mRNA_M-pyrifera_M_contig8637.20115.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8637.20115.1
Unique NamemRNA_M-pyrifera_M_contig8637.20115.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8637.20115.1 vs. uniprot
Match: D8LMZ2_ECTSI (COG2350: Uncharacterized protein conserved in bacteria n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ2_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 8.340e-22
Identity = 45/84 (53.57%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    4 IFRVRNVGSSLSDEDKIQTGSEDDMRRLMYDLDPDSDEQGPMYFGTDGMDGPEQIWEKAPQEVRFDQCYLAFCVDREETKEEPK 255
            + R++NV +++ +ED++   S++ MRRLM+D+DPDS ++GPMYFG  GM   E    K P+EVRF Q YLAFCVDREET++E K
Sbjct:  115 LLRLKNVAAAVPEEDRVDDHSDEAMRRLMFDMDPDSKDKGPMYFGDAGMYTDEVNHVKYPEEVRFPQSYLAFCVDREETEDEDK 198
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BLAST of mRNA_M-pyrifera_M_contig8637.20115.1 vs. uniprot
Match: A0A6H5JNB6_9PHAE (YCII domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.690e-16
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   55 QTGSEDDMRRLMYDLDPDSDEQGPMYFGTDGMDGPEQIWEKAPQEVRFDQCYLAFCVDREETKEEPK 255
            Q  S++ MRRLM+D+DPDS ++GPMYFG  GM   E    K P+EVRF Q YLAFCVDREET++E K
Sbjct:   16 QDHSDEAMRRLMFDMDPDSKDKGPMYFGDAGMYTDEVNHVKYPEEVRFPQSYLAFCVDREETEDEDK 82
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8637.20115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMZ2_ECTSI8.340e-2253.57COG2350: Uncharacterized protein conserved in bact... [more]
A0A6H5JNB6_9PHAE1.690e-1661.19YCII domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8637contigM-pyrifera_M_contig8637:7300..11052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue7.4e-18
Seed eggNOG ortholog2880.D8LMZ2
Hectar predicted targeting categoryother localisation
EggNOG OGs2E392@1,2SAD8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size256
Cds size255
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8637.20115.1prot_M-pyrifera_M_contig8637.20115.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8637 7300..11052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.6109056-CDS-M-pyrifera_M_contig8637:7299..73561622816773.6109056-CDS-M-pyrifera_M_contig8637:7299..7356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8637 7300..7356 +
1692278170.192264-CDS-M-pyrifera_M_contig8637:7299..73561692278170.192264-CDS-M-pyrifera_M_contig8637:7299..7356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8637 7300..7356 +
1622816773.621747-CDS-M-pyrifera_M_contig8637:9142..92201622816773.621747-CDS-M-pyrifera_M_contig8637:9142..9220Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8637 9143..9220 +
1692278170.2087018-CDS-M-pyrifera_M_contig8637:9142..92201692278170.2087018-CDS-M-pyrifera_M_contig8637:9142..9220Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8637 9143..9220 +
1622816773.6323166-CDS-M-pyrifera_M_contig8637:10932..110521622816773.6323166-CDS-M-pyrifera_M_contig8637:10932..11052Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8637 10933..11052 +
1692278170.2222369-CDS-M-pyrifera_M_contig8637:10932..110521692278170.2222369-CDS-M-pyrifera_M_contig8637:10932..11052Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8637 10933..11052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8637.20115.1

>prot_M-pyrifera_M_contig8637.20115.1 ID=prot_M-pyrifera_M_contig8637.20115.1|Name=mRNA_M-pyrifera_M_contig8637.20115.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
KIFRVRNVGSSLSDEDKIQTGSEDDMRRLMYDLDPDSDEQGPMYFGTDGM
DGPEQIWEKAPQEVRFDQCYLAFCVDREETKEEPK
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mRNA from alignment at M-pyrifera_M_contig8637:7300..11052+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8637.20115.1 ID=mRNA_M-pyrifera_M_contig8637.20115.1|Name=mRNA_M-pyrifera_M_contig8637.20115.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3753bp|location=Sequence derived from alignment at M-pyrifera_M_contig8637:7300..11052+ (Macrocystis pyrifera P11B4 male)
AAAATCTTCCGCGTGAGGAACGTCGGATCGTCCCTGAGCGACGAGGACAA
AATCCAGGTGCGTGCGTGCGTGCGTTCATGCCTGTGGAAAGGCCAGACTG
TGAAATGGCTTGAATGGTTAAAATTTAGAAATGGTGAGTTTTGAATGATT
GCATTTGCATTGTTTGAACGGTTGGAATTCGAACGATTGGAATGTTGATT
TTTCCGATGGATGAAATTGTTGCATGGTTGAACTGTTCAATTGTAATTGT
TCACACCTCTAACAGATCATTATCTATCTGATCTGTCTACAGTAGATGAT
CTAGTTCCTCACCGGCCGTTGAGGGAGATTGTGCAGGATCTATCTGCCTT
ATATATAGGGCAGATCCAACCCAGGAAACATGTGCTACAGTAGTTCATGC
ACCCTATACGGTTTCCACCCGGCGACATGAGCTAGATCATACAGATCACA
CAGATCAGGAATATATCTGGGCCGAAAGATCTAGATCATGAAGTGGGAAT
CGATGATCTAGAGATGATCTGTTCGAGGGGTGGAATGGTCGAATTGTGTC
GCCCGAGCGGCTCTTTGCCCCCGCCCCAATAATCGCAGAAGAACATAACG
ACATACAGTATGTACACGATGAACCTTGCCGAACGCGTCGTAGCGACATT
GCGACGAAAAGAGTAGTTGTTGTTGTTGCTGAAGCATGGGGTGTCTGTTT
TTTGTTGCGCGGTTCGCCGCGTGTGTGGTCCGAGCGCTGCCGGTGCTCTC
TTTTGCTTTGCTTTCTTCTTTTGCCCCCTTGTTGTGTGCCGAATGGCTCG
CTTGGTGTATGATATTGCGAGCAAAATGTGCTTCAATTTGCGTGCGAAGG
GCACTATTACGGAGGACCATAGTTAATAGGACCTACGGTACACACGAATA
CCCATATATTTACTTATTTTTACTAACGATATTTGGTCCTATTTACTACG
GTCCCCGCAAATAGTGGTGCCGACGCCTTATACGACAGGGGTAGCTTTTT
CTGGACAAAATACTTGTGATTTGGCTGGCCTTCTCAACCCAATATCGTCG
GAAATGTACGATTTTTAGTAAACAACAACAGTATTCGAAATGTGCTCTAG
TGCTTGTGCGCTGCTTTGGGATGCGTTCTTCGGGGTTTGCATTTATAGCT
TTTCTCCAAATCAGTGTCTGGGTGACTTGATCATGACTTGTTTATGGTGT
AAAGCTCCTCAAGTCAAGAGCCTCGTAAAAATGAGGTGTTGGCCCTCTGC
CGTTCAGTTCCTCGGTTGCAATGGTTGAGGAGCCCCCCCCCACCCCCCCA
ATGTCACTCCCGAATATTTTTGGCCGAAAAAAGGTACAGGCACGCCTACA
TCGTACGTACGTAGCAAGCGTCCCCCAATCATCATCGCCTAACAGCTCCT
CTCCGGGGGGGGTAGTAGTGGGTACGTGCCGTCCACCCCGTCGTATCGTC
GGAATCCCATTGGGGTTTCACATTATTTTTTTTCGTGATGTGACCATTAT
TTATCGGGTTGCACTTTTCGTTTTTCTTGACATGAGTGTTTGGATGACGT
ACTAAGAGTATAGAGCTCATCATGTGAAAACGGCGTCAGAAAAAGTTGGG
CGCTACCCCTCCCCATAGCCCGCGCCTGCCCGGGTACTAAATTGTTTACC
CCCGCCCCTCGTCCCTCCCCTGTCCCCCGTCACGTGCATGCCTTCCGTCT
CTCCCCCGCCCCCCTCTTGCCGCCGCCGCTGTTTCTTTTTGCCTCGGTGC
GTCGTTGGTTGTTGGTTACGTGTTTGCTTGTTCGTTCCAATATTTCGTTC
GTCGGTTGGTCCGTTGCCTGTTTTATTTTTTTGGTGTGGTCAGACTGGCA
GCGAAGATGACATGAGGAGGCTTATGTACGACCTCGACCCCGACAGCGAC
GAGCAGGGGCCGATGTACTTCGTGAGTTGGGGGAGGGTTCCATCTCGTCC
TGTCTCGATTTCTGTCTATAGATGCCGGCATCACCGGGGGGGTGTTAGAT
AGTACACCCCCCACACACAACAGGACACCTGGTGATACTACTGTATGTTG
AAACATCAACATGTTATCACCGGGGTGTGCTATATTCCGTGTCAGGGTTT
GACCTTTTTTGGTGGTGTGATCGTTTTGAGTGGTTTGATGGTTCTAATGG
GGTTTGATCGTTAGGATCGCTTGATCGCGTGTACTACTCTTCACTGTTTG
AAGTCTTGATGACTGGATCGCTATGGTCGTTGGATTGCGATGTTTGGTCG
TTGCTTGGTATCTTGTTTGGTCGTTTCGATGGTCGATTGTTTTAACCCCG
TGTCCACGTTGGATCGCCGTTTTTTTTTTTTTTTCGTGAAGCTTTTTGAC
AATTTGATCTTCTGCCTTCCACTCTTTTAAAAACAGTATCGTTGGGTTGC
TGAATCGTTGAGTCGTTCGCCCGCTGGCCACGTGTCGTTTGGGTGTGGTG
TGCCCACCACCACAGTAGTACGGTGATTGGAGCTTCGTCTTCGAAGGATA
GGATGGGGTGATATAGTGGCATGTTTGGTTTGGGGCGACGGGGGTGATTG
GTGTGCTTTGCAGTGAGGCGGCGTCATGTCTCGTTTGGTCGTCCGGCCCG
TGTGACATGAAAAATCAACAGCAACAGCAACATCACGCACCTGGTACCTT
GGAAGATGTGCCGATACCAGCTTTGTGTTTTTTTTTTTTGCGATGCGAGT
CGACGAGGGAAGAAGGGGCTCGAAAATGCAAGGCAAGAACTGTTGCGGGG
AGGAGGGAAAAACACGAAAGCCTACGACACTTTGTGACCCCGGGTCTGAG
TTACGACTGGGAACGAGAAAAGAAAAGAATGGCGAAGGTAATAAATGGGA
TGACAAATGATAACAAAACAAGGAAAAAAAACGTGTGATCCTTTCGTCGG
TTTTCTTCAACATTCTTGTTCCAGCTTTATCATGATCTATTACGGGGGTC
CATAGTTAACAGGACCTATGGCATACTTAAAAACCTATATATTTAGGTAT
TTTTACTAACAATATTTGATCCTGTTAACTATGGACCCCCGTAATAGCAT
TTGCTTTTTTGTGTTTATACGAGTATTTGGTTCTGCAGTGCCTTAGTACG
AATCTGTTTTTTTTTTTTTTGTAGCTATAGTCGTACTCGTATAATAGAGC
ATACGCGGGCAAGGAGAAGATATTATTAATAGAGGAGACAGATGCTCTTC
GGTCTTGCATTTGTCTGGTCAACTTTCGTGCTACGTACCGCCGAACACGG
TCACGGGTTTATGATAAGTTGTTGTGGTTGTCCTCACGTAAAACCGTTAT
TTCTGCCCAACGGCATGAGTACACCCGGTGTCCGTCCTGATTTCTTCATC
CTAGAGAGATGATGGTACAAATTAGGCGGTCACGGACTGCGAGACAGAAA
AAAAAACAAAATAATTGCAGACGGAGCAAGCAAGCTCGTAAGCAAAATAA
ACTAACCAAACGTACCGGGTACGAGAACACATCCAAGCAACAAACAACCT
ACCAAGAAAAACAAGAACTCTTGATTAAAAGAAAAAGTTAAAAACGTCAT
TGTGCGCTCCTTGCTGTACATTAAATATTAATACTCGTGCTGTTTCGCTA
CCACTTTTTCTCGTTTGTTTTTGTGTGGACTAGGGTACCGACGGGATGGA
CGGGCCGGAACAAATCTGGGAGAAGGCTCCGCAGGAGGTCCGCTTTGATC
AGTGCTATCTCGCGTTTTGCGTCGACAGGGAGGAGACGAAGGAAGAGCCC
AAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8637:7300..11052+

>mRNA_M-pyrifera_M_contig8637.20115.1 ID=mRNA_M-pyrifera_M_contig8637.20115.1|Name=mRNA_M-pyrifera_M_contig8637.20115.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig8637:7300..11052+ (Macrocystis pyrifera P11B4 male)
AAAATCTTCCGCGTGAGGAACGTCGGATCGTCCCTGAGCGACGAGGACAA
AATCCAGAAAATCTTCCGCGTGAGGAACGTCGGATCGTCCCTGAGCGACG
AGGACAAAATCCAGACTGGCAGCGAAGATGACATGAGGAGGCTTATGTAC
GACCTCGACCCCGACAGCGACGAGCAGGGGCCGATGTACTTCACTGGCAG
CGAAGATGACATGAGGAGGCTTATGTACGACCTCGACCCCGACAGCGACG
AGCAGGGGCCGATGTACTTCGGTACCGACGGGATGGACGGGCCGGAACAA
ATCTGGGAGAAGGCTCCGCAGGAGGTCCGCTTTGATCAGTGCTATCTCGC
GTTTTGCGTCGACAGGGAGGAGACGAAGGAAGAGCCCAAGGGTACCGACG
GGATGGACGGGCCGGAACAAATCTGGGAGAAGGCTCCGCAGGAGGTCCGC
TTTGATCAGTGCTATCTCGCGTTTTGCGTCGACAGGGAGGAGACGAAGGA
AGAGCCCAAG
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