mRNA_M-pyrifera_M_contig88652.20589.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88652.20589.1
Unique NamemRNA_M-pyrifera_M_contig88652.20589.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88652.20589.1 vs. uniprot
Match: R1E1M2_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E1M2_EMIHU)

HSP 1 Score: 87.0 bits (214), Expect = 2.330e-17
Identity = 50/135 (37.04%), Postives = 70/135 (51.85%), Query Frame = 1
Query:    1 RGIRARFPNANPEVDKYPNGWNNQKTNWHPHTPAPPSTYIDIPFNTTYP---NGMFSDFRIGLGGACDRFERSESYWC--QPGGRTAGETFFVRTPSGLDFTPSQLPNVGRWDTHATTRAHWWRGGHWFTLMAEI 390
            R I AR+PNANPE+D++P G+    T W         ++I+     T+      +F D+R G+GG C  ++   SYWC  +P G  A E    + PSGL FTPSQLP+   +   +  R   WR GHW     E+
Sbjct:  196 RAIPARYPNANPELDRFPIGYIQSSTKWSAPAELGMPSFIEYNDTATFRPSYRSLFKDYRGGVGGQCSVYDPPFSYWCAQRPEGGGASE---FQLPSGLSFTPSQLPSAP-YKNVSGGRITAWRPGHWANWQFEL 326          
BLAST of mRNA_M-pyrifera_M_contig88652.20589.1 vs. uniprot
Match: A0A8B7D6L5_HYDVU (uncharacterized protein LOC101236102 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7D6L5_HYDVU)

HSP 1 Score: 74.7 bits (182), Expect = 4.590e-13
Identity = 48/134 (35.82%), Postives = 66/134 (49.25%), Query Frame = 1
Query:    1 RGIRARFPNANPEVD---KYPNGWNNQKTNWHPHTPAPPSTYIDIPFNT-TYPNGMFSDFRIGLGGACDRFERSESYWCQPGGRTAGETFFVRTPSGLDFTPSQLPNVGRWDTHATTRAHWWRGGHWFTLMAEI 390
            R ++ARFPNANPE+     +P G+ +Q  +W P  P   S+ IDI   +   PN  FS F +G+GG   +FE   SYW       AG  + V  PSGL +      N   W   +T   H + G HW   M ++
Sbjct:    7 RLVKARFPNANPEIQGLHTFPTGYIDQAASWLP--PKVASSPIDIKLQSPNRPNSYFSSFFVGIGGTVSQFEPPSSYWGSSS-PVAGSIYNV--PSGLRYYNDSEFNSRSWKNPSTGVVHAFHGDHWGNWMFKL 135          
BLAST of mRNA_M-pyrifera_M_contig88652.20589.1 vs. uniprot
Match: UPI001F5FA66E (uncharacterized protein LOC101236102 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=UPI001F5FA66E)

HSP 1 Score: 74.3 bits (181), Expect = 6.560e-13
Identity = 48/134 (35.82%), Postives = 65/134 (48.51%), Query Frame = 1
Query:    1 RGIRARFPNANPEVD---KYPNGWNNQKTNWHPHTPAPPSTYIDIPFNT-TYPNGMFSDFRIGLGGACDRFERSESYWCQPGGRTAGETFFVRTPSGLDFTPSQLPNVGRWDTHATTRAHWWRGGHWFTLMAEI 390
            R ++ARFPNANPE+     +P G+ +Q  +W P   A P   IDI   +   PN  FS F +G+GG   +FE   SYW       AG  + V  PSGL +      N   W   +T   H + G HW   M ++
Sbjct:  318 RLVKARFPNANPEIQGLHTFPTGYIDQAASWLPPKVASPP--IDIKLQSPNRPNSYFSSFFVGIGGTVSQFEPPSSYWGSSS-PVAGSIYNV--PSGLRYYNDSEFNSRSWKNPSTGVVHAFHGDHWGNWMFKL 446          
BLAST of mRNA_M-pyrifera_M_contig88652.20589.1 vs. uniprot
Match: X6LAJ9_RETFI (Zinc/iron permease (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LAJ9_RETFI)

HSP 1 Score: 67.8 bits (164), Expect = 5.220e-11
Identity = 47/144 (32.64%), Postives = 67/144 (46.53%), Query Frame = 1
Query:    1 RGIRARFPNANPEVDKYPNGWNNQKTNWHPHTPAPPSTYIDIP---FNTTYP--------NG---MFSDFRIGLGGACDRFERSESYWCQPGGRTAGETFFVRTPSGLDFTPSQLPNVGRWDTHATTRAHWWRGGHWFTLMAEI 390
            R IRAR+PNANPE++ +  G      +W      PP+  + +P   +N  YP        NG    F  + +G+GG CD F  S  YWC    +  G T +   P+GL +  + LP+   +          WR GHW + M EI
Sbjct:  108 RAIRARYPNANPEINGF--GSTLLAVSW-----VPPAMTVPLPLYEYNPDYPLRNDSTGTNGPSPYFWKYALGMGGICDNFTPSAGYWCSSVVQGGGATTY-NIPTGLVYNQTILPH-SPYANAVGGVIQAWRPGHWASWMFEI 242          
BLAST of mRNA_M-pyrifera_M_contig88652.20589.1 vs. uniprot
Match: A0A7S2DRA9_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DRA9_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 1.820e-6
Identity = 39/140 (27.86%), Postives = 64/140 (45.71%), Query Frame = 1
Query:   13 ARFPNANPEVDKYPNGWNNQKT------NWHPHTPAP---PSTYIDIPFNTTYPNGMFSDFRIGLGGACDRFERSESYWCQPGGRTAG----ETFFVRTPSGLDFTPSQLPNVGRWDTHAT-TRAHWWRGGHWFTLMAEI 390
            AR+PNANPE D++P G+   +T      +W P T +P   P+  +++     + +  F  +R G+ G C  +    S+WCQ    + G    ET+ +  PSGL      L N   +       +   WR  HW   + ++
Sbjct:   11 ARWPNANPETDRWPVGYRTSRTQYVPEGDWLPPTISPRPNPALTVEVASPNRHWDSYFGAYRGGINGTCSLYTPPFSFWCQSPPFSPGCGGCETWNI--PSGL--VARALANRTAYSARGRGAQLFAWRAAHWANWVFDV 146          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88652.20589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
R1E1M2_EMIHU2.330e-1737.04Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A8B7D6L5_HYDVU4.590e-1335.82uncharacterized protein LOC101236102 n=1 Tax=Hydra... [more]
UPI001F5FA66E6.560e-1335.82uncharacterized protein LOC101236102 n=1 Tax=Hydra... [more]
X6LAJ9_RETFI5.220e-1132.64Zinc/iron permease (Fragment) n=1 Tax=Reticulomyxa... [more]
A0A7S2DRA9_9EUKA1.820e-627.86Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88652contigM-pyrifera_M_contig88652:411..800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score91.7
Seed ortholog evalue2.8e-16
Seed eggNOG ortholog946362.XP_004993916.1
Hectar predicted targeting categoryother localisation
EggNOG OGs294VB@1,2RBSW@2759,39Y68@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.0508752-CDS-M-pyrifera_M_contig88652:410..8001622816797.0508752-CDS-M-pyrifera_M_contig88652:410..800Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88652 411..800 +
1692278184.1625571-CDS-M-pyrifera_M_contig88652:410..8001692278184.1625571-CDS-M-pyrifera_M_contig88652:410..800Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88652 411..800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88652.20589.1prot_M-pyrifera_M_contig88652.20589.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88652 411..800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88652.20589.1

>prot_M-pyrifera_M_contig88652.20589.1 ID=prot_M-pyrifera_M_contig88652.20589.1|Name=mRNA_M-pyrifera_M_contig88652.20589.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
RGIRARFPNANPEVDKYPNGWNNQKTNWHPHTPAPPSTYIDIPFNTTYPN
GMFSDFRIGLGGACDRFERSESYWCQPGGRTAGETFFVRTPSGLDFTPSQ
LPNVGRWDTHATTRAHWWRGGHWFTLMAEI
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mRNA from alignment at M-pyrifera_M_contig88652:411..800+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88652.20589.1 ID=mRNA_M-pyrifera_M_contig88652.20589.1|Name=mRNA_M-pyrifera_M_contig88652.20589.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig88652:411..800+ (Macrocystis pyrifera P11B4 male)
AGAGGCATTCGGGCGAGGTTTCCCAACGCAAACCCAGAAGTGGACAAGTA TCCGAACGGTTGGAACAACCAAAAAACCAACTGGCATCCTCACACTCCAG CACCGCCTTCAACCTACATCGACATCCCTTTCAACACCACCTACCCCAAT GGCATGTTTTCTGACTTTCGTATCGGGCTTGGAGGTGCTTGTGACCGCTT CGAGAGATCAGAGTCGTACTGGTGTCAACCTGGAGGCAGGACTGCTGGAG AAACCTTCTTCGTCCGCACTCCTTCTGGCCTCGATTTCACACCCTCCCAG CTCCCAAACGTAGGACGATGGGATACCCACGCCACTACCAGGGCGCACTG GTGGAGAGGGGGTCATTGGTTTACACTCATGGCAGAAATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88652:411..800+

>mRNA_M-pyrifera_M_contig88652.20589.1 ID=mRNA_M-pyrifera_M_contig88652.20589.1|Name=mRNA_M-pyrifera_M_contig88652.20589.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig88652:411..800+ (Macrocystis pyrifera P11B4 male)
AGAGGCATTCGGGCGAGGTTTCCCAACGCAAACCCAGAAGTGGACAAGTA
TCCGAACGGTTGGAACAACCAAAAAACCAACTGGCATCCTCACACTCCAG
CACCGCCTTCAACCTACATCGACATCCCTTTCAACACCACCTACCCCAAT
GGCATGTTTTCTGACTTTCGTATCGGGCTTGGAGGTGCTTGTGACCGCTT
CGAGAGATCAGAGTCGTACTGGTGTCAACCTGGAGGCAGGACTGCTGGAG
AAACCTTCTTCGTCCGCACTCCTTCTGGCCTCGATTTCACACCCTCCCAG
CTCCCAAACGTAGGACGATGGGATACCCACGCCACTACCAGGGCGCACTG
GTGGAGAGGGGGTCATTGGTTTACACTCATGGCAGAAATCAGAGGCATTC
GGGCGAGGTTTCCCAACGCAAACCCAGAAGTGGACAAGTATCCGAACGGT
TGGAACAACCAAAAAACCAACTGGCATCCTCACACTCCAGCACCGCCTTC
AACCTACATCGACATCCCTTTCAACACCACCTACCCCAATGGCATGTTTT
CTGACTTTCGTATCGGGCTTGGAGGTGCTTGTGACCGCTTCGAGAGATCA
GAGTCGTACTGGTGTCAACCTGGAGGCAGGACTGCTGGAGAAACCTTCTT
CGTCCGCACTCCTTCTGGCCTCGATTTCACACCCTCCCAGCTCCCAAACG
TAGGACGATGGGATACCCACGCCACTACCAGGGCGCACTGGTGGAGAGGG
GGTCATTGGTTTACACTCATGGCAGAAATC
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