mRNA_M-pyrifera_M_contig8779.20392.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8779.20392.1
Unique NamemRNA_M-pyrifera_M_contig8779.20392.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8779.20392.1 vs. uniprot
Match: D8LGL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL5_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 3.790e-38
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 MAILMKHKMLIFWMIMLGFIAFGAWHSEDMETAYWAMWTVPIIFLFVWLLFDCIFVNDKAFIFDHDYE 204
            MAI  KHK+LIFW+IML FIAFGAWHSEDMET +WAMWTVPIIFLFVWLLFDCIFV+DKAF+FDHDYE
Sbjct:    1 MAIQTKHKLLIFWIIMLSFIAFGAWHSEDMETPFWAMWTVPIIFLFVWLLFDCIFVDDKAFVFDHDYE 68
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BLAST of mRNA_M-pyrifera_M_contig8779.20392.1 vs. uniprot
Match: A0A836CKG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKG6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.590e-19
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 MAILMKHKMLIFWMIMLGFIAFGAWHS-EDMETAYWAMWTVPIIFLFVWLLFDCIFVND-KAFIFDHDYE 204
            MA+  +HK++   +I    +AF AW++ +D  TA+WAMWTVPI+FL  WLL DC+FV+D KAFIFDHDYE
Sbjct:    1 MAVYGRHKLITLLIIXXXXVAFAAWNNTDDNNTAWWAMWTVPIMFLSFWLLMDCMFVSDDKAFIFDHDYE 70
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8779.20392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGL5_ECTSI3.790e-3886.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKG6_9STRA6.590e-1957.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8779contigM-pyrifera_M_contig8779:9895..10098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog2880.D8LGL5
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E174@1,2S8JA@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_002660.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.177981-CDS-M-pyrifera_M_contig8779:9894..100981622816787.177981-CDS-M-pyrifera_M_contig8779:9894..10098Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8779 9895..10098 +
1692278178.3226776-CDS-M-pyrifera_M_contig8779:9894..100981692278178.3226776-CDS-M-pyrifera_M_contig8779:9894..10098Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8779 9895..10098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8779.20392.1prot_M-pyrifera_M_contig8779.20392.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8779 9895..10098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8779.20392.1

>prot_M-pyrifera_M_contig8779.20392.1 ID=prot_M-pyrifera_M_contig8779.20392.1|Name=mRNA_M-pyrifera_M_contig8779.20392.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MAILMKHKMLIFWMIMLGFIAFGAWHSEDMETAYWAMWTVPIIFLFVWLL
FDCIFVNDKAFIFDHDYE
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mRNA from alignment at M-pyrifera_M_contig8779:9895..10098+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8779.20392.1 ID=mRNA_M-pyrifera_M_contig8779.20392.1|Name=mRNA_M-pyrifera_M_contig8779.20392.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig8779:9895..10098+ (Macrocystis pyrifera P11B4 male)
ATGGCGATCCTGATGAAGCACAAGATGCTCATCTTCTGGATGATTATGCT
CGGCTTCATCGCGTTCGGAGCATGGCACAGCGAGGACATGGAGACGGCGT
ATTGGGCGATGTGGACAGTGCCTATCATCTTTTTGTTCGTCTGGCTTCTG
TTCGATTGCATCTTCGTCAACGACAAGGCATTCATCTTCGACCACGACTA
CGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8779:9895..10098+

>mRNA_M-pyrifera_M_contig8779.20392.1 ID=mRNA_M-pyrifera_M_contig8779.20392.1|Name=mRNA_M-pyrifera_M_contig8779.20392.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig8779:9895..10098+ (Macrocystis pyrifera P11B4 male)
ATGGCGATCCTGATGAAGCACAAGATGCTCATCTTCTGGATGATTATGCT
CGGCTTCATCGCGTTCGGAGCATGGCACAGCGAGGACATGGAGACGGCGT
ATTGGGCGATGTGGACAGTGCCTATCATCTTTTTGTTCGTCTGGCTTCTG
TTCGATTGCATCTTCGTCAACGACAAGGCATTCATCTTCGACCACGACTA
CGAGATGGCGATCCTGATGAAGCACAAGATGCTCATCTTCTGGATGATTA
TGCTCGGCTTCATCGCGTTCGGAGCATGGCACAGCGAGGACATGGAGACG
GCGTATTGGGCGATGTGGACAGTGCCTATCATCTTTTTGTTCGTCTGGCT
TCTGTTCGATTGCATCTTCGTCAACGACAAGGCATTCATCTTCGACCACG
ACTACGAG
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