mRNA_M-pyrifera_M_contig8818.20480.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8818.20480.1
Unique NamemRNA_M-pyrifera_M_contig8818.20480.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8818.20480.1 vs. uniprot
Match: D8LL68_ECTSI (Rab geranylgeranyl transferase component A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL68_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 2.630e-83
Identity = 149/268 (55.60%), Postives = 176/268 (65.67%), Query Frame = 1 
Query:    1 LSPVVLHQDFVSVEGTGGAVWRPSVQFAKFVCSEEGRRCLPLEGKSLLEVSSGLGLGAIVAWHLGASSVVATDIVSENGPMALLARNVSANCVRTASSTNRTEP---RQDRGLGEEKDKXXXXXXXXXXXXXXXXPWTAGRSSPPAGV--------------CVQELRWGDGAQLAGALAKFGGCGPDIVLACDVVFDEALLPALTETLVGACTLRTRCGELPRLCFSLQKRNRSRESLFFAGLARRLGGGS-WREVHREGDVSVLLF 750
            L PVVL+QDFVSVEGTGGAVWRPS++F++FVCSEEGRRCLPL GKS+LE+SSGLGLGAIV+W+LGAS VVATD+ S++GPM LLARNVS NC   A +T +  P    +D   G E                       GRS+   G                VQ LRWGD AQLA AL KF G GPD++LACDVVFD+ALLP L ETL  A    TR G  P LC S QKRNR RE  FFA LA+R+GGG  +R +H++ D+SV +F
Sbjct:   41 LPPVVLNQDFVSVEGTGGAVWRPSIEFSEFVCSEEGRRCLPLAGKSVLEISSGLGLGAIVSWNLGASPVVATDLGSKDGPMTLLARNVSENCGPRAVATPQPSPGRTSRDHSRGGEAGTS-----------------AKGRSAEDEGTPXXXXXXXXXXXXXSVQSLRWGDKAQLADALKKFDGFGPDVLLACDVVFDDALLPPLLETLAEAACRTTRGGGRPSLCVSHQKRNRRREDNFFASLAKRIGGGGQFRMLHQQNDLSVFVF 291
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BLAST of mRNA_M-pyrifera_M_contig8818.20480.1 vs. uniprot
Match: A0A835YQC3_9STRA (Rab geranylgeranyl transferase component A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQC3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.240e-17
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    7 PVVLHQDFVSVEGTGGAVWRPSVQFAKFVCSEEGRRCLPLEGKSLLEVSSGLGLGAIVAWHLGASSVVATDIVSE-NGPMALLARNVSANC 276
            P+ + QDF+ +EGTGG VWR SV  A++ C+        + G  +LE+ +GLGL AI AWHLGA  VVATDI  + N  +ALLA+N+SANC
Sbjct:   53 PLTIIQDFMGIEGTGGTVWRASVMLAEYCCTHLKDA---MAGAPVLEIGAGLGLVAIAAWHLGALQVVATDIDHDGNRLLALLAKNISANC 140
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8818.20480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL68_ECTSI2.630e-8355.60Rab geranylgeranyl transferase component A n=2 Tax... [more]
A0A835YQC3_9STRA1.240e-1751.65Rab geranylgeranyl transferase component A n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8818contigM-pyrifera_M_contig8818:4066..7247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog296587.XP_002500321.1
KEGG koko:K21803
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Exons4
Model size771
Cds size771
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8818.20480.1prot_M-pyrifera_M_contig8818.20480.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8818 4066..7247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.2163289-CDS-M-pyrifera_M_contig8818:4065..42721622816791.2163289-CDS-M-pyrifera_M_contig8818:4065..4272Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8818 4066..4272 +
1692278180.460033-CDS-M-pyrifera_M_contig8818:4065..42721692278180.460033-CDS-M-pyrifera_M_contig8818:4065..4272Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8818 4066..4272 +
1622816791.2303236-CDS-M-pyrifera_M_contig8818:4958..51511622816791.2303236-CDS-M-pyrifera_M_contig8818:4958..5151Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8818 4959..5151 +
1692278180.4717765-CDS-M-pyrifera_M_contig8818:4958..51511692278180.4717765-CDS-M-pyrifera_M_contig8818:4958..5151Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8818 4959..5151 +
1622816791.2437341-CDS-M-pyrifera_M_contig8818:5214..53381622816791.2437341-CDS-M-pyrifera_M_contig8818:5214..5338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8818 5215..5338 +
1692278180.4815857-CDS-M-pyrifera_M_contig8818:5214..53381692278180.4815857-CDS-M-pyrifera_M_contig8818:5214..5338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8818 5215..5338 +
1622816791.2551904-CDS-M-pyrifera_M_contig8818:7000..72471622816791.2551904-CDS-M-pyrifera_M_contig8818:7000..7247Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8818 7001..7247 +
1692278180.4911711-CDS-M-pyrifera_M_contig8818:7000..72471692278180.4911711-CDS-M-pyrifera_M_contig8818:7000..7247Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8818 7001..7247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8818.20480.1

>prot_M-pyrifera_M_contig8818.20480.1 ID=prot_M-pyrifera_M_contig8818.20480.1|Name=mRNA_M-pyrifera_M_contig8818.20480.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=257bp
LSPVVLHQDFVSVEGTGGAVWRPSVQFAKFVCSEEGRRCLPLEGKSLLEV
SSGLGLGAIVAWHLGASSVVATDIVSENGPMALLARNVSANCVRTASSTN
RTEPRQDRGLGEEKDKEEETEEEEEEDEEEEEPWTAGRSSPPAGVCVQEL
RWGDGAQLAGALAKFGGCGPDIVLACDVVFDEALLPALTETLVGACTLRT
RCGELPRLCFSLQKRNRSRESLFFAGLARRLGGGSWREVHREGDVSVLLF
AAAADQ*
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mRNA from alignment at M-pyrifera_M_contig8818:4066..7247+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8818.20480.1 ID=mRNA_M-pyrifera_M_contig8818.20480.1|Name=mRNA_M-pyrifera_M_contig8818.20480.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3182bp|location=Sequence derived from alignment at M-pyrifera_M_contig8818:4066..7247+ (Macrocystis pyrifera P11B4 male)
CTATCCCCAGTTGTGCTGCACCAAGACTTCGTAAGCGTGGAGGGGACGGG
GGGGGCGGTGTGGCGGCCCTCCGTCCAGTTCGCCAAATTCGTCTGCAGCG
AGGAGGGTCGACGATGTCTGCCCCTCGAGGGCAAGTCTCTGCTTGAGGTT
AGCTCTGGGCTAGGGCTTGGAGCCATCGTCGCCTGGCACCTGGGGGCGTC
GTCTGTGGTGAGTGTTGTTTTGGGATTTTCATTTATTATTCACGATTGAT
CCTTGTATTCGTACCAATGTCGAAATGACGTTTCAATTGAAATTTCAAGT
GACGTGTAGTGGGGAGTTCAGTCCCAAAGAGGTGATTTATACTTCAAGGC
GCAGAAGAGAGTTAGTTTCCCTTACGACTTTCTTTTCGTAGTTCGTGATA
ATTTTTTTTGAGTGATCAATGTTGAATCCTCATGCTAGATATGTATATAT
ATTGTCTGATGGCAAACACAATACCAGGGTACATGGTTTTGGTGATGGAC
AAGATGACTAGACTCTGGTATGGCAGTAGTGGTAGTAGTAATCGCGAACC
ATGACCAAAACAAAAGGTGACGTAAGTGTGAGACTCTTGTTCGCGAAGCG
TGGTGTTCTGTTTCACGGATCGAAGTCTTGACAAAAACTAGGACTTGTGG
AGGACAAAAAACCAAACGACAAACCTATTTATCTGGACGACGTACACCGA
ATATGACTACATCTGAATTTTGACACTGATCTTGAAATTTGAAAAATTGT
TTCGAACGTGTGAGATTGGTTTTGAATTTTCAAACCTGAAATTGGTCAAG
TAAATCCGAAATCGCCAAAACTTTCTTTGTGGGGCAATTTCTGCACCTCT
CTCCTGATCGGTGAAACCTTGTTTATTGTTTGTGTGCATGCAGGTGGCCA
CGGATATCGTCTCGGAAAATGGCCCGATGGCTCTCCTTGCCCGAAACGTT
TCCGCCAATTGCGTTCGCACTGCCTCATCGACAAATCGAACGGAGCCGCG
CCAGGACCGGGGATTGGGCGAGGAGAAGGACAAGGAGGAGGAAACAGAAG
AGGAGGAGGAGGAAGATGAGGAGGAGGAGGAACCGTGTTGCCGACCCACC
GCTGACGGCGATGCGGAGGCAGCAGAAGGCGTTCCGAGTCGAGGACAAGG
GACAGCTGGCCGTTCTTCTCCTCCTGCGGGTGTCTGCGTGCAGGAGCTGC
GGTGGGGGGACGGAGCTCAGCTGGCGGGGGCGCTGGCCAAGTTTGGAGGT
TGCGGGCCTGACATCGTGCTCGCGTAAGTCCAACCCCTCCTCCTCGCGTT
TAGGTATTGAGGCGTTCTACCATAGATGTTCACCCTAAATTTTCTGAGGT
TCCTCGCTTAAGGAGCTCCATGCCTCACCCGAAAACTGACTTCTGCAAAA
AATCAAATTGCATCCCGATGAATAATCCCATGGCCCAAGTATTCCTTTTT
CGTCATTTTTCGAAGCAAGATTGGCATTCCGACGATTTTGGGCTAAGGAG
CCCCGTCATTCAAAAACCATTTTAGCGGAAATGTGCTACCTCTATCGTAG
AACGCGTCTAATAGACGCCTGGGCTACTGGGGGAACGCTTCGCCACTTGT
TTTACCCACACCCAGGGTAAGCCTTGAAACAATGCACGGCACTGAGGTGT
ACATTAGTAGCACGGTACGGTTGTGTTAAGTGTGCCCCATGGCAGACCAA
ATCCGTTGATAACATGTATGTGGGACATCGGTATGGTGTTGCCCTGGCCT
GTCAAGATCCATGATCAAGAATACTGAATACTCTACTCTTACGTGTGTCA
CGGTGTCATACAGAAGATCCCTTCGTTGAGTAATTTATTAGGGGTGTTAT
CATGGTCTTGCCCTGGAAATCCTGTGAAGGTCCCAGGATTAAGAATACGA
AAAAGGTCGGTTGTGTCAGGGTGTCACACAGTAGACAATTTTCATTGTTT
TTTCATATATATATTGTTTCTCTTTTCTTTTTCTCTCTCGATTTGTCTTC
TTTGTTTTTGATTTTTTTTTTCTTTGTTTCGTTTTCGTTTCTCTCTATGA
TGTGTATGTCGTGCCTGTCGGATCCAGTATGATGACATGGCGTTGCATTG
CCCACTATGCTTACTGCATACGTGGCAACGTAGTATCTCTGTGGCGTAGC
TTTGTGACCCCTGAACTTGTGTCTCTTCTAGGATTATAAGAATCGGCACG
GACACTGGTTGTGCTGGATGTCGACGGGTAGAAAGAACGGTTTAATGTGA
AGAACACACACACAGTAGACAATTTTCGTTGGGTCATTTGTGTGGATCAA
TAGTACGTTTTTTTGGCCTGGAAGGGGCTGTCAAGGCCCCGGATTTAGGA
CACGGGAAAGGCGGTAATATACACCACTACAGTAGCGTTGTGCAATTCCC
GCTAGGGTTGTGGTACTTCCCTGGAGAAGACCTCTTACGAACCGAGACTA
GGAGTTGTGGGCAAGGCAAACCCTCAGGGAGATAGATCAAAAGGTGCCCG
GCTTCCCTTTTTCTCGACGAAAAAAGAAGGCGTATAACTACTCAAGAACT
GCCTGATACTTTTTTGTGTATGCTTTATTTGATCTCCACCAATACTCAGC
TCAAATCCCGATCCCTCATAGCCAGTAGGCCGAGGAAAGTTACTTCTCTC
TCCTGATTATCGGTGTGTGCCGACGTTCATACCCGCCTCTTTTGCTTGTT
TTTCGTCCCTGTCACCTTTTGCCCGACTTGACTGCCGAACTGTACTACTC
CAATACTTCGTGCTGTAATCATAATTGCCTGTCCGGACTGTCCCGCTGCG
TGTTCCGACGCCCGACGCTTGCCTTCGCTATTGCGCTTGTCTTTCTTTCT
TCTTCTTTTTTTCCCTTATTGTTTTGTCCCCTTTTCCCCGACTCGAATCC
CGTATTCTCATCATATCGACGAAAACAACGTACAGGTGTGACGTGGTTTT
CGACGAGGCACTGCTCCCGGCCTTAACCGAAACTTTAGTAGGAGCGTGCA
CGCTGCGGACGAGATGTGGAGAGCTCCCTCGCCTTTGCTTCTCGCTCCAG
AAACGGAACCGAAGCCGGGAAAGCTTGTTCTTCGCTGGACTGGCGAGGCG
ACTGGGCGGAGGGTCGTGGCGGGAGGTCCACCGAGAGGGTGATGTCTCCG
TACTTCTCTTCGCAGCAGCGGCGGACCAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8818:4066..7247+

>mRNA_M-pyrifera_M_contig8818.20480.1 ID=mRNA_M-pyrifera_M_contig8818.20480.1|Name=mRNA_M-pyrifera_M_contig8818.20480.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1542bp|location=Sequence derived from alignment at M-pyrifera_M_contig8818:4066..7247+ (Macrocystis pyrifera P11B4 male)
CTATCCCCAGTTGTGCTGCACCAAGACTTCGTAAGCGTGGAGGGGACGGG
GGGGGCGGTGTGGCGGCCCTCCGTCCAGTTCGCCAAATTCGTCTGCAGCG
AGGAGGGTCGACGATGTCTGCCCCTCGAGGGCAAGTCTCTGCTTGAGGTT
AGCTCTGGGCTAGGGCTTGGAGCCATCGTCGCCTGGCACCTGGGGGCGTC
GTCTGTGCTATCCCCAGTTGTGCTGCACCAAGACTTCGTAAGCGTGGAGG
GGACGGGGGGGGCGGTGTGGCGGCCCTCCGTCCAGTTCGCCAAATTCGTC
TGCAGCGAGGAGGGTCGACGATGTCTGCCCCTCGAGGGCAAGTCTCTGCT
TGAGGTTAGCTCTGGGCTAGGGCTTGGAGCCATCGTCGCCTGGCACCTGG
GGGCGTCGTCTGTGGTGGCCACGGATATCGTCTCGGAAAATGGCCCGATG
GCTCTCCTTGCCCGAAACGTTTCCGCCAATTGCGTTCGCACTGCCTCATC
GACAAATCGAACGGAGCCGCGCCAGGACCGGGGATTGGGCGAGGAGAAGG
ACAAGGAGGAGGAAACAGAAGAGGAGGAGGAGGAAGATGAGGAGGAGGAG
GAACCGTGTGGCCACGGATATCGTCTCGGAAAATGGCCCGATGGCTCTCC
TTGCCCGAAACGTTTCCGCCAATTGCGTTCGCACTGCCTCATCGACAAAT
CGAACGGAGCCGCGCCAGGACCGGGGATTGGGCGAGGAGAAGGACAAGGA
GGAGGAAACAGAAGAGGAGGAGGAGGAAGATGAGGAGGAGGAGGAACCGT
GGACAGCTGGCCGTTCTTCTCCTCCTGCGGGTGTCTGCGTGCAGGAGCTG
CGGTGGGGGGACGGAGCTCAGCTGGCGGGGGCGCTGGCCAAGTTTGGAGG
TTGCGGGCCTGACATCGTGCTCGCGGACAGCTGGCCGTTCTTCTCCTCCT
GCGGGTGTCTGCGTGCAGGAGCTGCGGTGGGGGGACGGAGCTCAGCTGGC
GGGGGCGCTGGCCAAGTTTGGAGGTTGCGGGCCTGACATCGTGCTCGCGT
GTGACGTGGTTTTCGACGAGGCACTGCTCCCGGCCTTAACCGAAACTTTA
GTAGGAGCGTGCACGCTGCGGACGAGATGTGGAGAGCTCCCTCGCCTTTG
CTTCTCGCTCCAGAAACGGAACCGAAGCCGGGAAAGCTTGTTCTTCGCTG
GACTGGCGAGGCGACTGGGCGGAGGGTCGTGGCGGGAGGTCCACCGAGAG
GGTGATGTCTCCGTACTTCTCTTCGCAGCAGCGGCGGACCAGTAGGTGTG
ACGTGGTTTTCGACGAGGCACTGCTCCCGGCCTTAACCGAAACTTTAGTA
GGAGCGTGCACGCTGCGGACGAGATGTGGAGAGCTCCCTCGCCTTTGCTT
CTCGCTCCAGAAACGGAACCGAAGCCGGGAAAGCTTGTTCTTCGCTGGAC
TGGCGAGGCGACTGGGCGGAGGGTCGTGGCGGGAGGTCCACCGAGAGGGT
GATGTCTCCGTACTTCTCTTCGCAGCAGCGGCGGACCAGTAG
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