mRNA_M-pyrifera_M_contig88912.20625.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: A0A5J4YEM1_9CHLO (Replication factor C subunit 3-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YEM1_9CHLO) HSP 1 Score: 254 bits (649), Expect = 2.770e-80 Identity = 130/249 (52.21%), Postives = 176/249 (70.68%), Query Frame = 1 Query: 1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSRVT-VEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744 +H+ I L K+VASGD P +F+GP GAGKKT ++A LRE+YGA A+KVKVE R +K P+RV VE++L+SS HHVE+ P+D GN D +VQ I+K+ A S I+ QK GFK++VLNE DRLS +AQH+LRRTME +A CRLVLC ++ KVI P+RSRCL +RV AP+ E+ +L +A++EG Q+ D + ++I Q S RNLR+A+LC E +Q+PF + Q Q WE Y+ +ANDI Sbjct: 17 LHKDIGENLSKLVASGDCPHTLFYGPPGAGKKTLILAFLREVYGAGADKVKVETRPWKIQLPTRVLEVELTLVSSNHHVEMNPSDVGNNDRYVVQEILKDMAKSRPINMKGQK-GFKMLVLNETDRLSAQAQHSLRRTMEKYSASCRLVLCCNNVSKVIEPVRSRCLCIRVAAPTNPEVEDMLSHVAQKEGLQLPDRLRQRIAQTSERNLRRALLCFETCHMTQYPFKDDQAVQTTDWELYVQEIANDI 264
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: D5ADN5_PICSI (AAA domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5ADN5_PICSI) HSP 1 Score: 252 bits (644), Expect = 1.130e-79 Identity = 129/249 (51.81%), Postives = 177/249 (71.08%), Query Frame = 1 Query: 1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744 +H I LK +V+ D P L+F+GPSGAGKKT ++ALL++++G AEKVKVE + +K +R + VE++ +SS HHVEL P+DAG +D +VQ I+KE A S I DV+ +GFK++VLNEVD+LSK AQH+LRRTME + CR++LC S KV+ +RSRCL +R+ +PS+ +I VLE IAK+EG Q+ T +I Q+S RNLR+AILC EA K Q+PFT+ Q Q WE YI+ +A+DI Sbjct: 17 VHREIANNLKNLVSEHDCPHLLFYGPSGAGKKTLIMALLKQIFGPGAEKVKVENKPWKIEAGTRTIDVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKEMAKSRPI-DVNGTKGFKVLVLNEVDKLSKEAQHSLRRTMEIYSGACRIILCCDSVSKVLEAVRSRCLNIRINSPSKEQIVDVLEYIAKKEGLQLPMGFTGRIAQQSNRNLRRAILCFEACKVQQYPFTDNQPAQTLDWEQYISEIASDI 264
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: UPI0003D28DC8 (replication factor C subunit 3 isoform X3 n=3 Tax=Solanaceae TaxID=4070 RepID=UPI0003D28DC8) HSP 1 Score: 249 bits (635), Expect = 4.070e-79 Identity = 127/249 (51.00%), Postives = 178/249 (71.49%), Query Frame = 1 Query: 1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744 +H+ + L+K+V+ GD P L+F+GPSG+GKKT ++ALLR+++G +A+KVKVE + +K SR + VE++ LSS HHVEL P+DAG +D +VQ I+KE A + I D K+GFK++VLNEVD+LS+ AQH+LRRTME +A CRL+LCS+SS KV +RSRCL VR+ AP E EI +VLE IAK+E Q +IV++S RNLR+A+L E+ + Q+PFT Q WE Y++ +A+DI Sbjct: 17 VHQDVAQNLRKLVSEGDCPHLLFYGPSGSGKKTLIMALLRQIFGPSADKVKVENKIWKVDAGSRTIDVELTTLSSTHHVELNPSDAGFQDRYVVQEIIKEMAKNRPI-DTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCSNSSSKVTEAVRSRCLNVRINAPMEEEIVSVLEFIAKKEELQFPQGFAARIVEKSNRNLRRAVLTFESCRVQQYPFTNNQTIPPMDWEQYVSEIASDI 264
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: A0A3Q7EC99_SOLLC (AAA domain-containing protein n=10 Tax=Solanaceae TaxID=4070 RepID=A0A3Q7EC99_SOLLC) HSP 1 Score: 249 bits (636), Expect = 1.820e-78 Identity = 126/249 (50.60%), Postives = 178/249 (71.49%), Query Frame = 1 Query: 1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744 +H+ + L+K+V+ GD P L+F+GP G+GKKT ++ALLR+++G +A+KVKVE + +K +R + VE++ LSS HHVEL P+DAG +D +VQ I+KE A + I D K+GFK++VLNEVD+LS+ AQH+LRRTME +A CRL+LCS+SS KV +RSRCL VR+ AP E EI +VLE IAK+EG Q +IV++S RNLR+A+L E+ + Q+PFT Q WE Y++ +A+DI Sbjct: 17 VHQDVAQNLRKLVSEGDCPHLLFYGPPGSGKKTLIMALLRQIFGPSADKVKVENKIWKVDAGTRTIDVELTTLSSTHHVELNPSDAGFQDRYVVQEIIKEMAKNRPI-DTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCSNSSSKVTEAVRSRCLNVRINAPMEEEIVSVLEFIAKKEGLQFPQGFAARIVEKSNRNLRRAVLTFESCRVQQYPFTNNQTVPPMDWEQYVSEIASDI 264
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: A0A1Y1HWC7_KLENI (Replication factor C subunit RFC3 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWC7_KLENI) HSP 1 Score: 249 bits (635), Expect = 2.580e-78 Identity = 130/249 (52.21%), Postives = 179/249 (71.89%), Query Frame = 1 Query: 1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744 +H + LK +V+SGD P L+F+GPSGAGKKT ++ALLR++YGA AEKVKVE +++K +R + +E++ +SS +H+ELTP+D G +D +VQ ++KE A S ++ V +GFK++VLNEVD+LSK AQH+LRRTME +A CRLVLC +S+ KVI +RSRCL +RV PS+ EI VL ++K+EG + + +I S RNLR+AIL LEA K Q+PFT+ QQ QV WE YI +ANDI Sbjct: 17 VHAQEAEHLKNLVSSGDCPHLLFYGPSGAGKKTLIMALLRDMYGAGAEKVKVENKAWKVEAGTRKIDLELTTVSSNYHIELTPSDVGFQDRYVVQEVIKEMAKSRPLT-VDGVKGFKVLVLNEVDKLSKEAQHSLRRTMEKYSAACRLVLCCNSASKVIEAVRSRCLPIRVNLPSQEEIIKVLHFVSKKEGLTLPSAFAGRIALASQRNLRRAILSLEACKVQQYPFTDNQQVQVMDWEAYITEIANDI 264
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: A0A2J6M5I4_LACSA (AAA domain-containing protein n=6 Tax=Asteraceae TaxID=4210 RepID=A0A2J6M5I4_LACSA) HSP 1 Score: 248 bits (634), Expect = 3.650e-78 Identity = 129/249 (51.81%), Postives = 176/249 (70.68%), Query Frame = 1 Query: 1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744 +HE + LKK+V D P L+F+GPSG+GKKT ++ALLR+++GA+AEKVKVE +++K SR + +E++ LSS HHVEL P+DAG +D IVQ I+KE A + I DV K+GFK++VLNEVD+LS+ AQH+LRRTME +A CRL+LC SS KV +RSRCL VR+ AP E +I VLE I K+EG Q+ +I ++SGR+LR+AIL E + Q+PFT Q WE+Y++ +A DI Sbjct: 17 VHEDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGASAEKVKVENKTWKVDAGSRTIDLELTTLSSSHHVELNPSDAGFQDRYIVQEIIKEMAKNRPI-DVKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCDSSSKVTEAVRSRCLNVRISAPKEDQIVKVLEFIGKKEGLQLPPGFAARIAEKSGRSLRRAILSFETCRVQQYPFTNNQVIPPMDWEEYVSEIAADI 264
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: A8J3U8_CHLRE (DNA replication factor C complex subunit 3 n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8J3U8_CHLRE) HSP 1 Score: 248 bits (634), Expect = 3.880e-78 Identity = 128/249 (51.41%), Postives = 176/249 (70.68%), Query Frame = 1 Query: 1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744 +H+ I LKK+VA+GD P +F+GP GAGKKT V+ALLR +YGA EKV+VE + +K PSR + VE++ LSS HH+EL PAD G+ D +VQ I+KE A S + RGFK++VLNEVDRLSK AQ LRRTME ++ CRL++ S+ KV+ P+RSRCL VRV APS+A++ VL+ +AK+E + ++ ++V +GRNLR+A+LCLE +A Q+PF + Q+PQ WE YIA +A +I Sbjct: 18 VHKDIADNLKKLVATGDFPHTLFYGPPGAGKKTLVMALLRAIYGAGVEKVRVETKPWKIDLPSRKLEVELTTLSSNHHLELNPADVGSNDRYVVQEIIKEMARSRPMG-ADGSRGFKVLVLNEVDRLSKEAQQGLRRTMEKYSSACRLIMVCSNVSKVMEPVRSRCLCVRVAAPSDAQVMEVLQGVAKKENLVLPEAFAARVVDYAGRNLRRALLCLEVCRAQQYPFGDSQEPQRADWELYIAEVAKNI 265
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: I0Z9A3_COCSC (p-loop containing nucleoside triphosphate hydrolase protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z9A3_COCSC) HSP 1 Score: 248 bits (633), Expect = 5.170e-78 Identity = 123/246 (50.00%), Postives = 178/246 (72.36%), Query Frame = 1 Query: 1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALA 735 IH+ I LKK+V +GD P L+F+GP GAGKKT ++ LLRE+YG A EK+KVE + +K PSR + +E++ + S +HVEL P+D GN+D +VQ ++K+ + + ++ +RG+K+++LNEVDRLS+ AQH+LRRTME +A CRL+ S+ KVI PLRSRCL VRVP P+ +EI VL+ +A++E Q+ D++ ++IVQ S RNLR+A+L LE + +Q+PFTE Q Q+P WE YI +A Sbjct: 17 IHQDIGESLKKLVTTGDCPHLLFYGPPGAGKKTLILGLLREIYGTAVEKIKVETKPWKIELPSRKLEIELTTVQSNYHVELNPSDVGNQDRYVVQEVIKDMCKNRPL-ELKGQRGYKVLLLNEVDRLSREAQHSLRRTMEKYSATCRLIFSCSNVSKVIDPLRSRCLCVRVPGPTGSEIQHVLQHVAQKENVQLPDALCQRIVQMSDRNLRRALLTLETCRVTQYPFTEAQSVQLPDWEMYIQEIA 261
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: A0A072UA77_MEDTR (DNA replication factor C complex subunit 3 n=24 Tax=Fabaceae TaxID=3803 RepID=A0A072UA77_MEDTR) HSP 1 Score: 248 bits (632), Expect = 7.320e-78 Identity = 128/249 (51.41%), Postives = 179/249 (71.89%), Query Frame = 1 Query: 1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744 +H I LKK+V D P L+F+GPSGAGKKT ++ALLR+++G AEKVKVE R++K SR + +E++ LSS +H+E+TP+DAG +D IVQ I+KE A + I D K+GFK++VLN+VD+LS+ AQH+LRRTME +A CRLVLC +SS +V +RSRCL VR+ APSE +I VL+ I K+EG Q+ S+ +I ++S RNLR+AIL E + Q+PFT++Q WE+YI+ +A+DI Sbjct: 17 VHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPI-DTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSRCLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQYPFTDKQTIPPMDWEEYISEIASDI 264
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Match: A9SKH1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SKH1_PHYPA) HSP 1 Score: 248 bits (632), Expect = 7.320e-78 Identity = 127/249 (51.00%), Postives = 178/249 (71.49%), Query Frame = 1 Query: 1 IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVKVEQRSFKFTEPSR-VTVEMSLLSSLHHVELTPADAGNKDVLIVQSIVKEFATSAHISDVSQKRGFKLIVLNEVDRLSKRAQHALRRTMETSTAGCRLVLCSSSSGKVIGPLRSRCLLVRVPAPSEAEITAVLERIAKREGFQMLDSMTEKIVQRSGRNLRKAILCLEATKASQFPFTERQQPQVPAWEDYIAALANDI 744 +H+ LK ++A GD P L+F+GPSGAGKKT ++ALLRE++G++AEKVKVE + +K +R + VE++ +SS HHVEL P+DAG +D +VQ I+K+ A + + DV+ RGFK++VLNEVD+LSK AQH+LRRTME +A CRL+LC +S+ KVI +RSRC+ +R+ +PS +I VL +AK+E + + +I S RNLR++ILCLEA KA Q+PFT Q+ Q WE +I LANDI Sbjct: 17 VHKEEATNLKNLIAQGDCPHLLFYGPSGAGKKTLIMALLREMFGSSAEKVKVENKPWKVEAGTRKIEVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKDMAKNRPL-DVAGNRGFKVLVLNEVDKLSKEAQHSLRRTMEKYSAACRLLLCCNSASKVIEAVRSRCVNIRINSPSRDDIVDVLMFVAKKENLILPPELAGRIAHHSNRNLRRSILCLEACKAKQYPFTADQEVQTTDWEQFIVGLANDI 264 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88912.20625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig88912.20625.1 >prot_M-pyrifera_M_contig88912.20625.1 ID=prot_M-pyrifera_M_contig88912.20625.1|Name=mRNA_M-pyrifera_M_contig88912.20625.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=248bp IHERINGRLKKMVASGDLPPLMFFGPSGAGKKTRVIALLRELYGAAAEKVback to top mRNA from alignment at M-pyrifera_M_contig88912:6..813+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig88912.20625.1 ID=mRNA_M-pyrifera_M_contig88912.20625.1|Name=mRNA_M-pyrifera_M_contig88912.20625.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=808bp|location=Sequence derived from alignment at M-pyrifera_M_contig88912:6..813+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig88912:6..813+ >mRNA_M-pyrifera_M_contig88912.20625.1 ID=mRNA_M-pyrifera_M_contig88912.20625.1|Name=mRNA_M-pyrifera_M_contig88912.20625.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1488bp|location=Sequence derived from alignment at M-pyrifera_M_contig88912:6..813+ (Macrocystis pyrifera P11B4 male)back to top |