mRNA_M-pyrifera_M_contig8785.20411.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8785.20411.1
Unique NamemRNA_M-pyrifera_M_contig8785.20411.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8785.20411.1 vs. uniprot
Match: D7G4G6_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G6_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.300e-30
Identity = 114/303 (37.62%), Postives = 135/303 (44.55%), Query Frame = 1 
Query:    1 RQAVGIPQGSVLSGLLCN-FFFGYIEKRLLGDILDSPPLSAP--PPTSSVKRDVPV----MNRFNDSLE--TSSNGDGVRPCY--------GRDAETSA------------------------ARFSGGCSRSSPWGVGESGLGTGARAAAGAESDCTSRLPGKTCGTAEAISDVSHGEGGAYSSACRSQREHPCEASS----------------------GETCGRRRTREDEDGGAS------GGGRPPFPHPEGDCTLLRQVDDFLLVTTSKEKAMAFVSAMHDKAKTGEWGFSVHEAKV 702
            +QAVGIPQGSVLSGLLCN FFFG+IEKRLLGD+LD      P  PP     R +      + R +D +   + S G+G    +        GR  E                           AR S  CSR          LG     AA  +SD  SR           +  V +G GG  S   R   E P + S                       GE C      +DE  G         GG  PFP PEGDCTLLRQVDDFLL++TSK KA +FV  MHD+ KTG+WGFSVH+AK 
Sbjct:   26 QQAVGIPQGSVLSGLLCNYFFFGHIEKRLLGDVLDGGVPERPHRPPGGGGARGLSARAVGLERRSDGIGGGSGSQGEGATSSFAPPAGGKRGRPGERXXXXXXXXXXXXXXXXXXXGERPPKFARISPACSR----------LGD----AAAPDSDRASR---------GGVLGVPNGRGGGGSDGNRGPHETPQQQSCRNTANQNGRGHGSYGPVGGPHRGERCRLGGNGDDEQRGRGPAEREESGGESPFPDPEGDCTLLRQVDDFLLISTSKAKAESFVRVMHDEVKTGDWGFSVHQAKT 305
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BLAST of mRNA_M-pyrifera_M_contig8785.20411.1 vs. uniprot
Match: D7FKS8_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKS8_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 5.720e-30
Identity = 115/311 (36.98%), Postives = 136/311 (43.73%), Query Frame = 1 
Query:    1 RQAVGIPQGSVLSGLLCN-FFFGYIEKRLLGDILDSPPLSAP--PPTSSVKRDVPV----MNRFNDSLE--TSSNGDGVRPCY--------GRDAETSA--------------------------ARFSGGCSRSSPWGVGESGLGTGARAAAGAESDCTSRLPGKTCGTAEAISDVSHGEGGAYSSACRSQREHPCEASS----------------------GETCGRRRTREDEDGGAS------GGGRPPFPHPEGDCTLLRQVDDFLL-----VTTSKEKAMAFVSAMHDKAKTGEWGFSVHEAKVS 705
            +QAVGIPQGSVLSGLLCN FFFG+IEKRLLGD+LD      P  PP     R +      + R +D +   + S G G    +        GR  E                             AR S  CSR          LG     AA  +SD  SR           +  V +G GG  S   R   E P + S                       GE C      +DE  G         GG  PFP PEGDCTLLRQVDDFLL     ++TSK KA +FV  MHD+ KTG+WGFSVH+AKV+
Sbjct:   26 QQAVGIPQGSVLSGLLCNYFFFGHIEKRLLGDVLDGGVPERPHRPPGGGGARGLSARAVGLERRSDGIGGGSGSQGAGATSSFAPPAGGKRGRPGERXXXXXXXXXXXXXXXXXXXXXGERPPKFARISPACSR----------LGD----AAAPDSDRASR---------GGVLGVPNGRGGGGSDGNRGPHETPQQQSCRNTANQNGRGHGSYGPVGGPHRGERCRLGGNGDDEQRGRGPAEREESGGESPFPDPEGDCTLLRQVDDFLLESDDGISTSKAKAESFVRVMHDEVKTGDWGFSVHQAKVT 313
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BLAST of mRNA_M-pyrifera_M_contig8785.20411.1 vs. uniprot
Match: A0A6H5K5W1_9PHAE (Telomerase reverse transcriptase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W1_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 4.550e-27
Identity = 106/306 (34.64%), Postives = 127/306 (41.50%), Query Frame = 1 
Query:    1 RQAVGIPQGSVLSGLLCNFFFGYIEKRLLGDILDSPPLSAP--PPTSSVKRDVPVMNRFNDSLETSSNGDGVRPCYGRDAETSAARFSGGCSRSSPWGVGESGLGTGARAAAGAESD-----------------------------------------CTS--RLPGKTCGTAEAISDVSHGEGGAYSSACRSQREHPCEASSGETC---GRRRTREDEDGGASGGGR------------------------PPFPHPEGDCTLLRQVDDFLLVTTSKEKAMAFVSAMHDKAKTGEWGFSVHEAKV 702
            +QAVGIPQGSVLSGLLCN+FFG+IEKRLLGD+LD      P  PP     R +        ++   S  DG+    G   E +A+ F               G  TG + A   E +                                         C S    P     +   +  V  G  G  S   R   E P + S   T    GR        GGA GG R                         PFP PEGDCTLLRQVDDFLL++TSK KA +FV  MHD+ KTG+WGFSVH+AK 
Sbjct:  103 QQAVGIPQGSVLSGLLCNYFFGHIEKRLLGDVLDGGVPERPHLPPGGGGARGLSSR-----AVGLESRSDGIGAGSGGQDEGAASSF---------------GPPTGGKRARPGERERXXXXXPVTXXXXXXXXXXXXXXXXXGERPPKFARISPSCSCLSDAAAPDSDRASRGGVLGVPTGRDGGGSDGNRGPHETPQQQSRRNTANQNGRGHGSYGPVGGARGGERCRLGGDVDDGQRGRSPVEEESGEERPFPDPEGDCTLLRQVDDFLLISTSKAKAESFVRVMHDEVKTGDWGFSVHQAKT 388
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8785.20411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4G6_ECTSI1.300e-3037.62Telomerase reverse transcriptase n=1 Tax=Ectocarpu... [more]
D7FKS8_ECTSI5.720e-3036.98Telomerase reverse transcriptase n=1 Tax=Ectocarpu... [more]
A0A6H5K5W1_9PHAE4.550e-2734.64Telomerase reverse transcriptase n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8785contigM-pyrifera_M_contig8785:10490..11194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue2.3e-29
Seed eggNOG ortholog2880.D7G4G6
Preferred nameTERT
KEGG koko:K10626,ko:K11126
KEGG Pathwayko05165,ko05166,ko05200,ko05225,ko05226,map05165,map05166,map05200,map05225,map05226
Hectar predicted targeting categoryother localisation
GOsGO:0000723,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010833,GO:0016043,GO:0018130,GO:0019438,GO:0032200,GO:0034641,GO:0034645,GO:0034654,GO:0042592,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0051276,GO:0060249,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.telomerase RNA reverse transcriptase activity
EggNOG OGsKOG1005@1,KOG1005@2759
EC2.3.2.27,2.7.7.49
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko04121
Exons1
Model size705
Cds size705
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.975459-CDS-M-pyrifera_M_contig8785:10489..111941622816787.975459-CDS-M-pyrifera_M_contig8785:10489..11194Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8785 10490..11194 -
1692278178.732551-CDS-M-pyrifera_M_contig8785:10489..111941692278178.732551-CDS-M-pyrifera_M_contig8785:10489..11194Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8785 10490..11194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8785.20411.1prot_M-pyrifera_M_contig8785.20411.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8785 10490..11194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8785.20411.1

>prot_M-pyrifera_M_contig8785.20411.1 ID=prot_M-pyrifera_M_contig8785.20411.1|Name=mRNA_M-pyrifera_M_contig8785.20411.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=235bp
RQAVGIPQGSVLSGLLCNFFFGYIEKRLLGDILDSPPLSAPPPTSSVKRD
VPVMNRFNDSLETSSNGDGVRPCYGRDAETSAARFSGGCSRSSPWGVGES
GLGTGARAAAGAESDCTSRLPGKTCGTAEAISDVSHGEGGAYSSACRSQR
EHPCEASSGETCGRRRTREDEDGGASGGGRPPFPHPEGDCTLLRQVDDFL
LVTTSKEKAMAFVSAMHDKAKTGEWGFSVHEAKVS
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mRNA from alignment at M-pyrifera_M_contig8785:10490..11194-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8785.20411.1 ID=mRNA_M-pyrifera_M_contig8785.20411.1|Name=mRNA_M-pyrifera_M_contig8785.20411.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=705bp|location=Sequence derived from alignment at M-pyrifera_M_contig8785:10490..11194- (Macrocystis pyrifera P11B4 male)
CGTCAGGCGGTGGGCATCCCGCAAGGATCGGTGCTATCGGGCCTCCTCTG
CAATTTCTTCTTCGGCTACATAGAGAAACGCCTTCTCGGGGATATCCTCG
ATTCTCCCCCCCTCTCCGCTCCGCCCCCCACCTCAAGCGTAAAGCGAGAT
GTACCAGTGATGAATCGTTTCAACGACAGCCTTGAAACTAGTTCGAATGG
AGATGGCGTACGCCCCTGCTATGGGCGCGATGCCGAGACGTCTGCGGCTC
GCTTCAGTGGTGGCTGCTCCCGGTCTTCCCCCTGGGGGGTCGGTGAGAGT
GGGCTCGGGACGGGAGCGAGAGCGGCAGCAGGCGCGGAATCGGACTGCAC
GAGTCGGTTGCCGGGGAAAACTTGTGGAACCGCGGAGGCGATCAGCGATG
TCAGCCATGGCGAGGGGGGTGCGTACTCCAGCGCCTGTCGAAGCCAAAGA
GAACACCCCTGTGAAGCTAGCAGCGGCGAGACATGTGGTAGGAGGCGCAC
GCGTGAAGATGAGGACGGGGGGGCTTCGGGGGGGGGAAGGCCTCCGTTCC
CCCATCCCGAGGGTGACTGCACGTTGCTGCGGCAGGTGGACGACTTCCTC
CTAGTGACGACGAGCAAGGAAAAGGCGATGGCGTTTGTTTCGGCGATGCA
CGACAAGGCCAAGACGGGGGAATGGGGTTTCAGCGTACACGAGGCGAAGG
TGAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8785:10490..11194-

>mRNA_M-pyrifera_M_contig8785.20411.1 ID=mRNA_M-pyrifera_M_contig8785.20411.1|Name=mRNA_M-pyrifera_M_contig8785.20411.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1410bp|location=Sequence derived from alignment at M-pyrifera_M_contig8785:10490..11194- (Macrocystis pyrifera P11B4 male)
CGTCAGGCGGTGGGCATCCCGCAAGGATCGGTGCTATCGGGCCTCCTCTG
CAATTTCTTCTTCGGCTACATAGAGAAACGCCTTCTCGGGGATATCCTCG
ATTCTCCCCCCCTCTCCGCTCCGCCCCCCACCTCAAGCGTAAAGCGAGAT
GTACCAGTGATGAATCGTTTCAACGACAGCCTTGAAACTAGTTCGAATGG
AGATGGCGTACGCCCCTGCTATGGGCGCGATGCCGAGACGTCTGCGGCTC
GCTTCAGTGGTGGCTGCTCCCGGTCTTCCCCCTGGGGGGTCGGTGAGAGT
GGGCTCGGGACGGGAGCGAGAGCGGCAGCAGGCGCGGAATCGGACTGCAC
GAGTCGGTTGCCGGGGAAAACTTGTGGAACCGCGGAGGCGATCAGCGATG
TCAGCCATGGCGAGGGGGGTGCGTACTCCAGCGCCTGTCGAAGCCAAAGA
GAACACCCCTGTGAAGCTAGCAGCGGCGAGACATGTGGTAGGAGGCGCAC
GCGTGAAGATGAGGACGGGGGGGCTTCGGGGGGGGGAAGGCCTCCGTTCC
CCCATCCCGAGGGTGACTGCACGTTGCTGCGGCAGGTGGACGACTTCCTC
CTAGTGACGACGAGCAAGGAAAAGGCGATGGCGTTTGTTTCGGCGATGCA
CGACAAGGCCAAGACGGGGGAATGGGGTTTCAGCGTACACGAGGCGAAGG
TGAGCCGTCAGGCGGTGGGCATCCCGCAAGGATCGGTGCTATCGGGCCTC
CTCTGCAATTTCTTCTTCGGCTACATAGAGAAACGCCTTCTCGGGGATAT
CCTCGATTCTCCCCCCCTCTCCGCTCCGCCCCCCACCTCAAGCGTAAAGC
GAGATGTACCAGTGATGAATCGTTTCAACGACAGCCTTGAAACTAGTTCG
AATGGAGATGGCGTACGCCCCTGCTATGGGCGCGATGCCGAGACGTCTGC
GGCTCGCTTCAGTGGTGGCTGCTCCCGGTCTTCCCCCTGGGGGGTCGGTG
AGAGTGGGCTCGGGACGGGAGCGAGAGCGGCAGCAGGCGCGGAATCGGAC
TGCACGAGTCGGTTGCCGGGGAAAACTTGTGGAACCGCGGAGGCGATCAG
CGATGTCAGCCATGGCGAGGGGGGTGCGTACTCCAGCGCCTGTCGAAGCC
AAAGAGAACACCCCTGTGAAGCTAGCAGCGGCGAGACATGTGGTAGGAGG
CGCACGCGTGAAGATGAGGACGGGGGGGCTTCGGGGGGGGGAAGGCCTCC
GTTCCCCCATCCCGAGGGTGACTGCACGTTGCTGCGGCAGGTGGACGACT
TCCTCCTAGTGACGACGAGCAAGGAAAAGGCGATGGCGTTTGTTTCGGCG
ATGCACGACAAGGCCAAGACGGGGGAATGGGGTTTCAGCGTACACGAGGC
GAAGGTGAGC
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