mRNA_M-pyrifera_M_contig88030.20451.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88030.20451.1
Unique NamemRNA_M-pyrifera_M_contig88030.20451.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88030.20451.1 vs. uniprot
Match: A0A7Y5W796_9BACT (Uncharacterized protein n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5W796_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 1.040e-9
Identity = 41/111 (36.94%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:   64 VAVICLTLLSAITISLVRLSVVTQQQTERDQWRLQSAWLAESGLLRAAAQLDAGDDIATEDW-TPTGIGPSSQTGRVAITVTPDPDDETHLTITATADFPDHPTDRVRTTR 393
            + ++ L +  A+ +S+VRL+   +Q      W+ Q+AWLAESGL RAAA+L        E W  P  +     +G+V I V    D      I   AD+PD P DR R TR
Sbjct:    2 IVLVALLVAFAVLVSIVRLAAAERQAWRTQTWQTQAAWLAESGLERAAARLHDDPKYQGETWIVPAEVFGGRWSGKVTIQVATLADQPAQRQIRVQADYPDDPQDRARRTR 112
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BLAST of mRNA_M-pyrifera_M_contig88030.20451.1 vs. uniprot
Match: A0A517VNY3_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VNY3_9PLAN)

HSP 1 Score: 52.8 bits (125), Expect = 6.760e-6
Identity = 43/133 (32.33%), Postives = 65/133 (48.87%), Query Frame = 1 
Query:    1 RLRLSTTRPRPTRHRSGAAMIVAVICLTLLSAITISLVRLSVVTQQQTERDQWRLQSAWLAESGLLRAAAQLDAGDDIATEDWT--PTGIGPSSQTGRVAITVTPDPDDETHLTITATADFPDHPTDRVRTTR 393
            R  +S  R     +R G+  ++ +ICL L   I   L++ S    +Q +++Q+RLQS WLA++   RA  +L+   D   E W+  P  IG     G V I +         +TI  TA +P   T+RVR  R
Sbjct:   10 RSNISEKRQGGKTNRGGSVALIPMICLILSLTIIGELLKQSSTEIKQLKKEQYRLQSIWLADAAAQRAITKLNNQTDYDGEMWSLSPEDIG-GEFPGEVLIEIDRSIQKNNSITIRTTASYPAKSTERVRVIR 141
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88030.20451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7Y5W796_9BACT1.040e-936.94Uncharacterized protein n=1 Tax=Pirellulales bacte... [more]
A0A517VNY3_9PLAN6.760e-632.33Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88030contigM-pyrifera_M_contig88030:248..661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.9431298-CDS-M-pyrifera_M_contig88030:247..6611622816789.9431298-CDS-M-pyrifera_M_contig88030:247..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88030 248..661 +
1692278179.7977455-CDS-M-pyrifera_M_contig88030:247..6611692278179.7977455-CDS-M-pyrifera_M_contig88030:247..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88030 248..661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88030.20451.1prot_M-pyrifera_M_contig88030.20451.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88030 248..661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88030.20451.1

>prot_M-pyrifera_M_contig88030.20451.1 ID=prot_M-pyrifera_M_contig88030.20451.1|Name=mRNA_M-pyrifera_M_contig88030.20451.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
RLRLSTTRPRPTRHRSGAAMIVAVICLTLLSAITISLVRLSVVTQQQTER
DQWRLQSAWLAESGLLRAAAQLDAGDDIATEDWTPTGIGPSSQTGRVAIT
VTPDPDDETHLTITATADFPDHPTDRVRTTRARTITRT
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mRNA from alignment at M-pyrifera_M_contig88030:248..661+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88030.20451.1 ID=mRNA_M-pyrifera_M_contig88030.20451.1|Name=mRNA_M-pyrifera_M_contig88030.20451.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig88030:248..661+ (Macrocystis pyrifera P11B4 male)
CGTTTGCGGCTGAGCACGACCCGTCCGCGTCCAACACGCCATCGCTCTGG
CGCGGCGATGATCGTCGCGGTGATCTGCTTGACTCTCCTGTCTGCAATCA
CCATCTCCCTCGTCCGGCTGTCAGTGGTCACTCAGCAACAGACCGAACGC
GATCAGTGGCGACTCCAGTCTGCGTGGCTGGCCGAGTCGGGTCTTCTGCG
AGCCGCAGCACAACTCGACGCGGGAGACGACATTGCCACAGAAGACTGGA
CCCCAACCGGAATTGGACCCTCCTCACAAACTGGACGTGTGGCCATCACG
GTCACGCCCGATCCTGACGACGAGACTCATCTAACGATCACGGCGACAGC
CGACTTTCCCGATCATCCCACCGACCGCGTTCGCACAACGCGTGCCCGCA
CGATCACCCGCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88030:248..661+

>mRNA_M-pyrifera_M_contig88030.20451.1 ID=mRNA_M-pyrifera_M_contig88030.20451.1|Name=mRNA_M-pyrifera_M_contig88030.20451.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig88030:248..661+ (Macrocystis pyrifera P11B4 male)
CGTTTGCGGCTGAGCACGACCCGTCCGCGTCCAACACGCCATCGCTCTGG
CGCGGCGATGATCGTCGCGGTGATCTGCTTGACTCTCCTGTCTGCAATCA
CCATCTCCCTCGTCCGGCTGTCAGTGGTCACTCAGCAACAGACCGAACGC
GATCAGTGGCGACTCCAGTCTGCGTGGCTGGCCGAGTCGGGTCTTCTGCG
AGCCGCAGCACAACTCGACGCGGGAGACGACATTGCCACAGAAGACTGGA
CCCCAACCGGAATTGGACCCTCCTCACAAACTGGACGTGTGGCCATCACG
GTCACGCCCGATCCTGACGACGAGACTCATCTAACGATCACGGCGACAGC
CGACTTTCCCGATCATCCCACCGACCGCGTTCGCACAACGCGTGCCCGCA
CGATCACCCGCACCCGTTTGCGGCTGAGCACGACCCGTCCGCGTCCAACA
CGCCATCGCTCTGGCGCGGCGATGATCGTCGCGGTGATCTGCTTGACTCT
CCTGTCTGCAATCACCATCTCCCTCGTCCGGCTGTCAGTGGTCACTCAGC
AACAGACCGAACGCGATCAGTGGCGACTCCAGTCTGCGTGGCTGGCCGAG
TCGGGTCTTCTGCGAGCCGCAGCACAACTCGACGCGGGAGACGACATTGC
CACAGAAGACTGGACCCCAACCGGAATTGGACCCTCCTCACAAACTGGAC
GTGTGGCCATCACGGTCACGCCCGATCCTGACGACGAGACTCATCTAACG
ATCACGGCGACAGCCGACTTTCCCGATCATCCCACCGACCGCGTTCGCAC
AACGCGTGCCCGCACGATCACCCGCACC
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