mRNA_M-pyrifera_M_contig88912.20625.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88912.20625.1
Unique NamemRNA_M-pyrifera_M_contig88912.20625.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: A0A5J4YEM1_9CHLO (Replication factor C subunit 3-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YEM1_9CHLO)

HSP 1 Score: 254 bits (649), Expect = 2.770e-80
Identity = 130/249 (52.21%), Postives = 176/249 (70.68%), Query Frame = 1
Query:    1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSRVT-VEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744
            +H+ I   L K+VASGD P  +F+GP GAGKKT ++A LRE+YGA A+KVKVE R +K   P+RV  VE++L+SS HHVE+ P+D GN D  +VQ I+K+ A S  I+   QK GFK++VLNE DRLS +AQH+LRRTME  +A CRLVLC ++  KVI P+RSRCL +RV AP+  E+  +L  +A++EG Q+ D + ++I Q S RNLR+A+LC E    +Q+PF + Q  Q   WE Y+  +ANDI
Sbjct:   17 LHKDIGENLSKLVASGDCPHTLFYGPPGAGKKTLILAFLREVYGAGADKVKVETRPWKIQLPTRVLEVELTLVSSNHHVEMNPSDVGNNDRYVVQEILKDMAKSRPINMKGQK-GFKMLVLNETDRLSAQAQHSLRRTMEKYSASCRLVLCCNNVSKVIEPVRSRCLCIRVAAPTNPEVEDMLSHVAQKEGLQLPDRLRQRIAQTSERNLRRALLCFETCHMTQYPFKDDQAVQTTDWELYVQEIANDI 264          
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: D5ADN5_PICSI (AAA domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5ADN5_PICSI)

HSP 1 Score: 252 bits (644), Expect = 1.130e-79
Identity = 129/249 (51.81%), Postives = 177/249 (71.08%), Query Frame = 1
Query:    1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744
            +H  I   LK +V+  D P L+F+GPSGAGKKT ++ALL++++G  AEKVKVE + +K    +R + VE++ +SS HHVEL P+DAG +D  +VQ I+KE A S  I DV+  +GFK++VLNEVD+LSK AQH+LRRTME  +  CR++LC  S  KV+  +RSRCL +R+ +PS+ +I  VLE IAK+EG Q+    T +I Q+S RNLR+AILC EA K  Q+PFT+ Q  Q   WE YI+ +A+DI
Sbjct:   17 VHREIANNLKNLVSEHDCPHLLFYGPSGAGKKTLIMALLKQIFGPGAEKVKVENKPWKIEAGTRTIDVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKEMAKSRPI-DVNGTKGFKVLVLNEVDKLSKEAQHSLRRTMEIYSGACRIILCCDSVSKVLEAVRSRCLNIRINSPSKEQIVDVLEYIAKKEGLQLPMGFTGRIAQQSNRNLRRAILCFEACKVQQYPFTDNQPAQTLDWEQYISEIASDI 264          
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: UPI0003D28DC8 (replication factor C subunit 3 isoform X3 n=3 Tax=Solanaceae TaxID=4070 RepID=UPI0003D28DC8)

HSP 1 Score: 249 bits (635), Expect = 4.070e-79
Identity = 127/249 (51.00%), Postives = 178/249 (71.49%), Query Frame = 1
Query:    1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744
            +H+ +   L+K+V+ GD P L+F+GPSG+GKKT ++ALLR+++G +A+KVKVE + +K    SR + VE++ LSS HHVEL P+DAG +D  +VQ I+KE A +  I D   K+GFK++VLNEVD+LS+ AQH+LRRTME  +A CRL+LCS+SS KV   +RSRCL VR+ AP E EI +VLE IAK+E  Q       +IV++S RNLR+A+L  E+ +  Q+PFT  Q      WE Y++ +A+DI
Sbjct:   17 VHQDVAQNLRKLVSEGDCPHLLFYGPSGSGKKTLIMALLRQIFGPSADKVKVENKIWKVDAGSRTIDVELTTLSSTHHVELNPSDAGFQDRYVVQEIIKEMAKNRPI-DTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCSNSSSKVTEAVRSRCLNVRINAPMEEEIVSVLEFIAKKEELQFPQGFAARIVEKSNRNLRRAVLTFESCRVQQYPFTNNQTIPPMDWEQYVSEIASDI 264          
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: A0A3Q7EC99_SOLLC (AAA domain-containing protein n=10 Tax=Solanaceae TaxID=4070 RepID=A0A3Q7EC99_SOLLC)

HSP 1 Score: 249 bits (636), Expect = 1.820e-78
Identity = 126/249 (50.60%), Postives = 178/249 (71.49%), Query Frame = 1
Query:    1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744
            +H+ +   L+K+V+ GD P L+F+GP G+GKKT ++ALLR+++G +A+KVKVE + +K    +R + VE++ LSS HHVEL P+DAG +D  +VQ I+KE A +  I D   K+GFK++VLNEVD+LS+ AQH+LRRTME  +A CRL+LCS+SS KV   +RSRCL VR+ AP E EI +VLE IAK+EG Q       +IV++S RNLR+A+L  E+ +  Q+PFT  Q      WE Y++ +A+DI
Sbjct:   17 VHQDVAQNLRKLVSEGDCPHLLFYGPPGSGKKTLIMALLRQIFGPSADKVKVENKIWKVDAGTRTIDVELTTLSSTHHVELNPSDAGFQDRYVVQEIIKEMAKNRPI-DTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCSNSSSKVTEAVRSRCLNVRINAPMEEEIVSVLEFIAKKEGLQFPQGFAARIVEKSNRNLRRAVLTFESCRVQQYPFTNNQTVPPMDWEQYVSEIASDI 264          
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: A0A1Y1HWC7_KLENI (Replication factor C subunit RFC3 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWC7_KLENI)

HSP 1 Score: 249 bits (635), Expect = 2.580e-78
Identity = 130/249 (52.21%), Postives = 179/249 (71.89%), Query Frame = 1
Query:    1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744
            +H +    LK +V+SGD P L+F+GPSGAGKKT ++ALLR++YGA AEKVKVE +++K    +R + +E++ +SS +H+ELTP+D G +D  +VQ ++KE A S  ++ V   +GFK++VLNEVD+LSK AQH+LRRTME  +A CRLVLC +S+ KVI  +RSRCL +RV  PS+ EI  VL  ++K+EG  +  +   +I   S RNLR+AIL LEA K  Q+PFT+ QQ QV  WE YI  +ANDI
Sbjct:   17 VHAQEAEHLKNLVSSGDCPHLLFYGPSGAGKKTLIMALLRDMYGAGAEKVKVENKAWKVEAGTRKIDLELTTVSSNYHIELTPSDVGFQDRYVVQEVIKEMAKSRPLT-VDGVKGFKVLVLNEVDKLSKEAQHSLRRTMEKYSAACRLVLCCNSASKVIEAVRSRCLPIRVNLPSQEEIIKVLHFVSKKEGLTLPSAFAGRIALASQRNLRRAILSLEACKVQQYPFTDNQQVQVMDWEAYITEIANDI 264          
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: A0A2J6M5I4_LACSA (AAA domain-containing protein n=6 Tax=Asteraceae TaxID=4210 RepID=A0A2J6M5I4_LACSA)

HSP 1 Score: 248 bits (634), Expect = 3.650e-78
Identity = 129/249 (51.81%), Postives = 176/249 (70.68%), Query Frame = 1
Query:    1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744
            +HE +   LKK+V   D P L+F+GPSG+GKKT ++ALLR+++GA+AEKVKVE +++K    SR + +E++ LSS HHVEL P+DAG +D  IVQ I+KE A +  I DV  K+GFK++VLNEVD+LS+ AQH+LRRTME  +A CRL+LC  SS KV   +RSRCL VR+ AP E +I  VLE I K+EG Q+      +I ++SGR+LR+AIL  E  +  Q+PFT  Q      WE+Y++ +A DI
Sbjct:   17 VHEDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGASAEKVKVENKTWKVDAGSRTIDLELTTLSSSHHVELNPSDAGFQDRYIVQEIIKEMAKNRPI-DVKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCDSSSKVTEAVRSRCLNVRISAPKEDQIVKVLEFIGKKEGLQLPPGFAARIAEKSGRSLRRAILSFETCRVQQYPFTNNQVIPPMDWEEYVSEIAADI 264          
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: A8J3U8_CHLRE (DNA replication factor C complex subunit 3 n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8J3U8_CHLRE)

HSP 1 Score: 248 bits (634), Expect = 3.880e-78
Identity = 128/249 (51.41%), Postives = 176/249 (70.68%), Query Frame = 1
Query:    1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744
            +H+ I   LKK+VA+GD P  +F+GP GAGKKT V+ALLR +YGA  EKV+VE + +K   PSR + VE++ LSS HH+EL PAD G+ D  +VQ I+KE A S  +      RGFK++VLNEVDRLSK AQ  LRRTME  ++ CRL++  S+  KV+ P+RSRCL VRV APS+A++  VL+ +AK+E   + ++   ++V  +GRNLR+A+LCLE  +A Q+PF + Q+PQ   WE YIA +A +I
Sbjct:   18 VHKDIADNLKKLVATGDFPHTLFYGPPGAGKKTLVMALLRAIYGAGVEKVRVETKPWKIDLPSRKLEVELTTLSSNHHLELNPADVGSNDRYVVQEIIKEMARSRPMG-ADGSRGFKVLVLNEVDRLSKEAQQGLRRTMEKYSSACRLIMVCSNVSKVMEPVRSRCLCVRVAAPSDAQVMEVLQGVAKKENLVLPEAFAARVVDYAGRNLRRALLCLEVCRAQQYPFGDSQEPQRADWELYIAEVAKNI 265          
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: I0Z9A3_COCSC (p-loop containing nucleoside triphosphate hydrolase protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z9A3_COCSC)

HSP 1 Score: 248 bits (633), Expect = 5.170e-78
Identity = 123/246 (50.00%), Postives = 178/246 (72.36%), Query Frame = 1
Query:    1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALA 735
            IH+ I   LKK+V +GD P L+F+GP GAGKKT ++ LLRE+YG A EK+KVE + +K   PSR + +E++ + S +HVEL P+D GN+D  +VQ ++K+   +  + ++  +RG+K+++LNEVDRLS+ AQH+LRRTME  +A CRL+   S+  KVI PLRSRCL VRVP P+ +EI  VL+ +A++E  Q+ D++ ++IVQ S RNLR+A+L LE  + +Q+PFTE Q  Q+P WE YI  +A
Sbjct:   17 IHQDIGESLKKLVTTGDCPHLLFYGPPGAGKKTLILGLLREIYGTAVEKIKVETKPWKIELPSRKLEIELTTVQSNYHVELNPSDVGNQDRYVVQEVIKDMCKNRPL-ELKGQRGYKVLLLNEVDRLSREAQHSLRRTMEKYSATCRLIFSCSNVSKVIDPLRSRCLCVRVPGPTGSEIQHVLQHVAQKENVQLPDALCQRIVQMSDRNLRRALLTLETCRVTQYPFTEAQSVQLPDWEMYIQEIA 261          
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: A0A072UA77_MEDTR (DNA replication factor C complex subunit 3 n=24 Tax=Fabaceae TaxID=3803 RepID=A0A072UA77_MEDTR)

HSP 1 Score: 248 bits (632), Expect = 7.320e-78
Identity = 128/249 (51.41%), Postives = 179/249 (71.89%), Query Frame = 1
Query:    1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744
            +H  I   LKK+V   D P L+F+GPSGAGKKT ++ALLR+++G  AEKVKVE R++K    SR + +E++ LSS +H+E+TP+DAG +D  IVQ I+KE A +  I D   K+GFK++VLN+VD+LS+ AQH+LRRTME  +A CRLVLC +SS +V   +RSRCL VR+ APSE +I  VL+ I K+EG Q+  S+  +I ++S RNLR+AIL  E  +  Q+PFT++Q      WE+YI+ +A+DI
Sbjct:   17 VHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPI-DTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSRCLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQYPFTDKQTIPPMDWEEYISEIASDI 264          
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: A9SKH1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SKH1_PHYPA)

HSP 1 Score: 248 bits (632), Expect = 7.320e-78
Identity = 127/249 (51.00%), Postives = 178/249 (71.49%), Query Frame = 1
Query:    1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744
            +H+     LK ++A GD P L+F+GPSGAGKKT ++ALLRE++G++AEKVKVE + +K    +R + VE++ +SS HHVEL P+DAG +D  +VQ I+K+ A +  + DV+  RGFK++VLNEVD+LSK AQH+LRRTME  +A CRL+LC +S+ KVI  +RSRC+ +R+ +PS  +I  VL  +AK+E   +   +  +I   S RNLR++ILCLEA KA Q+PFT  Q+ Q   WE +I  LANDI
Sbjct:   17 VHKEEATNLKNLIAQGDCPHLLFYGPSGAGKKTLIMALLREMFGSSAEKVKVENKPWKVEAGTRKIEVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKDMAKNRPL-DVAGNRGFKVLVLNEVDKLSKEAQHSLRRTMEKYSAACRLLLCCNSASKVIEAVRSRCVNIRINSPSRDDIVDVLMFVAKKENLILPPELAGRIAHHSNRNLRRSILCLEACKAKQYPFTADQEVQTTDWEQFIVGLANDI 264          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J4YEM1_9CHLO2.770e-8052.21Replication factor C subunit 3-like n=1 Tax=Trebou... [more]
D5ADN5_PICSI1.130e-7951.81AAA domain-containing protein n=1 Tax=Picea sitche... [more]
UPI0003D28DC84.070e-7951.00replication factor C subunit 3 isoform X3 n=3 Tax=... [more]
A0A3Q7EC99_SOLLC1.820e-7850.60AAA domain-containing protein n=10 Tax=Solanaceae ... [more]
A0A1Y1HWC7_KLENI2.580e-7852.21Replication factor C subunit RFC3 n=1 Tax=Klebsorm... [more]
A0A2J6M5I4_LACSA3.650e-7851.81AAA domain-containing protein n=6 Tax=Asteraceae T... [more]
A8J3U8_CHLRE3.880e-7851.41DNA replication factor C complex subunit 3 n=3 Tax... [more]
I0Z9A3_COCSC5.170e-7850.00p-loop containing nucleoside triphosphate hydrolas... [more]
A0A072UA77_MEDTR7.320e-7851.41DNA replication factor C complex subunit 3 n=24 Ta... [more]
A9SKH1_PHYPA7.320e-7851.00Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88912contigM-pyrifera_M_contig88912:6..813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score251.9
Seed ortholog evalue3.1e-64
Seed eggNOG ortholog4081.Solyc01g020440.2.1
KEGG koko:K10756
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031390,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0090304,GO:0090329,GO:1900262,GO:1900264,GO:1901360,GO:1901576,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.DNA polymerase III, delta subunit
EggNOG OGs37RVB@33090,3GBSA@35493,44H4G@71274,COG0470@1,KOG2035@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Exons2
Model size744
Cds size744
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816798.9590082-CDS-M-pyrifera_M_contig88912:5..1521622816798.9590082-CDS-M-pyrifera_M_contig88912:5..152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88912 6..152 +
1692278185.38339-CDS-M-pyrifera_M_contig88912:5..1521692278185.38339-CDS-M-pyrifera_M_contig88912:5..152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88912 6..152 +
1622816798.969634-CDS-M-pyrifera_M_contig88912:216..8131622816798.969634-CDS-M-pyrifera_M_contig88912:216..813Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88912 217..813 +
1692278185.4008656-CDS-M-pyrifera_M_contig88912:216..8131692278185.4008656-CDS-M-pyrifera_M_contig88912:216..813Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88912 217..813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88912.20625.1prot_M-pyrifera_M_contig88912.20625.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88912 6..813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88912.20625.1

>prot_M-pyrifera_M_contig88912.20625.1 ID=prot_M-pyrifera_M_contig88912.20625.1|Name=mRNA_M-pyrifera_M_contig88912.20625.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=248bp
IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKV
KVEQRSFKFTEPSRVTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEF
ATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLC
SSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEK
IVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI
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mRNA from alignment at M-pyrifera_M_contig88912:6..813+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88912.20625.1 ID=mRNA_M-pyrifera_M_contig88912.20625.1|Name=mRNA_M-pyrifera_M_contig88912.20625.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=808bp|location=Sequence derived from alignment at M-pyrifera_M_contig88912:6..813+ (Macrocystis pyrifera P11B4 male)
ATCCACGAAAGGATCAACGGGCGCCTCAAGAAGATGGTGGCCAGCGGCGA CTTGCCGCCCCTCATGTTCTTTGGGCCGTCCGGCGCCGGCAAGAAGACAC GTGTGATTGCCCTCTTGCGCGAGCTCTACGGTGCGGCAGCCGAGAAGGTG CGCTTACCCTCCACCCCTACACCACCGCGCTCCTGCGCACGAAGCGCTGA CGCCTACGCAGGTGAAGGTCGAGCAGCGGAGCTTCAAGTTCACAGAGCCG TCGCGAGTTACGGTGGAGATGAGTCTTCTCTCGTCTCTACACCACGTGGA GCTCACGCCGGCAGACGCGGGCAACAAGGACGTGCTCATCGTCCAGAGCA TTGTGAAGGAGTTCGCCACGAGCGCGCACATCTCGGACGTCTCGCAGAAG CGCGGCTTCAAGTTGATCGTGCTGAACGAGGTGGACCGCCTCTCGAAGCG CGCCCAGCACGCCCTCCGCCGCACGATGGAGACCAGCACCGCCGGCTGCC GCCTGGTGTTGTGCAGCTCTTCGAGCGGGAAGGTGATTGGGCCGCTGCGA TCTCGTTGCCTGCTCGTGCGCGTGCCGGCGCCCAGCGAGGCAGAGATCAC TGCGGTGCTTGAGCGCATTGCGAAGCGCGAGGGATTCCAGATGCTCGACT CCATGACGGAGAAGATCGTCCAGCGCTCTGGTAGAAACCTGCGCAAGGCC ATTCTGTGCCTCGAGGCGACAAAGGCCTCTCAGTTTCCCTTCACAGAGCG CCAGCAGCCGCAGGTGCCAGCCTGGGAGGACTACATTGCTGCCCTCGCCA ACGACATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88912:6..813+

>mRNA_M-pyrifera_M_contig88912.20625.1 ID=mRNA_M-pyrifera_M_contig88912.20625.1|Name=mRNA_M-pyrifera_M_contig88912.20625.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1488bp|location=Sequence derived from alignment at M-pyrifera_M_contig88912:6..813+ (Macrocystis pyrifera P11B4 male)
ATCCACGAAAGGATCAACGGGCGCCTCAAGAAGATGGTGGCCAGCGGCGA
CTTGCCGCCCCTCATGTTCTTTGGGCCGTCCGGCGCCGGCAAGAAGACAC
GTGTGATTGCCCTCTTGCGCGAGCTCTACGGTGCGGCAGCCGAGAAGATC
CACGAAAGGATCAACGGGCGCCTCAAGAAGATGGTGGCCAGCGGCGACTT
GCCGCCCCTCATGTTCTTTGGGCCGTCCGGCGCCGGCAAGAAGACACGTG
TGATTGCCCTCTTGCGCGAGCTCTACGGTGCGGCAGCCGAGAAGGTGAAG
GTCGAGCAGCGGAGCTTCAAGTTCACAGAGCCGTCGCGAGTTACGGTGGA
GATGAGTCTTCTCTCGTCTCTACACCACGTGGAGCTCACGCCGGCAGACG
CGGGCAACAAGGACGTGCTCATCGTCCAGAGCATTGTGAAGGAGTTCGCC
ACGAGCGCGCACATCTCGGACGTCTCGCAGAAGCGCGGCTTCAAGTTGAT
CGTGCTGAACGAGGTGGACCGCCTCTCGAAGCGCGCCCAGCACGCCCTCC
GCCGCACGATGGAGACCAGCACCGCCGGCTGCCGCCTGGTGTTGTGCAGC
TCTTCGAGCGGGAAGGTGATTGGGCCGCTGCGATCTCGTTGCCTGCTCGT
GCGCGTGCCGGCGCCCAGCGAGGCAGAGATCACTGCGGTGCTTGAGCGCA
TTGCGAAGCGCGAGGGATTCCAGATGCTCGACTCCATGACGGAGAAGATC
GTCCAGCGCTCTGGTAGAAACCTGCGCAAGGCCATTCTGTGCCTCGAGGC
GACAAAGGCCTCTCAGTTTCCCTTCACAGAGCGCCAGCAGCCGCAGGTGC
CAGCCTGGGAGGACTACATTGCTGCCCTCGCCAACGACATTGTGAAGGTC
GAGCAGCGGAGCTTCAAGTTCACAGAGCCGTCGCGAGTTACGGTGGAGAT
GAGTCTTCTCTCGTCTCTACACCACGTGGAGCTCACGCCGGCAGACGCGG
GCAACAAGGACGTGCTCATCGTCCAGAGCATTGTGAAGGAGTTCGCCACG
AGCGCGCACATCTCGGACGTCTCGCAGAAGCGCGGCTTCAAGTTGATCGT
GCTGAACGAGGTGGACCGCCTCTCGAAGCGCGCCCAGCACGCCCTCCGCC
GCACGATGGAGACCAGCACCGCCGGCTGCCGCCTGGTGTTGTGCAGCTCT
TCGAGCGGGAAGGTGATTGGGCCGCTGCGATCTCGTTGCCTGCTCGTGCG
CGTGCCGGCGCCCAGCGAGGCAGAGATCACTGCGGTGCTTGAGCGCATTG
CGAAGCGCGAGGGATTCCAGATGCTCGACTCCATGACGGAGAAGATCGTC
CAGCGCTCTGGTAGAAACCTGCGCAAGGCCATTCTGTGCCTCGAGGCGAC
AAAGGCCTCTCAGTTTCCCTTCACAGAGCGCCAGCAGCCGCAGGTGCCAG
CCTGGGAGGACTACATTGCTGCCCTCGCCAACGACATT
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