQSGGRSAAAVRHDDRTVGVEAHELQLDLDAAQWNALLRRAGHPPVAHDAADARQLHLRAWDFAGQSQYSATHGFFLTPGSLFVLVLDVARLADNELSFQYWVGAWLDAVASR 456
            G+  +   K VL+G G+AGK+STLR ++ G         + R  G +   +QLD+    W   L  A  P +  D  D R L L AWDFAGQ +Y+A    +L  G+L++L++ V R  D E         WLDA+ ++
Sbjct:    4 GATTSRRAKMVLVGTGKAGKSSTLRGMKHG---------ESRPFGEDERTVQLDI----WTVALGEA--PSI--DEEDTR-LILSAWDFAGQPEYAAGQQQYLIKGALYLLLVPVHRATDEEADEVLL--RWLDALQAK 122          
BLAST of mRNA_M-pyrifera_M_contig89040.20641.1 vs. uniprot
Match: A0A6H5L2L4_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L4_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 8.670e-12
Identity = 49/141 (34.75%), Postives = 70/141 (49.65%), Query Frame = 1
Query:   34 DVGSCPNTHLKCVLLGRGRAGKTSTLRVLQSGGRSAAAVRHDDRTVGVEAHELQLDLDAAQWNALLRRAGHPPVAHDAADARQLHLRAWDFAGQSQYSATHGFFLTPGSLFVLVLDVARLADNELSFQYWVGAWLDAVASR 456
            D G      LK VL+G G AGKTS    L+ G   ++  + ++RTVGVE  +++L              G  P         +L +  WDFAGQ  Y  TH  FLTPG+LFVLV+D+      + S +  +  WL+ + +R
Sbjct:   92 DYGRAWYNRLKVVLVGLGEAGKTSIATRLE-GRLGSSCPKPEERTVGVEIRDIKL--------------GPGPTNEGIGPNDELDVSLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFTYEVGQ-SKEDALEQWLEILQAR 216          
BLAST of mRNA_M-pyrifera_M_contig89040.20641.1 vs. uniprot
Match: A0A7J4FT26_9EURY (GTP-binding protein n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A7J4FT26_9EURY)

HSP 1 Score: 69.7 bits (169), Expect = 5.230e-11
Identity = 49/142 (34.51%), Postives = 69/142 (48.59%), Query Frame = 1
Query:    7 TLRQYYHDLDVGSC-PNTHLKCVLLGRGRAGKTSTL-RVLQSGGRSAAAVRHDDRTVGVEAHELQLDLDAAQWNALLRRAGHPPVAHDAADARQLHLRAWDFAGQSQYSATHGFFLTPGSLFVLVLDVARLADNELSFQYWV 426
            T+  YY   + G+  P    K +L+G+G  GKTS + R+L           H+++T G+E  E Q+                      A D +++ L  WDF GQ    ATH FFLT  SL++LVLD ARL D E   +YW+
Sbjct:   79 TIINYYLQHETGATKPLNEAKMLLVGQGSVGKTSLVKRMLWD-----EFDPHEEKTEGIEIEEWQV----------------------AVDDQKIGLNVWDFGGQEIMHATHQFFLTKRSLYLLVLD-ARLGDEENRIEYWL 192          
BLAST of mRNA_M-pyrifera_M_contig89040.20641.1 vs. uniprot
Match: Q648Z4_9ARCH (Leucine-rich-repeat protein n=1 Tax=uncultured archaeon GZfos35D7 TaxID=285404 RepID=Q648Z4_9ARCH)

HSP 1 Score: 69.7 bits (169), Expect = 5.350e-11
Identity = 47/141 (33.33%), Postives = 68/141 (48.23%), Query Frame = 1
Query:    7 TLRQYYHDLDVGSC-PNTHLKCVLLGRGRAGKTSTLRVLQSGGRSAAAVRHDDRTVGVEAHELQLDLDAAQWNALLRRAGHPPVAHDAADARQLHLRAWDFAGQSQYSATHGFFLTPGSLFVLVLDVARLADNELSFQYWV 426
            T+  YY   + G   P    K +L+G+G  GKTS ++ L     +     H+++T G+E  E Q+ +D                       +++ L  WDF GQ    ATH FFLT  SL++LVLD ARL D E   +YW+
Sbjct:  112 TIINYYLQHETGEKKPLNEAKMILVGQGSVGKTSLVKRLLWDEFNL----HEEKTKGIEIEEWQVTVDN----------------------QKIRLNVWDFGGQEIMHATHQFFLTKRSLYLLVLD-ARLGDEENRIEYWL 225          
BLAST of mRNA_M-pyrifera_M_contig89040.20641.1 vs. uniprot
Match: A0A2G6E9H2_9BACT (GTPase n=1 Tax=candidate division KSB3 bacterium TaxID=2044937 RepID=A0A2G6E9H2_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 5.580e-11
Identity = 51/146 (34.93%), Postives = 65/146 (44.52%), Query Frame = 1
Query:   19 YYHDLDVGSCPNTHLKCVLLGRGRAGKTSTLRVLQSGGRSAAAVRHDDRTVGVEAHELQLDLDAAQWNALLRRAGHPPVAHDAADARQLHLRAWDFAGQSQYSATHGFFLTPGSLFVLVLDVARLADNELSFQYWVGAWLDAVASR 456
            +  +L  GS      K +L+G G  GKTS LR L+        V   D T G++   L                    V H   DA  +HL++WDF GQ  Y ATH FFLT  SLFVLV + AR    +    YW    LD + +R
Sbjct:  345 FLQELQDGSSQQWRSKLILVGEGGVGKTSLLRALKH----EPFVEGLDTTHGIQTSMLN-------------------VPHPENDAVSMHLQSWDFGGQEIYHATHQFFLTDRSLFVLVWN-ARHGYEQGKIYYW----LDQIQAR 462          
BLAST of mRNA_M-pyrifera_M_contig89040.20641.1 vs. uniprot
Match: L8GPG0_ACACA (Leucine-rich repeat and WD repeat-containing protein 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPG0_ACACA)

HSP 1 Score: 69.3 bits (168), Expect = 7.990e-11
Identity = 46/138 (33.33%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   19 YYHDLDVGSCPNTHLKCVLLGRGRAGKTSTLRVLQSGG--RSAAAVRHDDRTVGVEAHELQLDLDAAQWNALLRRAGHPPVAHDAADARQLHLRAWDFAGQSQYSATHGFFLTPGSLFVLVLDVARLADNELSFQYWV 426
            Y   L  G  P   LK + +G+   GKTS +R LQ  G  R +   RHD  +    A      +D   WN  +     P       DA  + L AWDFAGQ  Y ATH FFL+  SLF+++ ++  +  + +  +YW+
Sbjct:  660 YLGQLLKGQEPCYRLKVMFVGQENVGKTSVMRALQRKGVSRKSTITRHDTISPTHAAPVSTDGIDINGWNMPMDPVWGP-------DAPHVELSAWDFAGQEIYYATHQFFLSERSLFLVLFNLTSIVQSRV--EYWL 788          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89040.20641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPJ1_9PHAE3.910e-1536.88Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JSN1_9PHAE9.670e-1535.46Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FU35_ECTSI1.900e-1234.01LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A0M0JFJ9_9EUKA2.940e-1233.33Leucine rich repeat-containing protein n=1 Tax=Chr... [more]
A0A7S2D8Y6_9EUKA6.240e-1235.25Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A6H5L2L4_9PHAE8.670e-1234.75Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7J4FT26_9EURY5.230e-1134.51GTP-binding protein n=1 Tax=Methanosarcinales arch... [more]
Q648Z4_9ARCH5.350e-1133.33Leucine-rich-repeat protein n=1 Tax=uncultured arc... [more]
A0A2G6E9H2_9BACT5.580e-1134.93GTPase n=1 Tax=candidate division KSB3 bacterium T... [more]
L8GPG0_ACACA7.990e-1133.33Leucine-rich repeat and WD repeat-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89040contigM-pyrifera_M_contig89040:74..529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score81.6
Seed ortholog evalue3.4e-13
Seed eggNOG ortholog7739.XP_002614028.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of toll-like receptor 2 signaling pathway
EggNOG OGs39TV9@33154,3BD7Q@33208,3CYH1@33213,48BK8@7711,COG4886@1,KOG0619@2759,KOG3573@1,KOG3573@2759
COG Functional cat.O
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size456
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.9568582-CDS-M-pyrifera_M_contig89040:73..5291622816799.9568582-CDS-M-pyrifera_M_contig89040:73..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89040 74..529 -
1692278186.0806863-CDS-M-pyrifera_M_contig89040:73..5291692278186.0806863-CDS-M-pyrifera_M_contig89040:73..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89040 74..529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89040.20641.1prot_M-pyrifera_M_contig89040.20641.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89040 74..529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89040.20641.1

>prot_M-pyrifera_M_contig89040.20641.1 ID=prot_M-pyrifera_M_contig89040.20641.1|Name=mRNA_M-pyrifera_M_contig89040.20641.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
MRTLRQYYHDLDVGSCPNTHLKCVLLGRGRAGKTSTLRVLQSGGRSAAAV
RHDDRTVGVEAHELQLDLDAAQWNALLRRAGHPPVAHDAADARQLHLRAW
DFAGQSQYSATHGFFLTPGSLFVLVLDVARLADNELSFQYWVGAWLDAVA
SR
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mRNA from alignment at M-pyrifera_M_contig89040:74..529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89040.20641.1 ID=mRNA_M-pyrifera_M_contig89040.20641.1|Name=mRNA_M-pyrifera_M_contig89040.20641.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig89040:74..529- (Macrocystis pyrifera P11B4 male)
ATGCGCACGCTGCGGCAGTACTACCACGACCTCGACGTGGGCTCCTGCCC CAACACGCACCTCAAGTGCGTGCTGCTCGGCCGCGGCCGCGCGGGCAAGA CCAGCACCCTGCGCGTGCTGCAGTCCGGCGGGCGCTCCGCGGCGGCGGTG CGTCACGACGACCGCACGGTGGGCGTGGAGGCGCACGAGCTGCAGCTGGA TCTGGACGCGGCGCAGTGGAACGCGCTGCTGCGGCGCGCGGGCCACCCGC CGGTGGCGCACGACGCAGCGGATGCGCGGCAGCTGCACCTGCGCGCGTGG GACTTTGCGGGGCAGAGCCAGTACAGCGCCACGCACGGCTTCTTCCTCAC CCCCGGCTCCCTCTTCGTGCTGGTGCTGGACGTGGCGCGGCTGGCGGACA ACGAGCTGAGCTTCCAGTACTGGGTCGGCGCCTGGCTGGACGCTGTGGCC TCGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89040:74..529-

>mRNA_M-pyrifera_M_contig89040.20641.1 ID=mRNA_M-pyrifera_M_contig89040.20641.1|Name=mRNA_M-pyrifera_M_contig89040.20641.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig89040:74..529- (Macrocystis pyrifera P11B4 male)
ATGCGCACGCTGCGGCAGTACTACCACGACCTCGACGTGGGCTCCTGCCC
CAACACGCACCTCAAGTGCGTGCTGCTCGGCCGCGGCCGCGCGGGCAAGA
CCAGCACCCTGCGCGTGCTGCAGTCCGGCGGGCGCTCCGCGGCGGCGGTG
CGTCACGACGACCGCACGGTGGGCGTGGAGGCGCACGAGCTGCAGCTGGA
TCTGGACGCGGCGCAGTGGAACGCGCTGCTGCGGCGCGCGGGCCACCCGC
CGGTGGCGCACGACGCAGCGGATGCGCGGCAGCTGCACCTGCGCGCGTGG
GACTTTGCGGGGCAGAGCCAGTACAGCGCCACGCACGGCTTCTTCCTCAC
CCCCGGCTCCCTCTTCGTGCTGGTGCTGGACGTGGCGCGGCTGGCGGACA
ACGAGCTGAGCTTCCAGTACTGGGTCGGCGCCTGGCTGGACGCTGTGGCC
TCGCGCATGCGCACGCTGCGGCAGTACTACCACGACCTCGACGTGGGCTC
CTGCCCCAACACGCACCTCAAGTGCGTGCTGCTCGGCCGCGGCCGCGCGG
GCAAGACCAGCACCCTGCGCGTGCTGCAGTCCGGCGGGCGCTCCGCGGCG
GCGGTGCGTCACGACGACCGCACGGTGGGCGTGGAGGCGCACGAGCTGCA
GCTGGATCTGGACGCGGCGCAGTGGAACGCGCTGCTGCGGCGCGCGGGCC
ACCCGCCGGTGGCGCACGACGCAGCGGATGCGCGGCAGCTGCACCTGCGC
GCGTGGGACTTTGCGGGGCAGAGCCAGTACAGCGCCACGCACGGCTTCTT
CCTCACCCCCGGCTCCCTCTTCGTGCTGGTGCTGGACGTGGCGCGGCTGG
CGGACAACGAGCTGAGCTTCCAGTACTGGGTCGGCGCCTGGCTGGACGCT
GTGGCCTCGCGC
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