mRNA_M-pyrifera_M_contig84957.19800.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84957.19800.1
Unique NamemRNA_M-pyrifera_M_contig84957.19800.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84957.19800.1 vs. uniprot
Match: A0A061S375_9CHLO (Light-gated proton channel rhodopsin n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S375_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 7.680e-5
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:    1 VYVDDGEVSRRFFPALRYLGWLVTCPILVAHMHGLPIGMKHKDPRRTLSALVVNQVMTCFGVASVLF-GGTARIVLFVI 234
            VY   G V+    P LRY+ WL+TCP+++ H+  L  G+  +   RT+  L  +Q   CFGV + L   G  +I+ FVI
Sbjct:  102 VYSVFGPVT----PWLRYIEWLLTCPVILIHLSNLT-GLDEEYSARTMHLLTADQGTICFGVTAALSPNGWIKILCFVI 175
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84957.19800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A061S375_9CHLO7.680e-537.97Light-gated proton channel rhodopsin n=3 Tax=Tetra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84957contigM-pyrifera_M_contig84957:15..320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816757.3245459-CDS-M-pyrifera_M_contig84957:14..3201622816757.3245459-CDS-M-pyrifera_M_contig84957:14..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84957 15..320 -
1692278160.3952806-CDS-M-pyrifera_M_contig84957:14..3201692278160.3952806-CDS-M-pyrifera_M_contig84957:14..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84957 15..320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84957.19800.1prot_M-pyrifera_M_contig84957.19800.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84957 15..320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84957.19800.1

>prot_M-pyrifera_M_contig84957.19800.1 ID=prot_M-pyrifera_M_contig84957.19800.1|Name=mRNA_M-pyrifera_M_contig84957.19800.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
VYVDDGEVSRRFFPALRYLGWLVTCPILVAHMHGLPIGMKHKDPRRTLSA
LVVNQVMTCFGVASVLFGGTARIVLFVIAALLYLVLCKLTFDVYKVCYDT
FP
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mRNA from alignment at M-pyrifera_M_contig84957:15..320-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84957.19800.1 ID=mRNA_M-pyrifera_M_contig84957.19800.1|Name=mRNA_M-pyrifera_M_contig84957.19800.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig84957:15..320- (Macrocystis pyrifera P11B4 male)
GTGTATGTGGATGATGGCGAGGTATCACGACGGTTCTTCCCAGCTTTACG
CTACTTGGGCTGGTTGGTGACATGCCCAATTTTGGTAGCACATATGCATG
GGCTTCCAATCGGGATGAAGCACAAAGATCCACGTCGCACGTTGTCTGCT
TTGGTTGTGAATCAAGTGATGACGTGCTTTGGGGTTGCGTCTGTGTTATT
TGGTGGCACTGCTAGAATTGTCCTCTTTGTCATTGCTGCCTTACTCTACC
TTGTTCTTTGCAAGCTCACGTTTGATGTATACAAAGTTTGTTACGACACA
TTTCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84957:15..320-

>mRNA_M-pyrifera_M_contig84957.19800.1 ID=mRNA_M-pyrifera_M_contig84957.19800.1|Name=mRNA_M-pyrifera_M_contig84957.19800.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig84957:15..320- (Macrocystis pyrifera P11B4 male)
GTGTATGTGGATGATGGCGAGGTATCACGACGGTTCTTCCCAGCTTTACG
CTACTTGGGCTGGTTGGTGACATGCCCAATTTTGGTAGCACATATGCATG
GGCTTCCAATCGGGATGAAGCACAAAGATCCACGTCGCACGTTGTCTGCT
TTGGTTGTGAATCAAGTGATGACGTGCTTTGGGGTTGCGTCTGTGTTATT
TGGTGGCACTGCTAGAATTGTCCTCTTTGTCATTGCTGCCTTACTCTACC
TTGTTCTTTGCAAGCTCACGTTTGATGTATACAAAGTTTGTTACGACACA
TTTCCTGTGTATGTGGATGATGGCGAGGTATCACGACGGTTCTTCCCAGC
TTTACGCTACTTGGGCTGGTTGGTGACATGCCCAATTTTGGTAGCACATA
TGCATGGGCTTCCAATCGGGATGAAGCACAAAGATCCACGTCGCACGTTG
TCTGCTTTGGTTGTGAATCAAGTGATGACGTGCTTTGGGGTTGCGTCTGT
GTTATTTGGTGGCACTGCTAGAATTGTCCTCTTTGTCATTGCTGCCTTAC
TCTACCTTGTTCTTTGCAAGCTCACGTTTGATGTATACAAAGTTTGTTAC
GACACATTTCCT
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