mRNA_M-pyrifera_M_contig87805.20398.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87805.20398.1
Unique NamemRNA_M-pyrifera_M_contig87805.20398.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87805.20398.1 vs. uniprot
Match: A0A5A8C152_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C152_CAFRO)

HSP 1 Score: 132 bits (332), Expect = 5.960e-32
Identity = 86/233 (36.91%), Postives = 122/233 (52.36%), Query Frame = 1
Query:    1 EHLPCSNRGLCSLDSGQCSCFPGYDGTDCGLSTVSTETDNDDPGILVNSVEATYTGNVLQLETVKEPAEDFYFIRAFAAGREQFAVKGTGELVVGAFTVETIVVSNGQTITGGGLQVDTVGIXXXXXXXXXXDDGALLEQQKDAAGVVVRSIVRNNGAEAFTNTLLKLDIVASTIDSFDATSE---------------------TSLFDIRGDGLVTSRAGGVVVKESGVTIE 636
            EH+ CS RGLC  D G+C+C+ G+ G  C   + +TE  N++P +L  +  +TYTGNVLQL+T K  A DFYF++A AAG   FAV+G G+  +  F   T  V+ G TIT           XXXXXXXXXX       +  +   + V S+V +N  + +T+TL++L +     D F   ++                     T LF + G+G      GGV V ESG+T+E
Sbjct:  648 EHVMCSRRGLCDFDEGRCTCYSGFTGVACSQPSAATEVTNNEPALLAAATSSTYTGNVLQLQTTKRAAPDFYFLKALAAGATVFAVRGDGQAQIDKFQTGTATVTGGLTITQXXXXXXXXXXXXXXXXXXXXXXXIASTRTTNNVNLNVESVVTDNAEDGYTSTLVRLAVTQGPSDLFTLNNKNHYVMQVFDNTVQSTGGAYVNTLLFSMLGNGYTMFHKGGVHVSESGLTVE 880          
BLAST of mRNA_M-pyrifera_M_contig87805.20398.1 vs. uniprot
Match: A0A5A8C8W7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C8W7_CAFRO)

HSP 1 Score: 132 bits (332), Expect = 6.270e-32
Identity = 86/233 (36.91%), Postives = 122/233 (52.36%), Query Frame = 1
Query:    1 EHLPCSNRGLCSLDSGQCSCFPGYDGTDCGLSTVSTETDNDDPGILVNSVEATYTGNVLQLETVKEPAEDFYFIRAFAAGREQFAVKGTGELVVGAFTVETIVVSNGQTITGGGLQVDTVGIXXXXXXXXXXDDGALLEQQKDAAGVVVRSIVRNNGAEAFTNTLLKLDIVASTIDSFDATSE---------------------TSLFDIRGDGLVTSRAGGVVVKESGVTIE 636
            EH+ CS RGLC  D G+C+C+ G+ G  C   + +TE  N++P +L  +  +TYTGNVLQL+T K  A DFYF++A AAG   FAV+G G+  +  F   T  V+ G TIT           XXXXXXXXXX       +  +   + V S+V +N  + +T+TL++L +     D F   ++                     T LF + G+G      GGV V ESG+T+E
Sbjct:  648 EHVMCSRRGLCDFDEGRCTCYSGFTGVACSQPSAATEVTNNEPALLAAATSSTYTGNVLQLQTTKRAAPDFYFLKALAAGATVFAVRGDGQAQIDKFQTGTATVTGGLTITQXXXXXXXXXXXXXXXXXXXXXXXIASTRTTNNVNLNVESVVTDNAEDGYTSTLVRLAVTQGPSDLFTLNNKNHYVMQVFDNTVQSTGGAYVNTLLFSMLGNGYTMFHKGGVHVSESGLTVE 880          
BLAST of mRNA_M-pyrifera_M_contig87805.20398.1 vs. uniprot
Match: A0A7S0JNH0_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JNH0_CAFRO)

HSP 1 Score: 78.2 bits (191), Expect = 3.730e-13
Identity = 61/223 (27.35%), Postives = 100/223 (44.84%), Query Frame = 1
Query:    1 EHLPCSNRGLCSLDSGQCSCFPGYDGTDCGLSTVSTETDNDDPGILVNSVEATYTGNVLQLETVKEPAEDFYFIRAFAAGREQFAVKGTGEL------VVGAFTVETIVVSNGQTITGGGLQVDTVGIXXXXXXXXXXDDGALLEQQKDAAGVVVRSIVRNNGAEAFTNTLLKLDIVASTIDSFDATS-----ETSLFDIRGDGLVTSRAGGVVVKESGVTIE 636
            EH+ CS  G+C+   G C+CF    G  C +   +     D+P + V     +Y GN   +ET+++ + DF F  A A     F V GTG +      +    T + + V+NG TIT GGL+++  G           DD   LE  +  +     ++V N+ A+  ++ L  L +      +F   S     +  +F I G+G +T     VV  E G+ ++
Sbjct:  466 EHIACSGNGVCN--QGVCTCFGLSTGGACQVVPSAELFGADEPYLNVFIANPSYKGNAFVVETLRDESPDFNFFMAIANQNTLFRVDGTGMVWSDSASIQRRTTTKFLTVTNGATITSGGLRIEAAGQTIVSGGLSVKDDSTQLETMQPLSP----ALVVNSTADYRSSALAILSVAERPNTTFSFLSVLTRHQDEIFSIAGNGRLTLSGPDVVNNEGGLDVQ 682          
BLAST of mRNA_M-pyrifera_M_contig87805.20398.1 vs. uniprot
Match: A0A5A8D2H2_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D2H2_CAFRO)

HSP 1 Score: 78.2 bits (191), Expect = 3.970e-13
Identity = 61/223 (27.35%), Postives = 100/223 (44.84%), Query Frame = 1
Query:    1 EHLPCSNRGLCSLDSGQCSCFPGYDGTDCGLSTVSTETDNDDPGILVNSVEATYTGNVLQLETVKEPAEDFYFIRAFAAGREQFAVKGTGEL------VVGAFTVETIVVSNGQTITGGGLQVDTVGIXXXXXXXXXXDDGALLEQQKDAAGVVVRSIVRNNGAEAFTNTLLKLDIVASTIDSFDATS-----ETSLFDIRGDGLVTSRAGGVVVKESGVTIE 636
            EH+ CS  G+C+   G C+CF    G  C +   +     D+P + V     +Y GN   +ET+++ + DF F  A A     F V GTG +      +    T + + V+NG TIT GGL+++  G           DD   LE  +  +     ++V N+ A+  ++ L  L +      +F   S     +  +F I G+G +T     VV  E G+ ++
Sbjct:  435 EHIACSGNGVCN--QGVCTCFGLSTGGACQVVPSAELFGADEPYLNVFIANPSYKGNAFVVETLRDESPDFNFFMAIANQNTLFRVDGTGMVWSDSASIQRRTTTKFLTVTNGATITSGGLRIEAAGQTIVSGGLSVKDDSTQLETMQPLSP----ALVVNSTADFRSSALAILSVAERPNTTFSFLSVLTRHQDEIFSIAGNGRLTLSGPDVVNNEGGLDVQ 651          
BLAST of mRNA_M-pyrifera_M_contig87805.20398.1 vs. uniprot
Match: A0A5A8CI37_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CI37_CAFRO)

HSP 1 Score: 78.2 bits (191), Expect = 3.990e-13
Identity = 61/223 (27.35%), Postives = 100/223 (44.84%), Query Frame = 1
Query:    1 EHLPCSNRGLCSLDSGQCSCFPGYDGTDCGLSTVSTETDNDDPGILVNSVEATYTGNVLQLETVKEPAEDFYFIRAFAAGREQFAVKGTGEL------VVGAFTVETIVVSNGQTITGGGLQVDTVGIXXXXXXXXXXDDGALLEQQKDAAGVVVRSIVRNNGAEAFTNTLLKLDIVASTIDSFDATS-----ETSLFDIRGDGLVTSRAGGVVVKESGVTIE 636
            EH+ CS  G+C+   G C+CF    G  C +   +     D+P + V     +Y GN   +ET+++ + DF F  A A     F V GTG +      +    T + + V+NG TIT GGL+++  G           DD   LE  +  +     ++V N+ A+  ++ L  L +      +F   S     +  +F I G+G +T     VV  E G+ ++
Sbjct:  435 EHIACSGNGVCN--QGVCTCFGLSTGGACQVVPSAELFGADEPYLNVFIANPSYKGNAFVVETLRDESPDFNFFMAIANQNTLFRVDGTGMVWSDSASIQRRTTTKFLTVTNGATITSGGLRIEAAGQTIASGGLSVKDDSTQLETMQPLSP----ALVVNSTADFRSSALAILSVAERPNTTFSFLSVLTRHQDEIFSIAGNGRLTLSGPDVVNNEGGLDVQ 651          
BLAST of mRNA_M-pyrifera_M_contig87805.20398.1 vs. uniprot
Match: A0A5A8C251_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C251_CAFRO)

HSP 1 Score: 78.2 bits (191), Expect = 4.060e-13
Identity = 61/223 (27.35%), Postives = 100/223 (44.84%), Query Frame = 1
Query:    1 EHLPCSNRGLCSLDSGQCSCFPGYDGTDCGLSTVSTETDNDDPGILVNSVEATYTGNVLQLETVKEPAEDFYFIRAFAAGREQFAVKGTGEL------VVGAFTVETIVVSNGQTITGGGLQVDTVGIXXXXXXXXXXDDGALLEQQKDAAGVVVRSIVRNNGAEAFTNTLLKLDIVASTIDSFDATS-----ETSLFDIRGDGLVTSRAGGVVVKESGVTIE 636
            EH+ CS  G+C+   G C+CF    G  C +   +     D+P + V     +Y GN   +ET+++ + DF F  A A     F V GTG +      +    T + + V+NG TIT GGL+++  G           DD   LE  +  +     ++V N+ A+  ++ L  L +      +F   S     +  +F I G+G +T     VV  E G+ ++
Sbjct:  435 EHIACSGNGVCN--QGVCTCFGLSTGGACQVVPSAELFGADEPYLNVFIANPSYKGNAFVVETLRDESPDFNFFMAIANQNTLFRVDGTGMVWSDSASIQRRTTTKFLTVTNGATITSGGLRIEAAGQTIASGGLSVKDDSTQLETMQPLSP----ALVVNSTADFRSSALAILSVAERPNTTFSFLSVLTRHQDEIFSIAGNGRLTLSGPDVVNNEGGLDVQ 651          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87805.20398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5A8C152_CAFRO5.960e-3236.91Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A5A8C8W7_CAFRO6.270e-3236.91Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S0JNH0_CAFRO3.730e-1327.35Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8D2H2_CAFRO3.970e-1327.35Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CI37_CAFRO3.990e-1327.35Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A5A8C251_CAFRO4.060e-1327.35Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87805contigM-pyrifera_M_contig87805:71..775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue4.4e-19
Seed eggNOG ortholog157072.XP_008863655.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size639
Cds size639
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.41209-CDS-M-pyrifera_M_contig87805:70..5771622816787.41209-CDS-M-pyrifera_M_contig87805:70..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87805 71..577 +
1692278178.4286082-CDS-M-pyrifera_M_contig87805:70..5771692278178.4286082-CDS-M-pyrifera_M_contig87805:70..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87805 71..577 +
1622816787.4269743-CDS-M-pyrifera_M_contig87805:643..7751622816787.4269743-CDS-M-pyrifera_M_contig87805:643..775Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87805 644..775 +
1692278178.4422612-CDS-M-pyrifera_M_contig87805:643..7751692278178.4422612-CDS-M-pyrifera_M_contig87805:643..775Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87805 644..775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87805.20398.1prot_M-pyrifera_M_contig87805.20398.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87805 71..775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87805.20398.1

>prot_M-pyrifera_M_contig87805.20398.1 ID=prot_M-pyrifera_M_contig87805.20398.1|Name=mRNA_M-pyrifera_M_contig87805.20398.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=213bp
EHLPCSNRGLCSLDSGQCSCFPGYDGTDCGLSTVSTETDNDDPGILVNSV
EATYTGNVLQLETVKEPAEDFYFIRAFAAGREQFAVKGTGELVVGAFTVE
TIVVSNGQTITGGGLQVDTVGITVSEGGITVKDDGALLEQQKDAAGVVVR
SIVRNNGAEAFTNTLLKLDIVASTIDSFDATSETSLFDIRGDGLVTSRAG
GVVVKESGVTIED
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mRNA from alignment at M-pyrifera_M_contig87805:71..775+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87805.20398.1 ID=mRNA_M-pyrifera_M_contig87805.20398.1|Name=mRNA_M-pyrifera_M_contig87805.20398.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=705bp|location=Sequence derived from alignment at M-pyrifera_M_contig87805:71..775+ (Macrocystis pyrifera P11B4 male)
GAGCATCTCCCTTGCTCGAACCGGGGACTGTGTTCACTGGATTCTGGACA GTGTTCTTGCTTCCCAGGCTATGATGGCACTGACTGTGGTCTTTCCACCG TATCCACCGAAACAGACAATGATGACCCGGGCATTCTGGTCAATTCTGTG GAAGCAACATACACGGGCAATGTTCTTCAACTGGAGACTGTGAAAGAGCC AGCAGAGGACTTTTACTTCATCCGAGCCTTTGCAGCAGGAAGGGAACAAT TTGCTGTCAAAGGGACTGGAGAATTGGTCGTAGGAGCCTTCACCGTGGAG ACAATTGTAGTTTCAAACGGCCAAACGATCACTGGTGGTGGCCTCCAAGT TGATACTGTTGGCATAACAGTCTCTGAAGGTGGTATCACAGTAAAGGATG ATGGAGCTCTCTTGGAGCAACAAAAGGATGCTGCCGGGGTTGTGGTGCGA TCAATCGTGCGAAACAACGGTGCTGAAGCGTTCACCAACACTTTACTGAA ACTGGATGTTCGACAGGGTGACACGGATGACGGAAACGGGGATCGAGTCA ACACGGATCACTACTCATTGGAGATTGTTGCTTCAACGATTGACTCGTTT GATGCAACGTCCGAGACGTCATTGTTTGATATTCGAGGTGATGGTCTGGT TACATCTCGTGCGGGAGGAGTTGTAGTGAAAGAAAGTGGAGTCACAATTG AAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87805:71..775+

>mRNA_M-pyrifera_M_contig87805.20398.1 ID=mRNA_M-pyrifera_M_contig87805.20398.1|Name=mRNA_M-pyrifera_M_contig87805.20398.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1278bp|location=Sequence derived from alignment at M-pyrifera_M_contig87805:71..775+ (Macrocystis pyrifera P11B4 male)
GAGCATCTCCCTTGCTCGAACCGGGGACTGTGTTCACTGGATTCTGGACA
GTGTTCTTGCTTCCCAGGCTATGATGGCACTGACTGTGGTCTTTCCACCG
TATCCACCGAAACAGACAATGATGACCCGGGCATTCTGGTCAATTCTGTG
GAAGCAACATACACGGGCAATGTTCTTCAACTGGAGACTGTGAAAGAGCC
AGCAGAGGACTTTTACTTCATCCGAGCCTTTGCAGCAGGAAGGGAACAAT
TTGCTGTCAAAGGGACTGGAGAATTGGTCGTAGGAGCCTTCACCGTGGAG
ACAATTGTAGTTTCAAACGGCCAAACGATCACTGGTGGTGGCCTCCAAGT
TGATACTGTTGGCATAACAGTCTCTGAAGGTGGTATCACAGTAAAGGATG
ATGGAGCTCTCTTGGAGCAACAAAAGGATGCTGCCGGGGTTGTGGTGCGA
TCAATCGTGCGAAACAACGGTGCTGAAGCGTTCACCAACACTTTACTGAA
ACTGGATGAGCATCTCCCTTGCTCGAACCGGGGACTGTGTTCACTGGATT
CTGGACAGTGTTCTTGCTTCCCAGGCTATGATGGCACTGACTGTGGTCTT
TCCACCGTATCCACCGAAACAGACAATGATGACCCGGGCATTCTGGTCAA
TTCTGTGGAAGCAACATACACGGGCAATGTTCTTCAACTGGAGACTGTGA
AAGAGCCAGCAGAGGACTTTTACTTCATCCGAGCCTTTGCAGCAGGAAGG
GAACAATTTGCTGTCAAAGGGACTGGAGAATTGGTCGTAGGAGCCTTCAC
CGTGGAGACAATTGTAGTTTCAAACGGCCAAACGATCACTGGTGGTGGCC
TCCAAGTTGATACTGTTGGCATAACAGTCTCTGAAGGTGGTATCACAGTA
AAGGATGATGGAGCTCTCTTGGAGCAACAAAAGGATGCTGCCGGGGTTGT
GGTGCGATCAATCGTGCGAAACAACGGTGCTGAAGCGTTCACCAACACTT
TACTGAAACTGGATATTGTTGCTTCAACGATTGACTCGTTTGATGCAACG
TCCGAGACGTCATTGTTTGATATTCGAGGTGATGGTCTGGTTACATCTCG
TGCGGGAGGAGTTGTAGTGAAAGAAAGTGGAGTCACAATTGAAGATATTG
TTGCTTCAACGATTGACTCGTTTGATGCAACGTCCGAGACGTCATTGTTT
GATATTCGAGGTGATGGTCTGGTTACATCTCGTGCGGGAGGAGTTGTAGT
GAAAGAAAGTGGAGTCACAATTGAAGAT
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