mRNA_M-pyrifera_M_contig85541.19939.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85541.19939.1
Unique NamemRNA_M-pyrifera_M_contig85541.19939.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85541.19939.1 vs. uniprot
Match: A0A2E5YEK6_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E5YEK6_9DELT)

HSP 1 Score: 250 bits (638), Expect = 1.260e-80
Identity = 124/222 (55.86%), Postives = 157/222 (70.72%), Query Frame = 1
Query:    4 PTLRHAPWSQIGQGTATVGASTGWAFYEANIAASGQSGVLAGEEGDDDVALTPNYGGALKASYFVADNLALGGIVELRSFDPDPAMPLSAELVADDFETIHWLITSRYFFDPFGASLRWKPYIGLDFSYIDEVDFGSVTVNYPAPFPSEEIDILAGSYTTFSPLVGASYLWTDTSTIDFGAFYEITDKPGQTTLTFPNLGNSTADVLVEPEGLIVFFGMTFY 669
            P L    WS +G+GT++ G S+GWAFY A I A+G  GVLAGE G DD  L P YGGA K ++F  D++++G + ELRSF+ DP  PLSA L AD FET+H+LI+ RY+ DP G   R +P++G+D SYI  VDFGSV V+YP  FP+E +DI A  Y + S +VGASYLW D  ++DFGAFYE     G T LTFPNLG +TA+V V PEGLI FFG++FY
Sbjct:   24 PPLEREDWSDMGEGTSSYGVSSGWAFYGAEIQAAGTGGVLAGESGVDDTDLAPRYGGAFKVNHFFTDDISVGLVAELRSFEADPIAPLSATLTADPFETMHFLISGRYWLDPRGKENRMRPFVGMDLSYIPGVDFGSVRVDYPT-FPTEYVDIDADGYYSASAVVGASYLWNDHMSVDFGAFYEFPLTAGGTELTFPNLGGATAEVEVAPEGLICFFGLSFY 244          
BLAST of mRNA_M-pyrifera_M_contig85541.19939.1 vs. uniprot
Match: A0A800MEC4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800MEC4_9BACT)

HSP 1 Score: 246 bits (628), Expect = 3.630e-79
Identity = 120/216 (55.56%), Postives = 153/216 (70.83%), Query Frame = 1
Query:   22 PWSQIGQGTATVGASTGWAFYEANIAASGQSGVLAGEEGDDDVALTPNYGGALKASYFVADNLALGGIVELRSFDPDPAMPLSAELVADDFETIHWLITSRYFFDPFGASLRWKPYIGLDFSYIDEVDFGSVTVNYPAPFPSEEIDILAGSYTTFSPLVGASYLWTDTSTIDFGAFYEITDKPGQTTLTFPNLGNSTADVLVEPEGLIVFFGMTFY 669
            PW+ IG+G+ TVG STGWAFY A I A G  GVLAGE G D   LTPNYG ALK + F+ D+ +LG + ELR+FD DP  PLSA L AD F T H+L++SRY+  P G + RWKP++GLD  YI EVDFG+V V+YP   P+E+++I+  SY T   + GASY+     ++D GAFYE    PG+ TL FPNLGN+TADV V PEGL++F G+T+Y
Sbjct:   25 PWAGIGKGSTTVGTSTGWAFYGAEIEAEGTGGVLAGETGTDHTDLTPNYGAALKVNRFITDDFSLGLVYELRNFDADPIAPLSAVLTADAFTTHHFLLSSRYWLSPKGDAGRWKPFVGLDLGYIPEVDFGAVDVSYPGAVPNEDVNIVGSSYWTLGVVAGASYMLEKGLSLDIGAFYEFALTPGEDTLIFPNLGNATADVEVWPEGLVIFGGLTWY 240          
BLAST of mRNA_M-pyrifera_M_contig85541.19939.1 vs. uniprot
Match: A0A800G3F5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800G3F5_9BACT)

HSP 1 Score: 207 bits (527), Expect = 1.170e-63
Identity = 111/222 (50.00%), Postives = 139/222 (62.61%), Query Frame = 1
Query:   25 WSQIGQGTATVGASTGWAFYEANIAASGQSGVLAGE----EGDDDVALTPNYGGALKASYFVADNLALGGIVELRSFDPDPAMPLSAELVADDFETIHWLITSRYFFDPFGASLRWKPYIGLDFSYIDEVDFGSVTVNYPAP--FPSEEIDILAGSYTTFSPLVGASYLWTDTSTIDFGAFYEITDKPGQTTLTFPNLGNSTADVLVEPEGLIVFFGMTFYF 672
            WS  G+GT ++G S+GWAFY A I A G SG L  E     G D+  L P YGGA+K  Y V D+L+LG + E+R+F+ DP  PL+A L A  F T H L+TSRY   PFG   RW+P+ G+D  YI  VDFGSV V YPA    PSE +DI A SY +   + GASYL  D  + D GAFYE    PG+  L   NLG + AD+ V P GL+VFFG+T++F
Sbjct:   35 WSDKGEGTRSLGTSSGWAFYGAEIEAEGVSGALVDEGVPDTGTDNTDLAPRYGGAIKYGYSVTDSLSLGFMAEVRNFEADPIAPLTATLTAKPFSTYHLLLTSRYHLAPFGHEDRWRPFFGVDLGYIPGVDFGSVDVAYPAETGIPSEVVDIKASSYWSMGAVGGASYLLRDNLSFDMGAFYEWALTPGEKRLKLENLGGAEADIEVWPGGLLVFFGLTWFF 256          
BLAST of mRNA_M-pyrifera_M_contig85541.19939.1 vs. uniprot
Match: A0A518D4Q5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518D4Q5_9BACT)

HSP 1 Score: 152 bits (384), Expect = 1.050e-41
Identity = 90/222 (40.54%), Postives = 123/222 (55.41%), Query Frame = 1
Query:   22 PWSQIGQGTATVGASTGWAFYEANIAASGQSGVLAGEEGDDDVALTPNYGGALKASYFVADNLALGGIVELRSFDPDPAMPLSAELVADDFETIHWLITSRYFFDPFGASLRWKPYIGLDFSYIDEVDFGSVTVNYPAPFPSEEIDILAGSYTTFSPLVGASYLWTDTSTIDFGAFYE--ITDKPGQTTLTFPN-LGNST---ADVLVEPEGLIVFFGMTFY 669
            PW     G  ++G STGWA YEA +    ++G      G D   L P  G ALK  YF+  N+ALG IVE R+FDP+   PLS+++  DD+ T H+L +SR+F DP G   RWK ++G D  Y+D+V+  + TV Y AP   E + +   SY T   + G SYL +D  + +FGAFYE  +        L  P+ LG +     D  V PEGLI F  +T+Y
Sbjct:   73 PWENADAGAHSLGVSTGWALYEAEVRLQDRNGTPDLGSGTDTTDLDPTGGFALKYQYFLNSNVALGAIVEQRTFDPEVVRPLSSDIDGDDYTTYHYLFSSRFFTDPLGEDGRWKAFLGADLGYVDQVELDA-TVTY-APGFVERVTLNGDSYFTLGLVGGLSYLISDRISFEFGAFYEWPLDSSDDTLVLNIPDGLGGTNPNNVDGQVYPEGLIGFLTLTYY 292          
BLAST of mRNA_M-pyrifera_M_contig85541.19939.1 vs. uniprot
Match: A0A518BSP1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BSP1_9BACT)

HSP 1 Score: 138 bits (347), Expect = 4.780e-37
Identity = 80/218 (36.70%), Postives = 121/218 (55.50%), Query Frame = 1
Query:   34 IGQGTATVGASTGWAFYEANIAASGQSGVLAGEEGDDDVALTPNYGGALKASYFVADNLALGGIVELRSFDPDPAMPLSAELVADDFETIHWLITSRYFFDPFGASLRWKPYIGLDFSYIDEVDFGSVTVNYPAPFPSEEIDILAGSYTTFSPLVGASYLWTDTSTIDFGAFYEIT--DKPGQTTLTFPNLGN----STADVLVEPEGLIVFFGMTFY 669
            +G+G+ T+G S+GW  + A +A   +SG      G D   L P  GGA K +YF+ DN ALGGIVE RSF  DP  PL++++  D++ +IH+L ++RY+ DP  A+ R K + G+D  YID +   + TV Y   F  E + +    Y T   + GAS+   D+ +++ GAF+E+          L  P  G     +T    V PEG+I F G+T++
Sbjct:    1 MGEGSHTLGVSSGWGIFNAKVALEDKSGSPELGSGTDYTKLQPIGGGAAKYNYFLTDNFALGGIVEFRSFKADPVEPLASKISPDEYTSIHYLFSTRYYTDPLQANPRMKLFGGIDLGYIDGISLDA-TVQYSPSF-QERVTLEGDEYWTLGFVGGASFWLADSLSLELGAFWEVALDSTDDDLVLNIPQGGGGTDANTVSGKVTPEGVIFFLGLTYF 216          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85541.19939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2E5YEK6_9DELT1.260e-8055.86Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A800MEC4_9BACT3.630e-7955.56Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A800G3F5_9BACT1.170e-6350.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518D4Q5_9BACT1.050e-4140.54Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518BSP1_9BACT4.780e-3736.70Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85541contigM-pyrifera_M_contig85541:23..697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size675
Cds size675
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816764.8406765-CDS-M-pyrifera_M_contig85541:22..6971622816764.8406765-CDS-M-pyrifera_M_contig85541:22..697Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85541 23..697 -
1692278164.903828-CDS-M-pyrifera_M_contig85541:22..6971692278164.903828-CDS-M-pyrifera_M_contig85541:22..697Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85541 23..697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85541.19939.1prot_M-pyrifera_M_contig85541.19939.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85541 23..697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85541.19939.1

>prot_M-pyrifera_M_contig85541.19939.1 ID=prot_M-pyrifera_M_contig85541.19939.1|Name=mRNA_M-pyrifera_M_contig85541.19939.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=225bp
APTLRHAPWSQIGQGTATVGASTGWAFYEANIAASGQSGVLAGEEGDDDV
ALTPNYGGALKASYFVADNLALGGIVELRSFDPDPAMPLSAELVADDFET
IHWLITSRYFFDPFGASLRWKPYIGLDFSYIDEVDFGSVTVNYPAPFPSE
EIDILAGSYTTFSPLVGASYLWTDTSTIDFGAFYEITDKPGQTTLTFPNL
GNSTADVLVEPEGLIVFFGMTFYF*
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mRNA from alignment at M-pyrifera_M_contig85541:23..697-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85541.19939.1 ID=mRNA_M-pyrifera_M_contig85541.19939.1|Name=mRNA_M-pyrifera_M_contig85541.19939.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=675bp|location=Sequence derived from alignment at M-pyrifera_M_contig85541:23..697- (Macrocystis pyrifera P11B4 male)
GCGCCGACCCTCCGGCACGCGCCTTGGTCCCAGATCGGCCAGGGCACGGC GACCGTCGGGGCCTCGACCGGCTGGGCCTTCTACGAGGCCAACATCGCGG CTTCGGGCCAGTCCGGCGTGCTCGCCGGTGAGGAAGGCGACGACGACGTC GCCCTGACGCCGAACTACGGCGGCGCCCTCAAGGCCAGCTACTTCGTGGC CGACAACCTCGCCCTCGGGGGCATCGTCGAGCTGCGCAGCTTCGACCCGG ACCCGGCGATGCCGCTGTCCGCCGAGCTCGTCGCCGACGACTTCGAGACG ATCCACTGGCTGATCACCAGCCGCTACTTCTTCGACCCGTTCGGAGCGAG CCTGCGCTGGAAGCCCTACATCGGCCTCGACTTCAGCTACATCGACGAGG TCGACTTCGGCTCGGTGACCGTCAACTATCCGGCGCCGTTCCCCTCCGAG GAGATCGACATCCTGGCCGGCTCGTACACGACGTTCTCGCCGCTGGTCGG CGCGTCGTACCTGTGGACGGACACCTCGACGATCGACTTCGGCGCGTTCT ACGAGATCACCGACAAGCCCGGCCAGACGACGCTGACGTTCCCGAACCTC GGCAACTCGACCGCCGACGTGCTGGTCGAACCCGAAGGCCTGATCGTCTT CTTCGGGATGACCTTCTACTTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85541:23..697-

>mRNA_M-pyrifera_M_contig85541.19939.1 ID=mRNA_M-pyrifera_M_contig85541.19939.1|Name=mRNA_M-pyrifera_M_contig85541.19939.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1350bp|location=Sequence derived from alignment at M-pyrifera_M_contig85541:23..697- (Macrocystis pyrifera P11B4 male)
GCGCCGACCCTCCGGCACGCGCCTTGGTCCCAGATCGGCCAGGGCACGGC
GACCGTCGGGGCCTCGACCGGCTGGGCCTTCTACGAGGCCAACATCGCGG
CTTCGGGCCAGTCCGGCGTGCTCGCCGGTGAGGAAGGCGACGACGACGTC
GCCCTGACGCCGAACTACGGCGGCGCCCTCAAGGCCAGCTACTTCGTGGC
CGACAACCTCGCCCTCGGGGGCATCGTCGAGCTGCGCAGCTTCGACCCGG
ACCCGGCGATGCCGCTGTCCGCCGAGCTCGTCGCCGACGACTTCGAGACG
ATCCACTGGCTGATCACCAGCCGCTACTTCTTCGACCCGTTCGGAGCGAG
CCTGCGCTGGAAGCCCTACATCGGCCTCGACTTCAGCTACATCGACGAGG
TCGACTTCGGCTCGGTGACCGTCAACTATCCGGCGCCGTTCCCCTCCGAG
GAGATCGACATCCTGGCCGGCTCGTACACGACGTTCTCGCCGCTGGTCGG
CGCGTCGTACCTGTGGACGGACACCTCGACGATCGACTTCGGCGCGTTCT
ACGAGATCACCGACAAGCCCGGCCAGACGACGCTGACGTTCCCGAACCTC
GGCAACTCGACCGCCGACGTGCTGGTCGAACCCGAAGGCCTGATCGTCTT
CTTCGGGATGACCTTCTACTTCTGAGCGCCGACCCTCCGGCACGCGCCTT
GGTCCCAGATCGGCCAGGGCACGGCGACCGTCGGGGCCTCGACCGGCTGG
GCCTTCTACGAGGCCAACATCGCGGCTTCGGGCCAGTCCGGCGTGCTCGC
CGGTGAGGAAGGCGACGACGACGTCGCCCTGACGCCGAACTACGGCGGCG
CCCTCAAGGCCAGCTACTTCGTGGCCGACAACCTCGCCCTCGGGGGCATC
GTCGAGCTGCGCAGCTTCGACCCGGACCCGGCGATGCCGCTGTCCGCCGA
GCTCGTCGCCGACGACTTCGAGACGATCCACTGGCTGATCACCAGCCGCT
ACTTCTTCGACCCGTTCGGAGCGAGCCTGCGCTGGAAGCCCTACATCGGC
CTCGACTTCAGCTACATCGACGAGGTCGACTTCGGCTCGGTGACCGTCAA
CTATCCGGCGCCGTTCCCCTCCGAGGAGATCGACATCCTGGCCGGCTCGT
ACACGACGTTCTCGCCGCTGGTCGGCGCGTCGTACCTGTGGACGGACACC
TCGACGATCGACTTCGGCGCGTTCTACGAGATCACCGACAAGCCCGGCCA
GACGACGCTGACGTTCCCGAACCTCGGCAACTCGACCGCCGACGTGCTGG
TCGAACCCGAAGGCCTGATCGTCTTCTTCGGGATGACCTTCTACTTCTGA
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