mRNA_M-pyrifera_M_contig87711.20376.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87711.20376.1
Unique NamemRNA_M-pyrifera_M_contig87711.20376.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87711.20376.1 vs. uniprot
Match: D8LJI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI7_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.110e-36
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 1
Query:    1 NLKPWEFALIGSAAFAAGVTRAVSTAVIVFELSGQNHLRLPLGVALMISYFIANRFTKGVYDALTDTNGTPHLEE 225
            N +PWEFALIGSAAF+AGVTRAVSTAVIVFELSG+NHLRLPLGVALMISYFIANRFTKGVYDAL DTN TPHLEE
Sbjct:  107 NFQPWEFALIGSAAFSAGVTRAVSTAVIVFELSGENHLRLPLGVALMISYFIANRFTKGVYDALMDTNKTPHLEE 181          
BLAST of mRNA_M-pyrifera_M_contig87711.20376.1 vs. uniprot
Match: A0A6H5K923_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K923_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 4.250e-36
Identity = 68/76 (89.47%), Postives = 72/76 (94.74%), Query Frame = 1
Query:    1 NLKPWEFALIGSAAFAAGVTRAVSTAVIVFELSGQNHLRLPLGVALMISYFIANRFTKGVYDALTDTNGTPHLEEV 228
              +PWEFALIGSAAF+AGVTRAVSTAVIVFELSG+NHLRLPLGVALMISYFIANRFTKG+YDAL DTN TPHLEEV
Sbjct:  253 KFQPWEFALIGSAAFSAGVTRAVSTAVIVFELSGENHLRLPLGVALMISYFIANRFTKGIYDALMDTNKTPHLEEV 328          
BLAST of mRNA_M-pyrifera_M_contig87711.20376.1 vs. uniprot
Match: W7UA92_9STRA (Chloride channel protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UA92_9STRA)

HSP 1 Score: 123 bits (308), Expect = 5.840e-31
Identity = 58/76 (76.32%), Postives = 70/76 (92.11%), Query Frame = 1
Query:    1 NLKPWEFALIGSAAFAAGVTRAVSTAVIVFELSGQNHLRLPLGVALMISYFIANRFTKGVYDALTDTNGTPHLEEV 228
            +L+PWEFA+IG+AAF++GVTRAVSTAVIVFELSGQNHLRLP+ VAL+++YF+ANRFTK VYD L DTNGTP L E+
Sbjct:  557 SLEPWEFAVIGAAAFSSGVTRAVSTAVIVFELSGQNHLRLPISVALLLAYFVANRFTKNVYDELLDTNGTPSLPEL 632          
BLAST of mRNA_M-pyrifera_M_contig87711.20376.1 vs. uniprot
Match: A0A7S2DMH5_9STRA (Chloride channel protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DMH5_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.550e-27
Identity = 53/72 (73.61%), Postives = 64/72 (88.89%), Query Frame = 1
Query:    4 LKPWEFALIGSAAFAAGVTRAVSTAVIVFELSGQNHLRLPLGVALMISYFIANRFTKGVYDALTDTNGTPHL 219
            L+PWEFA++GSAAF+AGVTR VSTAVI+FEL G+ HLRLPL VA++++YFIANRF K +YDAL DTNGTP L
Sbjct:  100 LEPWEFAVVGSAAFSAGVTRVVSTAVILFELVGEPHLRLPLSVAILVAYFIANRFCKNIYDALIDTNGTPTL 171          
BLAST of mRNA_M-pyrifera_M_contig87711.20376.1 vs. uniprot
Match: A0A7S0SPL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SPL1_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.940e-27
Identity = 47/76 (61.84%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    1 NLKPWEFALIGSAAFAAGVTRAVSTAVIVFELSGQNHLRLPLGVALMISYFIANRFTKGVYDALTDTNGTPHLEEV 228
            ++ PWEFA++G+AA+A GVTRA+STAVIVFELSG  HLRLP+ +A++ SYF+ NR +K +YD L+DTNGTP L ++
Sbjct:  110 SIPPWEFAVVGAAAYATGVTRAISTAVIVFELSGLRHLRLPISLAVLASYFVGNRLSKNIYDVLSDTNGTPFLPDL 185          
BLAST of mRNA_M-pyrifera_M_contig87711.20376.1 vs. uniprot
Match: A0A7S3NNS7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNS7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.780e-24
Identity = 48/76 (63.16%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    1 NLKPWEFALIGSAAFAAGVTRAVSTAVIVFELSGQNHLRLPLGVALMISYFIANRFTKGVYDALTDTNGTPHLEEV 228
               PWE+A+IG+AAFAAGVTRA+STAVI  EL+G+NHLR+PL ++ ++++FI NRFTK +YDAL DTNGTP L ++
Sbjct:  486 QFMPWEYAVIGAAAFAAGVTRALSTAVIFLELAGENHLRIPLLLSTLVAHFIGNRFTKPIYDALIDTNGTPTLPDL 561          
BLAST of mRNA_M-pyrifera_M_contig87711.20376.1 vs. uniprot
Match: A0A835YU91_9STRA (Chloride channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU91_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.910e-23
Identity = 46/73 (63.01%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 NLKPWEFALIGSAAFAAGVTRAVSTAVIVFELSGQNHLRLPLGVALMISYFIANRFTKGVYDALTDTNGTPHL 219
              +PWEFA+IG+AA +  +TRAVSTA+IVFE+SG+N LRLPLG+A++I++ IA+RFTKG YD+L DTN  P+L
Sbjct:  442 TFQPWEFAVIGAAALSGSITRAVSTAIIVFEMSGENCLRLPLGLAVLIAHTIASRFTKGAYDSLVDTNSAPYL 514          
BLAST of mRNA_M-pyrifera_M_contig87711.20376.1 vs. uniprot
Match: A0A7S3GUC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GUC0_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.770e-21
Identity = 41/73 (56.16%), Postives = 60/73 (82.19%), Query Frame = 1
Query:   10 PWEFALIGSAAFAAGVTRAVSTAVIVFELSGQNHLRLPLGVALMISYFIANRFTKGVYDALTDTNGTPHLEEV 228
            PWE+AL+G+AAF+ GVTRA+STAVI+FEL+ Q HL LP+ V ++ ++F+ NRFTK VYD L + NG P+++++
Sbjct:   83 PWEYALLGAAAFSTGVTRAISTAVIIFELACQPHLGLPISVVVLTAHFVGNRFTKNVYDVLMEANGGPYMDDL 155          
BLAST of mRNA_M-pyrifera_M_contig87711.20376.1 vs. uniprot
Match: A0A3R7JU70_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JU70_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.390e-17
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 NLKPWEFALIGSAAFAAGVTRAVSTAVIVFELSGQNHLRLPLGVALMISYFIANRFTKGVYDALTDTNGTPHLEEV 228
            N KP+EFA+IG+ AF++GVT AVSTAVI+ E+S  + L LP+ VA++ +YF A RFT+ VYD L  T+  P L+++
Sbjct:  125 NYKPFEFAIIGAGAFSSGVTHAVSTAVIIMEISHTDGLNLPVSVAILAAYFTAKRFTENVYDVLIVTSNLPRLKKL 200          
BLAST of mRNA_M-pyrifera_M_contig87711.20376.1 vs. uniprot
Match: A0A3F2RSG3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RSG3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.770e-17
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 NLKPWEFALIGSAAFAAGVTRAVSTAVIVFELSGQNHLRLPLGVALMISYFIANRFTKGVYDALTDTNGTPHLEEV 228
            N KP+EFA+IG+ AF++GVT AVSTAVI+ E+S  + L LP+ VA++ +YF A RFT+ VYD L  T+  P L+++
Sbjct:  234 NYKPFEFAIIGAGAFSSGVTHAVSTAVIIMEISHTDGLNLPVSVAILAAYFTAKRFTENVYDVLIVTSNLPRLKKL 309          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87711.20376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJI7_ECTSI1.110e-3692.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K923_9PHAE4.250e-3689.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7UA92_9STRA5.840e-3176.32Chloride channel protein n=2 Tax=Monodopsidaceae T... [more]
A0A7S2DMH5_9STRA1.550e-2773.61Chloride channel protein n=1 Tax=Dictyocha speculu... [more]
A0A7S0SPL1_9STRA2.940e-2761.84Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S3NNS7_9STRA1.780e-2463.16Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A835YU91_9STRA2.910e-2363.01Chloride channel n=1 Tax=Tribonema minus TaxID=303... [more]
A0A7S3GUC0_9STRA2.770e-2156.16Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A3R7JU70_9STRA4.390e-1752.63Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A3F2RSG3_9STRA4.770e-1752.63Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87711contigM-pyrifera_M_contig87711:412..639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue8.9e-31
Seed eggNOG ortholog2880.D8LJI7
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0008150,GO:0008308,GO:0008509,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015318,GO:0015698,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0034220,GO:0051179,GO:0051234,GO:0055085,GO:0098656,GO:0098660,GO:0098661,GO:1902476
EggNOG free text desc.voltage-gated chloride channel activity
EggNOG OGsCOG0038@1,KOG0476@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.59662-CDS-M-pyrifera_M_contig87711:411..6391622816786.59662-CDS-M-pyrifera_M_contig87711:411..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87711 412..639 -
1692278178.0870764-CDS-M-pyrifera_M_contig87711:411..6391692278178.0870764-CDS-M-pyrifera_M_contig87711:411..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87711 412..639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87711.20376.1prot_M-pyrifera_M_contig87711.20376.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87711 412..639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87711.20376.1

>prot_M-pyrifera_M_contig87711.20376.1 ID=prot_M-pyrifera_M_contig87711.20376.1|Name=mRNA_M-pyrifera_M_contig87711.20376.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
NLKPWEFALIGSAAFAAGVTRAVSTAVIVFELSGQNHLRLPLGVALMISY
FIANRFTKGVYDALTDTNGTPHLEEV
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mRNA from alignment at M-pyrifera_M_contig87711:412..639-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87711.20376.1 ID=mRNA_M-pyrifera_M_contig87711.20376.1|Name=mRNA_M-pyrifera_M_contig87711.20376.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig87711:412..639- (Macrocystis pyrifera P11B4 male)
AACCTCAAGCCGTGGGAGTTCGCGCTGATCGGATCTGCGGCGTTCGCGGC CGGGGTGACGCGCGCCGTGAGCACGGCCGTGATCGTGTTCGAGCTGTCGG GGCAGAATCACCTCCGGCTGCCGCTGGGCGTCGCTCTGATGATCTCGTAC TTCATCGCCAATCGCTTCACGAAGGGGGTGTACGACGCACTCACGGACAC CAACGGGACCCCGCATTTGGAAGAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87711:412..639-

>mRNA_M-pyrifera_M_contig87711.20376.1 ID=mRNA_M-pyrifera_M_contig87711.20376.1|Name=mRNA_M-pyrifera_M_contig87711.20376.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig87711:412..639- (Macrocystis pyrifera P11B4 male)
AACCTCAAGCCGTGGGAGTTCGCGCTGATCGGATCTGCGGCGTTCGCGGC
CGGGGTGACGCGCGCCGTGAGCACGGCCGTGATCGTGTTCGAGCTGTCGG
GGCAGAATCACCTCCGGCTGCCGCTGGGCGTCGCTCTGATGATCTCGTAC
TTCATCGCCAATCGCTTCACGAAGGGGGTGTACGACGCACTCACGGACAC
CAACGGGACCCCGCATTTGGAAGAGGTGAACCTCAAGCCGTGGGAGTTCG
CGCTGATCGGATCTGCGGCGTTCGCGGCCGGGGTGACGCGCGCCGTGAGC
ACGGCCGTGATCGTGTTCGAGCTGTCGGGGCAGAATCACCTCCGGCTGCC
GCTGGGCGTCGCTCTGATGATCTCGTACTTCATCGCCAATCGCTTCACGA
AGGGGGTGTACGACGCACTCACGGACACCAACGGGACCCCGCATTTGGAA
GAGGTG
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