mRNA_M-pyrifera_M_contig87817.20407.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87817.20407.1
Unique NamemRNA_M-pyrifera_M_contig87817.20407.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87817.20407.1 vs. uniprot
Match: A0A6B2L049_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L049_9EUKA)

HSP 1 Score: 146 bits (369), Expect = 1.140e-37
Identity = 72/173 (41.62%), Postives = 105/173 (60.69%), Query Frame = 1
Query:   70 FVSFSNFRIAYGRIGIDLPTTL-NVTISNVDASLHSATGASIIGSNNTVENLTVVGTGCEAASIGGGDASSLTPGYNFVTGLNASGYARLVRTYNPGLRFSGVGNTYQDSYLSNAPHQGATGGCTLCTFQRLSFDNLCFESDDSGAFYWGRNWLERGSVVQDSSFSNIQMREP 585
            ++ F N +I Y R    + + + N+ IS  D S +     S+ G+NN + N  + G GC   SI GGD  SLTPG N  +    S YARLVR Y PG+R+ GVGN ++ +Y+ +APH G  GG   C F+     +LC+E+ DSGAFY GR+W++RG+++QD+ F N+  + P
Sbjct:  287 YLQFQNLKIGYSRQAPIIASNVKNIVISGCDISNNGQFSISLSGTNNHLLNNKISGNGCGGLSISGGDQKSLTPGMNEASNNEISFYARLVRAYTPGIRWGGVGNVFKANYVHDAPHCGILGGGNNCLFEGNHLKDLCYETSDSGAFYTGRSWIQRGNLLQDNIFENVYNKVP 459          
BLAST of mRNA_M-pyrifera_M_contig87817.20407.1 vs. uniprot
Match: A9UYI6_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UYI6_MONBE)

HSP 1 Score: 113 bits (283), Expect = 5.240e-26
Identity = 68/209 (32.54%), Postives = 103/209 (49.28%), Query Frame = 1
Query:    1 HKARGEWRKLMPTLPTAS-TPTLAFVSFSNFRIAYGR-IGIDLPTTLNVTISNVDASLHSATGASIIGSNNTVENLTVVGTGCEAASIGGGDASSLTPGYNFVTGLNASGYARLVRTYNPGLRFSGVGNTYQDSYLSNAPHQGATGGCTL--------CTFQRLSFDNLCFESDDSGAFYW----GRNWLERGSVVQDSSFSNIQMREP 585
            H +  ++  ++ TLP A  TP    +   +  +AY R  GI LP      +  +  + H   G  + G NN V N       C   S+ GG+ +SL P  N V G +   YA   RTY  GL ++GVGN+Y ++ + N PH G  GG           C F   +  +L FE+ D+GAFY     G+ W+ RG+V+ + +F +++M EP
Sbjct:  248 HPSNQDFSAVLSTLPHAIFTPNATALHLHDLTVAYARGSGIVLPDARGALLERLVVANHGGNGTQVHGVNNQVRNSDFFNLACMGLSVTGGNRTSLVPSNNVVDGNHIHDYALWKRTYQGGLFWAGVGNSYLNNVIENGPHNGILGGGNEADHLGGNNCIFVNNTLRHLAFETTDTGAFYSCGQDGQAWINRGNVIANCTFIDVRMHEP 456          
BLAST of mRNA_M-pyrifera_M_contig87817.20407.1 vs. uniprot
Match: A0A7S3GKE4_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GKE4_9EUKA)

HSP 1 Score: 109 bits (272), Expect = 3.030e-24
Identity = 61/182 (33.52%), Postives = 91/182 (50.00%), Query Frame = 1
Query:   37 TLPTASTPTLAFVSFSNFRIAYGRIGIDLPTTLNVTISNVDASLHSATGASIIGSNNTVENLTVVGTGCEAASIGGGDASSLTPGYNFVTGLNASGYARLVRTYNPGLRFSGVGNTYQDSYLSNAPHQGATGGCTLCTFQRLSFDNLCFESDDSGAFYWGRNWLERGSVVQDSSFSNIQMRE 582
            T  T S   + +++F NF+       + L     V + N+  +     G S+ G ++ V+N  V  TGC   ++ GGD   LT      TG     ++R+ R Y PG+ FSGVG T   + +S+ PH    GG +L  FQ      +C+E  DSGAFY GR+W  RG++V  + F +I   E
Sbjct:  324 TADTTSYLKMEYIAFENFQ----GTAVSLKNVNKVVLENLAVNAAGQVGISLSGYSSQVDNSIVSSTGCAGITLTGGDNVQLTASSLSATGNTLRYFSRVKRAYTPGIHFSGVGITLSSNKISDGPHNAILGGGSLNLFQYNYIARVCYEVTDSGAFYTGRSWANRGNIVHGNVFEDIYNTE 501          
BLAST of mRNA_M-pyrifera_M_contig87817.20407.1 vs. uniprot
Match: A0A7S0NG32_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NG32_9CRYP)

HSP 1 Score: 92.8 bits (229), Expect = 8.270e-20
Identity = 44/131 (33.59%), Postives = 76/131 (58.02%), Query Frame = 1
Query:  181 GASIIGSNNTVENLTVVGTGCEAASIGGGDASSLTPGYNFVTGLNASGYARLVRTYNPGLRFSGVGNTYQDSYLSNAPHQGATGGCTLCTFQRLSFDNLCFESDDSGAFYWGRNWLERGSVVQDSSFSNIQ 573
            G  I GS+  V +  +   GC   ++ GG+ +SLT   N +   +   +AR+ R+Y PG+ + G G++ +DSY+ ++PH G  G    C F     ++L FE+ D+GA+Y GR+W+ RG+++  + F  I+
Sbjct:    1 GMDIDGSDVIVSSSNISSCGCGGIALNGGNTTSLTRSRNVIESADIHHFARIRRSYTPGVGWKGGGHSIRDSYIHHSPHAGILGLGNDCEFNGNVLESLAFEATDTGAWYSGRSWVNRGNIISRNRFVKIR 131          
BLAST of mRNA_M-pyrifera_M_contig87817.20407.1 vs. uniprot
Match: L1J0F5_GUITC (Beta_helix domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J0F5_GUITC)

HSP 1 Score: 96.3 bits (238), Expect = 1.130e-19
Identity = 48/147 (32.65%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  133 LNVTISNVDASLHSATGASIIGSNNTVENLTVVGTGCEAASIGGGDASSLTPGYNFVTGLNASGYARLVRTYNPGLRFSGVGNTYQDSYLSNAPHQGATGGCTLCTFQRLSFDNLCFESDDSGAFYWGRNWLERGSVVQDSSFSNIQ 573
            +NV++SN+       TG  + GS+  + +  V   GC   ++ GG+ +SLT   N +   +   +AR+ R+Y PG+ + G G++ + S++ +APH G  G    C F    F++L FE+ D+GA+Y GR+W+ RG+++  + F  I+
Sbjct:  429 INVSVSNI-----GKTGMDVDGSDILISSTNVSFCGCGGIALNGGNTTSLTRSNNEIELADIHNFARIRRSYTPGIGWRGGGHSIRQSHIHHAPHSGILGLGNDCEFDGNIFESLAFEATDTGAWYSGRSWINRGNIISRNRFVKIR 570          
BLAST of mRNA_M-pyrifera_M_contig87817.20407.1 vs. uniprot
Match: A0A7S0FUP0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FUP0_9DINO)

HSP 1 Score: 92.8 bits (229), Expect = 8.690e-19
Identity = 54/155 (34.84%), Postives = 85/155 (54.84%), Query Frame = 1
Query:  136 NVTISNVDASLHSATGASIIGSNNTVENLTVVGTGCEAASIGGGDASSLTPGYNFVTGLNASGYARLVRTYNPGLRFSGVGNTYQDSYLSNAPHQ-----GATGGCTLCTFQRLSFDNLCFESDDSGAFYW----GRNWLERGSVVQDSSFSNIQ 573
            +V + NV       TG  I G ++ V N  V   GC  A++ GG+A+ L PG N+        +A L RTY  G+ ++GV NTY+ + +S++PH      G TG    C F+  SF++  +E+ D+GAFY        ++ RG+V++ SSF N++
Sbjct:  129 SVHLENVTVQYIGGTGIDIRGFDSGVSNSVVHDVGCRGAAVHGGNATLLQPGNNYADHNTIYHFALLKRTYQAGIDWAGVNNTYRHNRISDSPHNCMLGGGNTGDGVNCLFEYNSFEDCAYEAADAGAFYTCGQQATAFVNRGNVLRHSSFRNMR 283          
BLAST of mRNA_M-pyrifera_M_contig87817.20407.1 vs. uniprot
Match: A0A7S4CIP4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CIP4_9EUGL)

HSP 1 Score: 78.6 bits (192), Expect = 1.780e-15
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  331 RLVRTYNPGLRFSGVGNTYQDSYLSNAPHQGATGGCTLCTFQRLSFDNLCFESDDSGAFYWGRNWLERGSVVQDSSFSNIQMREP 585
            R  RTY PG+ FSGVGN Y ++ L ++PHQG TG      F   +F+ LC E+ D+ A+Y GR++ +RGSV++ + F +I+   P
Sbjct:    9 RWKRTYQPGIYFSGVGNAYLNNVLHDSPHQGMTGYGNDHRFIGNTFERLCHETSDASAWYQGRSFAQRGSVLRGNVFRDIRRLAP 93          
BLAST of mRNA_M-pyrifera_M_contig87817.20407.1 vs. uniprot
Match: A0A1G1C075_9BACT (Uncharacterized protein n=1 Tax=Lentisphaerae bacterium RIFOXYB12_FULL_65_16 TaxID=1798581 RepID=A0A1G1C075_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 3.020e-15
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  256 IGGGDASSLTPGYNFVTGLNASGYARLVRTYNPGLRFSGVGNTYQDSYLSNAPHQGATGGCTLCTFQRLSFDNLCFESDDSGAFYWGRNWLERGSVVQDSSFSNI 570
            + GGD  +LTP   F    +   +ARL R YNPG+   GVGN    + + NAPH     G      +     ++C+ES+D+GA Y GRNW  RG V++++ F +I
Sbjct:  396 LSGGDRKTLTPAGLFAENNHVHHFARLNRVYNPGITLHGVGNRASHNLIDNAPHMAMGFGGNDHVIEFNEIHSVCYESNDAGAIYTGRNWTMRGHVIRNNYFHHI 500          
BLAST of mRNA_M-pyrifera_M_contig87817.20407.1 vs. uniprot
Match: A0A1M6J9F1_9BACT (Right handed beta helix region n=1 Tax=Tangfeifania diversioriginum TaxID=1168035 RepID=A0A1M6J9F1_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 7.160e-15
Identity = 48/143 (33.57%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  151 NVDASLHSATGA-SIIGSNNTVENLTVVGTGCEAASIGGGDASSLTPGYNFVTGLNASGYARLVRTYNPGLRFSGVGNTYQDSYLSNAPHQGA--TGGCTLCTFQRLSFDNLCFESDDSGAFYWGRNWLERGSVVQDSSFSNI 570
            N+D  +  A  + S+ G  N + N +V  TG     + GGD  +L P  NFV       + R+ +TY  G++ SGVGN   ++ + N+PH     +G   L  +  +   ++C E+DD GA Y+GRN  ERG +VQ + F ++
Sbjct:  350 NIDDKIADANESNSVAGKKNGLANCSVYQTGMGGIKLCGGDRQTLEPAENFVRNCTIHDFNRIAKTYCAGIKISGVGNRISNNEIFNSPHVAILLSGNDHLIEYNEIH--DVCRETDDVGALYYGRNPSERGHIVQFNYFHHL 490          
BLAST of mRNA_M-pyrifera_M_contig87817.20407.1 vs. uniprot
Match: A0A444LED1_9HYPH (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Rhizobium sp. 24NR TaxID=2503024 RepID=A0A444LED1_9HYPH)

HSP 1 Score: 78.2 bits (191), Expect = 1.990e-13
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  262 GGDASSLTPGYNFVTGLNASGYARLVRTYNPGLRFSGVGNTYQDSYLSNAPHQGA--TGGCTLCTFQRLSFDNLCFESDDSGAFYWGRNWLERGSVVQDSSFSNIQM 576
            GGD  SLTPG   +     S Y +  RTY P +   GVGN  +++ +SN PH      G   + +   +S  ++  E+DD+GA Y GR+W ERG++++ + FSNI M
Sbjct:  290 GGDRISLTPGNIVIANSKISRYGQDSRTYRPAVLIRGVGNRIENNEISNGPHSAIILNGNDHVISGNHIS--DVVKEADDAGAIYVGRDWTERGNIIESNLFSNIGM 394          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87817.20407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B2L049_9EUKA1.140e-3741.62Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A9UYI6_MONBE5.240e-2632.54Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A7S3GKE4_9EUKA3.030e-2433.52Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S0NG32_9CRYP8.270e-2033.59Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
L1J0F5_GUITC1.130e-1932.65Beta_helix domain-containing protein n=2 Tax=Guill... [more]
A0A7S0FUP0_9DINO8.690e-1934.84Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A7S4CIP4_9EUGL1.780e-1543.53Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A1G1C075_9BACT3.020e-1538.10Uncharacterized protein n=1 Tax=Lentisphaerae bact... [more]
A0A1M6J9F1_9BACT7.160e-1533.57Right handed beta helix region n=1 Tax=Tangfeifani... [more]
A0A444LED1_9HYPH1.990e-1338.32Right-handed parallel beta-helix repeat-containing... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87817contigM-pyrifera_M_contig87817:8..592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score112.5
Seed ortholog evalue2.2e-22
Seed eggNOG ortholog81824.XP_001745642.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Right handed beta helix region
EggNOG OGs2A755@1,2RYDD@2759,3AUI3@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size585
Cds size555
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.7545812-CDS-M-pyrifera_M_contig87817:7..5621622816787.7545812-CDS-M-pyrifera_M_contig87817:7..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87817 8..562 -
1692278178.580453-CDS-M-pyrifera_M_contig87817:7..5621692278178.580453-CDS-M-pyrifera_M_contig87817:7..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87817 8..562 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.7693455-UTR-M-pyrifera_M_contig87817:562..5921622816787.7693455-UTR-M-pyrifera_M_contig87817:562..592Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87817 563..592 -
1692278178.5965164-UTR-M-pyrifera_M_contig87817:562..5921692278178.5965164-UTR-M-pyrifera_M_contig87817:562..592Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87817 563..592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87817.20407.1prot_M-pyrifera_M_contig87817.20407.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87817 8..562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87817.20407.1

>prot_M-pyrifera_M_contig87817.20407.1 ID=prot_M-pyrifera_M_contig87817.20407.1|Name=mRNA_M-pyrifera_M_contig87817.20407.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=185bp
MPTLPTASTPTLAFVSFSNFRIAYGRIGIDLPTTLNVTISNVDASLHSAT
GASIIGSNNTVENLTVVGTGCEAASIGGGDASSLTPGYNFVTGLNASGYA
RLVRTYNPGLRFSGVGNTYQDSYLSNAPHQGATGGCTLCTFQRLSFDNLC
FESDDSGAFYWGRNWLERGSVVQDSSFSNIQMREP
back to top

mRNA from alignment at M-pyrifera_M_contig87817:8..592-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87817.20407.1 ID=mRNA_M-pyrifera_M_contig87817.20407.1|Name=mRNA_M-pyrifera_M_contig87817.20407.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=585bp|location=Sequence derived from alignment at M-pyrifera_M_contig87817:8..592- (Macrocystis pyrifera P11B4 male)
CACAAGGCAAGAGGTGAATGGCGTAAACTGATGCCCACTCTCCCAACTGC ATCCACCCCAACTCTCGCCTTTGTCTCTTTCTCCAACTTCCGCATTGCAT ATGGACGGATTGGGATTGACCTGCCAACAACTCTAAACGTCACCATTTCC AATGTGGATGCTTCCCTCCACAGTGCAACTGGAGCATCCATCATTGGCTC CAACAACACTGTAGAAAATCTCACAGTGGTTGGAACAGGTTGTGAGGCAG CTTCCATTGGTGGTGGTGATGCTTCTTCTCTAACTCCAGGATACAATTTT GTGACGGGGTTGAATGCTTCAGGCTATGCACGTTTGGTGCGTACCTACAA CCCAGGACTTCGATTCTCTGGTGTGGGAAACACATATCAAGATTCCTACC TTTCCAATGCACCTCATCAAGGAGCAACAGGTGGATGCACACTTTGCACA TTCCAACGTCTTTCCTTTGACAACCTTTGCTTTGAATCAGATGACTCTGG AGCATTTTATTGGGGTCGAAATTGGTTGGAACGAGGTTCAGTGGTACAAG ACTCGTCCTTCTCTAACATCCAAATGCGTGAACCA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig87817:8..592-

>mRNA_M-pyrifera_M_contig87817.20407.1 ID=mRNA_M-pyrifera_M_contig87817.20407.1|Name=mRNA_M-pyrifera_M_contig87817.20407.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig87817:8..592- (Macrocystis pyrifera P11B4 male)
ATGCCCACTCTCCCAACTGCATCCACCCCAACTCTCGCCTTTGTCTCTTT
CTCCAACTTCCGCATTGCATATGGACGGATTGGGATTGACCTGCCAACAA
CTCTAAACGTCACCATTTCCAATGTGGATGCTTCCCTCCACAGTGCAACT
GGAGCATCCATCATTGGCTCCAACAACACTGTAGAAAATCTCACAGTGGT
TGGAACAGGTTGTGAGGCAGCTTCCATTGGTGGTGGTGATGCTTCTTCTC
TAACTCCAGGATACAATTTTGTGACGGGGTTGAATGCTTCAGGCTATGCA
CGTTTGGTGCGTACCTACAACCCAGGACTTCGATTCTCTGGTGTGGGAAA
CACATATCAAGATTCCTACCTTTCCAATGCACCTCATCAAGGAGCAACAG
GTGGATGCACACTTTGCACATTCCAACGTCTTTCCTTTGACAACCTTTGC
TTTGAATCAGATGACTCTGGAGCATTTTATTGGGGTCGAAATTGGTTGGA
ACGAGGTTCAGTGGTACAAGACTCGTCCTTCTCTAACATCCAAATGCGTG
AACCAATGCCCACTCTCCCAACTGCATCCACCCCAACTCTCGCCTTTGTC
TCTTTCTCCAACTTCCGCATTGCATATGGACGGATTGGGATTGACCTGCC
AACAACTCTAAACGTCACCATTTCCAATGTGGATGCTTCCCTCCACAGTG
CAACTGGAGCATCCATCATTGGCTCCAACAACACTGTAGAAAATCTCACA
GTGGTTGGAACAGGTTGTGAGGCAGCTTCCATTGGTGGTGGTGATGCTTC
TTCTCTAACTCCAGGATACAATTTTGTGACGGGGTTGAATGCTTCAGGCT
ATGCACGTTTGGTGCGTACCTACAACCCAGGACTTCGATTCTCTGGTGTG
GGAAACACATATCAAGATTCCTACCTTTCCAATGCACCTCATCAAGGAGC
AACAGGTGGATGCACACTTTGCACATTCCAACGTCTTTCCTTTGACAACC
TTTGCTTTGAATCAGATGACTCTGGAGCATTTTATTGGGGTCGAAATTGG
TTGGAACGAGGTTCAGTGGTACAAGACTCGTCCTTCTCTAACATCCAAAT
GCGTGAACCA
back to top