mRNA_M-pyrifera_M_contig88918.20626.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88918.20626.1
Unique NamemRNA_M-pyrifera_M_contig88918.20626.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88918.20626.1 vs. uniprot
Match: A0A397C456_9STRA (EF-hand domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C456_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.660e-48
Identity = 81/143 (56.64%), Postives = 106/143 (74.13%), Query Frame = 1
Query:    1 GGGDEFMAVKPWLGAIKEPTWYKPRRGASEAPDAALELEWVHGYAGHRCSNNVRYTASGE-VVYHAAAVGVVYNKERHTQRFHVEHTDDVLCLAVHPNGRLVVTGEAGRRPKIIVWDCHSMRSLAVLQGFHKRGVVHVAFDPR 426
            G GDEFMAVKPW+GAI+EPT +  +   +EAP ++LEL +V+GY G    NN+ + A    ++YHAAA+G+VY+K+ H Q FH  HTDD++CLAVHP G LV +GE GR PK+I+WD +S  SL VL GFHKRGV HVAF+ +
Sbjct: 1438 GKGDEFMAVKPWVGAIREPTNWTSKPDDNEAPLSSLELSFVYGYRGFDTRNNLSFGADANTIIYHAAALGIVYDKQHHRQIFHYGHTDDIMCLAVHPEGHLVASGERGRTPKVILWDANSGSSLCVLSGFHKRGVSHVAFNTK 1580          
BLAST of mRNA_M-pyrifera_M_contig88918.20626.1 vs. uniprot
Match: A0A3R6Y278_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6Y278_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.660e-48
Identity = 81/143 (56.64%), Postives = 106/143 (74.13%), Query Frame = 1
Query:    1 GGGDEFMAVKPWLGAIKEPTWYKPRRGASEAPDAALELEWVHGYAGHRCSNNVRYTASGE-VVYHAAAVGVVYNKERHTQRFHVEHTDDVLCLAVHPNGRLVVTGEAGRRPKIIVWDCHSMRSLAVLQGFHKRGVVHVAFDPR 426
            G GDEFMAVKPW+GAI+EPT +  +   +EAP ++LEL +V+GY G    NN+ + A    ++YHAAA+G+VY+K+ H Q FH  HTDD++CLAVHP G LV +GE GR PK+I+WD +S  SL VL GFHKRGV HVAF+ +
Sbjct: 1247 GKGDEFMAVKPWVGAIREPTNWTSKPDDNEAPLSSLELSFVYGYRGFDTRNNLSFGADANTIIYHAAALGIVYDKQHHRQIFHYGHTDDIMCLAVHPEGHLVASGERGRTPKVILWDANSGSSLCVLSGFHKRGVSHVAFNTK 1389          
BLAST of mRNA_M-pyrifera_M_contig88918.20626.1 vs. uniprot
Match: W4GYR1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYR1_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.670e-48
Identity = 81/143 (56.64%), Postives = 106/143 (74.13%), Query Frame = 1
Query:    1 GGGDEFMAVKPWLGAIKEPTWYKPRRGASEAPDAALELEWVHGYAGHRCSNNVRYTASGE-VVYHAAAVGVVYNKERHTQRFHVEHTDDVLCLAVHPNGRLVVTGEAGRRPKIIVWDCHSMRSLAVLQGFHKRGVVHVAFDPR 426
            G GDEFMAVKPW+GAI+EPT +  +   +EAP ++LEL +V+GY G    NN+ + A    ++YHAAA+G+VY+K+ H Q FH  HTDD++CLAVHP G LV +GE GR PK+I+WD +S  SL VL GFHKRGV HVAF+ +
Sbjct: 1608 GKGDEFMAVKPWVGAIREPTNWTSKPDDNEAPLSSLELSFVYGYRGFDTRNNLSFGAGANTIIYHAAALGIVYDKQHHRQIFHYGHTDDIMCLAVHPEGHLVASGERGRTPKVILWDANSGSSLCVLSGFHKRGVSHVAFNTK 1750          
BLAST of mRNA_M-pyrifera_M_contig88918.20626.1 vs. uniprot
Match: A0A024U2H9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2H9_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.280e-48
Identity = 80/141 (56.74%), Postives = 107/141 (75.89%), Query Frame = 1
Query:    7 GDEFMAVKPWLGAIKEPTWYKPRRGASEAPDAALELEWVHGYAGHRCSNNVRYTA-SGEVVYHAAAVGVVYNKERHTQRFHVEHTDDVLCLAVHPNGRLVVTGEAGRRPKIIVWDCHSMRSLAVLQGFHKRGVVHVAFDPR 426
            GDEFMAVKPWLGAI+EP+ + P+   +EAP ++LEL +V+GY G    NN+ Y A +  +VYHAAA+G+VY+ ++H Q FH  HTDD++CLAVHP G +V +GE GR PK+I+WD +S  +L VL GFH+RGV HVAF+ R
Sbjct: 1601 GDEFMAVKPWLGAIREPSNWTPKPDDAEAPQSSLELSFVYGYRGFDTRNNLSYGADTNTIVYHAAALGIVYDVQQHRQIFHYGHTDDIMCLAVHPEGHVVASGERGRMPKVILWDANSGSTLCVLSGFHQRGVSHVAFNCR 1741          
BLAST of mRNA_M-pyrifera_M_contig88918.20626.1 vs. uniprot
Match: A0A485L4K3_9STRA (Aste57867_15986 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4K3_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.000e-47
Identity = 79/141 (56.03%), Postives = 104/141 (73.76%), Query Frame = 1
Query:    7 GDEFMAVKPWLGAIKEPTWYKPRRGASEAPDAALELEWVHGYAGHRCSNNVRYTA-SGEVVYHAAAVGVVYNKERHTQRFHVEHTDDVLCLAVHPNGRLVVTGEAGRRPKIIVWDCHSMRSLAVLQGFHKRGVVHVAFDPR 426
            GDEF+AVKPWLGAI+EPT +  ++   E P ++LEL +V+GY G    NN+ Y A +  ++YHAAA+GVVY+K +H Q FH  HTDD++CL VHP G LV TGE G+ PK+IVWD +S  SL V+ GFHKRG+ HVAF+ +
Sbjct: 1588 GDEFLAVKPWLGAIREPTNWTAKKDDLEEPASSLELSFVYGYRGFDTRNNLDYGADTNTIIYHAAALGVVYDKSQHRQIFHYGHTDDIMCLTVHPEGHLVATGERGKCPKVIVWDANSGSSLCVIVGFHKRGISHVAFNTK 1728          
BLAST of mRNA_M-pyrifera_M_contig88918.20626.1 vs. uniprot
Match: A0A7S1CBA4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBA4_9STRA)

HSP 1 Score: 169 bits (428), Expect = 4.380e-47
Identity = 77/142 (54.23%), Postives = 102/142 (71.83%), Query Frame = 1
Query:    1 GGGDEFMAVKPWLGAIKEPTWYKPRRGASEAPDAALELEWVHGYAGHRCSNNVRYTASGEVVYHAAAVGVVYNKERHTQRFHVEHTDDVLCLAVHPNGRLVVTGEAGRRPKIIVWDCHSMRSLAVLQGFHKRGVVHVAFDPR 426
            GGGDEFMAVKPWLGAI EPT   P +     PD  L LEWVHGY      +N+RYT +GE+VY AAAVG+  N E+  QRF++ H DDV+CLA+HP+G  V TG+ GR+P+++VW   +M +++V++GFH+R V  VAFD +
Sbjct:   83 GGGDEFMAVKPWLGAIVEPT--VPPKFDPSVPDMELSLEWVHGYRAQDARDNLRYTKAGEMVYTAAAVGITLNTEKWLQRFNLTHNDDVICLAMHPDGIHVATGQMGRKPRVVVWRTDTMETVSVIEGFHRRAVCAVAFDKK 222          
BLAST of mRNA_M-pyrifera_M_contig88918.20626.1 vs. uniprot
Match: A0A067BPL2_SAPPC (EF-hand domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BPL2_SAPPC)

HSP 1 Score: 170 bits (430), Expect = 3.250e-46
Identity = 78/140 (55.71%), Postives = 101/140 (72.14%), Query Frame = 1
Query:    4 GGDEFMAVKPWLGAIKEPTWYKPRRGASEAPDAALELEWVHGYAGHRCSNNVRYTA-SGEVVYHAAAVGVVYNKERHTQRFHVEHTDDVLCLAVHPNGRLVVTGEAGRRPKIIVWDCHSMRSLAVLQGFHKRGVVHVAFD 420
            GGDEF+AVKPWLGAI+EP+ +  +    +AP   L+L +VHGY G    NN+R+ A S   +YH AA+GVVYNK+ H Q FH  HT+D+LCLAVHP G LVV+GE G+ PK+I+WD +S  SL  + GFH+RGV  VAF+
Sbjct: 1579 GGDEFLAVKPWLGAIREPSGWTSKPDDGDAPSGNLDLVFVHGYRGFDTRNNLRFGADSSSCIYHTAALGVVYNKQTHRQIFHYGHTNDILCLAVHPEGHLVVSGEVGKTPKLILWDANSGSSLCTMAGFHRRGVALVAFN 1718          
BLAST of mRNA_M-pyrifera_M_contig88918.20626.1 vs. uniprot
Match: A0A6G0WWN9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWN9_9STRA)

HSP 1 Score: 170 bits (430), Expect = 3.260e-46
Identity = 77/141 (54.61%), Postives = 99/141 (70.21%), Query Frame = 1
Query:    7 GDEFMAVKPWLGAIKEPTWYKPRRGASEAPDAALELEWVHGYAGHRCSNNVRYTA-SGEVVYHAAAVGVVYNKERHTQRFHVEHTDDVLCLAVHPNGRLVVTGEAGRRPKIIVWDCHSMRSLAVLQGFHKRGVVHVAFDPR 426
            GDE +AVKPW GAI+EPT + P+ G    P ++LEL +V+GY G+   NN+ Y A +  +VYH AAVG+VY+K+ H Q FH +HT  + CLAVHP G LV TGE GR PK+IVWD +S  SL +L GFH RG+ HV F+ R
Sbjct: 1609 GDEALAVKPWRGAIREPTNWSPKPGDDNEPTSSLELSFVYGYRGYDLRNNIDYGADTNTIVYHTAAVGIVYDKQTHRQIFHFDHTKAITCLAVHPEGHLVATGEQGRLPKVIVWDANSGSSLCILSGFHSRGISHVTFNAR 1749          
BLAST of mRNA_M-pyrifera_M_contig88918.20626.1 vs. uniprot
Match: A0A1V9YC52_9STRA (Microtubule-associated protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YC52_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.830e-44
Identity = 80/140 (57.14%), Postives = 98/140 (70.00%), Query Frame = 1
Query:    7 GDEFMAVKPWLGAIKEPTWY--KPRRGASEAPDAALELEWVHGYAGHRCSNNVRYTASGEV-VYHAAAVGVVYNKERHTQRFHVEHTDDVLCLAVHPNGRLVVTGEAGRRPKIIVWDCHSMRSLAVLQGFHKRGVVHVAF 417
            GDEF+AVKPWLGAI+EP+ +  KP  GA  AP   L+L +VHGY G    NN+RY A     +YH AAVG+VY+K  H Q FH  HTDD++CLAVHP G LV TGE G+ PK+I+WD +S  SL  + GFH+RGV  VAF
Sbjct: 1594 GDEFLAVKPWLGAIREPSGWTAKPEDGA--APAGQLDLAFVHGYRGFDTRNNLRYGADASTCIYHTAAVGIVYSKAHHRQIFHFGHTDDIVCLAVHPEGHLVATGETGKTPKLILWDANSGSSLCTIVGFHRRGVALVAF 1731          
BLAST of mRNA_M-pyrifera_M_contig88918.20626.1 vs. uniprot
Match: A0A024UD07_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UD07_9STRA)

HSP 1 Score: 163 bits (412), Expect = 8.650e-44
Identity = 72/138 (52.17%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    7 GDEFMAVKPWLGAIKEPTWYKPRRGASEAPDAALELEWVHGYAGHRCSNNVRYTASGEVVYHAAAVGVVYNKERHTQRFHVEHTDDVLCLAVHPNGRLVVTGEAGRRPKIIVWDCHSMRSLAVLQGFHKRGVVHVAFD 420
            GDEFMAVKPW+GAI  P+   P +     P+  + L+WV GY      NN+RY A+G++VYHAAAVG++Y+++ +TQ+ H+ HTDD+LC+A+ P+GR V TGE G++P I VWD  S  +L+VL GFH RGVV V F 
Sbjct: 1658 GDEFMAVKPWIGAITAPS--NPPKENPREPEVTMHLDWVFGYQTELSRNNLRYNANGQIVYHAAAVGIMYDRDTNTQKHHLGHTDDILCMAMSPSGRFVATGERGKKPTIRVWDAKSGATLSVLAGFHSRGVVSVTFS 1793          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88918.20626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397C456_9STRA1.660e-4856.64EF-hand domain-containing protein n=4 Tax=Aphanomy... [more]
A0A3R6Y278_9STRA1.660e-4856.64Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4GYR1_9STRA1.670e-4856.64Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024U2H9_9STRA2.280e-4856.74Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A485L4K3_9STRA2.000e-4756.03Aste57867_15986 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S1CBA4_9STRA4.380e-4754.23Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A067BPL2_SAPPC3.250e-4655.71EF-hand domain-containing protein n=2 Tax=Saproleg... [more]
A0A6G0WWN9_9STRA3.260e-4654.61Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9YC52_9STRA1.830e-4457.14Microtubule-associated protein n=1 Tax=Achlya hypo... [more]
A0A024UD07_9STRA8.650e-4452.17Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88918contigM-pyrifera_M_contig88918:315..743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue4.2e-39
Seed eggNOG ortholog157072.XP_008870564.1
KEGG koko:K18595,ko:K18596,ko:K18597,ko:K18598,ko:K21763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitogen-activated protein
EggNOG OGsCOG2319@1,KOG1408@1,KOG1408@2759,KOG2106@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Exons1
Model size429
Cds size411
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.0030274-UTR-M-pyrifera_M_contig88918:314..3321622816799.0030274-UTR-M-pyrifera_M_contig88918:314..332Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88918 315..332 +
1692278185.415758-UTR-M-pyrifera_M_contig88918:314..3321692278185.415758-UTR-M-pyrifera_M_contig88918:314..332Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88918 315..332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.0160623-CDS-M-pyrifera_M_contig88918:332..7431622816799.0160623-CDS-M-pyrifera_M_contig88918:332..743Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88918 333..743 +
1692278185.4261148-CDS-M-pyrifera_M_contig88918:332..7431692278185.4261148-CDS-M-pyrifera_M_contig88918:332..743Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88918 333..743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88918.20626.1prot_M-pyrifera_M_contig88918.20626.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88918 333..743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88918.20626.1

>prot_M-pyrifera_M_contig88918.20626.1 ID=prot_M-pyrifera_M_contig88918.20626.1|Name=mRNA_M-pyrifera_M_contig88918.20626.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MAVKPWLGAIKEPTWYKPRRGASEAPDAALELEWVHGYAGHRCSNNVRYT
ASGEVVYHAAAVGVVYNKERHTQRFHVEHTDDVLCLAVHPNGRLVVTGEA
GRRPKIIVWDCHSMRSLAVLQGFHKRGVVHVAFDPR*
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mRNA from alignment at M-pyrifera_M_contig88918:315..743+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88918.20626.1 ID=mRNA_M-pyrifera_M_contig88918.20626.1|Name=mRNA_M-pyrifera_M_contig88918.20626.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig88918:315..743+ (Macrocystis pyrifera P11B4 male)
GGCGGCGGCGACGAGTTCATGGCGGTCAAGCCGTGGCTGGGCGCGATCAA GGAGCCGACGTGGTACAAGCCGCGGCGCGGCGCGTCCGAGGCGCCGGACG CGGCGCTGGAGCTGGAGTGGGTGCACGGCTACGCCGGCCACCGGTGCAGC AACAACGTGCGGTACACGGCGAGCGGCGAGGTGGTGTACCACGCTGCGGC GGTGGGCGTGGTGTACAACAAGGAGCGGCACACGCAGCGGTTCCACGTGG AGCACACGGACGACGTGCTGTGTCTGGCGGTGCACCCGAACGGGCGGCTG GTGGTGACGGGGGAGGCGGGAAGGCGGCCTAAGATCATTGTGTGGGACTG CCACAGCATGCGCAGTCTGGCCGTGCTGCAGGGGTTCCACAAGAGGGGCG TCGTTCATGTGGCGTTTGACCCCAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88918:315..743+

>mRNA_M-pyrifera_M_contig88918.20626.1 ID=mRNA_M-pyrifera_M_contig88918.20626.1|Name=mRNA_M-pyrifera_M_contig88918.20626.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig88918:315..743+ (Macrocystis pyrifera P11B4 male)
ATGGCGGTCAAGCCGTGGCTGGGCGCGATCAAGGAGCCGACGTGGTACAA
GCCGCGGCGCGGCGCGTCCGAGGCGCCGGACGCGGCGCTGGAGCTGGAGT
GGGTGCACGGCTACGCCGGCCACCGGTGCAGCAACAACGTGCGGTACACG
GCGAGCGGCGAGGTGGTGTACCACGCTGCGGCGGTGGGCGTGGTGTACAA
CAAGGAGCGGCACACGCAGCGGTTCCACGTGGAGCACACGGACGACGTGC
TGTGTCTGGCGGTGCACCCGAACGGGCGGCTGGTGGTGACGGGGGAGGCG
GGAAGGCGGCCTAAGATCATTGTGTGGGACTGCCACAGCATGCGCAGTCT
GGCCGTGCTGCAGGGGTTCCACAAGAGGGGCGTCGTTCATGTGGCGTTTG
ACCCCAGGTGAATGGCGGTCAAGCCGTGGCTGGGCGCGATCAAGGAGCCG
ACGTGGTACAAGCCGCGGCGCGGCGCGTCCGAGGCGCCGGACGCGGCGCT
GGAGCTGGAGTGGGTGCACGGCTACGCCGGCCACCGGTGCAGCAACAACG
TGCGGTACACGGCGAGCGGCGAGGTGGTGTACCACGCTGCGGCGGTGGGC
GTGGTGTACAACAAGGAGCGGCACACGCAGCGGTTCCACGTGGAGCACAC
GGACGACGTGCTGTGTCTGGCGGTGCACCCGAACGGGCGGCTGGTGGTGA
CGGGGGAGGCGGGAAGGCGGCCTAAGATCATTGTGTGGGACTGCCACAGC
ATGCGCAGTCTGGCCGTGCTGCAGGGGTTCCACAAGAGGGGCGTCGTTCA
TGTGGCGTTTGACCCCAGGTGA
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