mRNA_M-pyrifera_M_contig84886.19781.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84886.19781.1
Unique NamemRNA_M-pyrifera_M_contig84886.19781.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84886.19781.1 vs. uniprot
Match: A0A7X6P293_9ACTN (Bifunctional DNA primase/polymerase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6P293_9ACTN)

HSP 1 Score: 207 bits (528), Expect = 1.170e-65
Identity = 99/159 (62.26%), Postives = 116/159 (72.96%), Query Frame = 1
Query:   22 ALRMARRGWEVLPCHSPESSGCSCHQTDCSSPGKHPQTRRGLNDATTDPSAIRSWWHHSPHANLGIRTGAVSGLVVVDIDPGHGGLDSMRALVHEAPIAKGLRVRTGSGGWHLYFAHPGGIVRNSAGTALGPGVDVRGDGGYVIAPPSRHISGGTYRWA 498
            AL  ARRGW VLP H P   GCSC   DC+SP KHP+   GL+ A+  P AIR WW   P AN+GIRTG  SGLVVVD+DP HGG +++ +L  E     G R+ TGSGG HL+FAHPGG +RNSAG  LG G+D+RGDGGYV+APPSRH+SGGTYRWA
Sbjct:    8 ALGYARRGWAVLPLHQPARDGCSCAHDDCTSPAKHPKVSGGLHSASLSPDAIRRWWRRWPAANVGIRTGRESGLVVVDVDPRHGGDEALASLQDEHGQIDGWRIETGSGGSHLWFAHPGGTLRNSAGR-LGDGLDIRGDGGYVVAPPSRHMSGGTYRWA 165          
BLAST of mRNA_M-pyrifera_M_contig84886.19781.1 vs. uniprot
Match: A0A2W6CRK8_9ACTN (DNA primase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A2W6CRK8_9ACTN)

HSP 1 Score: 199 bits (505), Expect = 1.550e-60
Identity = 100/162 (61.73%), Postives = 110/162 (67.90%), Query Frame = 1
Query:   34 ARRGWEVLPCHSPESSGCSCHQTDCSSPGKHPQTRRGLNDATTDPSAIRSWWHHSPHANLGIRTGAVSGLVVVDIDPGHGGLDSMRALVHEAPIAKGLR-----VRTGSGGWHLYFAHPGGIVRNSAGTALGPGVDVRGDGGYVIAPPSRHISGGTYRWAGS 504
            A RGW V P HSP   GCSC ++DC   GKHP+T  G +DATTDP AI  WW   P A +GIRTGA SGLVVVD+DPGH G  S  ALV E     GLR     VRTG  GWHLYFAHP   +RN AG  LGPG+DVRGDGGYV+APPS H SG  YRW G+
Sbjct:    4 AERGWAVFPLHSPGPQGCSCGRSDCG--GKHPRTAHGFHDATTDPQAIEGWWSRWPGAGVGIRTGASSGLVVVDVDPGHDGPASFAALVREHG---GLRQPPPRVRTGGNGWHLYFAHPSVTIRNDAGRRLGPGLDVRGDGGYVVAPPSGHPSGHHYRWVGA 160          
BLAST of mRNA_M-pyrifera_M_contig84886.19781.1 vs. uniprot
Match: X0V1G2_9ZZZZ (Prim-Pol domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0V1G2_9ZZZZ)

HSP 1 Score: 179 bits (455), Expect = 1.300e-54
Identity = 84/162 (51.85%), Postives = 109/162 (67.28%), Query Frame = 1
Query:   13 LDTALRMARRGWEVLPCHSPESSGCSCHQTDCSSPGKHPQTRRGLNDATTDPSAIRSWWHHSPHANLGIRTGAVSGLVVVDIDPGHGGLDSMRALVH-EAPIAKGLRVRTGSGGWHLYFAHPGGIVRNSAGTALGPGVDVRGDGGYVIAPPSRHISGGTYRW 495
            +D ALR A RGW VLP H     GC+C + DCSSPGKHP+T RGL DATTD   I++WW   P AN+G+ TG  SGLVV+D+DP +GG D +  L+    P+ + +   TG GG HL+F HPGG++R     ALG G+D++ DGGY++APPS H +G  Y W
Sbjct:    1 MDAALRYAARGWPVLPLHGIRDRGCTCGRPDCSSPGKHPRTARGLKDATTDNQRIKAWWQQWPDANVGVATGNTSGLVVLDVDPRNGGDDILDDLLAAHGPLPETIESVTGGGGRHLFFKHPGGLIRTRP-NALGRGLDLKADGGYIVAPPSLHANGRRYEW 161          
BLAST of mRNA_M-pyrifera_M_contig84886.19781.1 vs. uniprot
Match: A0A7V1V4L1_9BACT (DNA primase n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7V1V4L1_9BACT)

HSP 1 Score: 176 bits (446), Expect = 5.530e-52
Identity = 88/163 (53.99%), Postives = 106/163 (65.03%), Query Frame = 1
Query:   13 LDTALRMARRGWEVLPCHSPESSGCSCHQTDCSSPGKHPQTRRGLNDATTDPSAIRSWWHHSPHANLGIRTGAVSGLVVVDIDPGHGGLDSMRALVHE--APIAKGLRVRTGSGGWHLYFAHPGGIVRNSAGTALGPGVDVRGDGGYVIAPPSRHISGGTYRW 495
            L  AL  A+RGW V P HSP +  CSC +  C+SP KHP+T+ GL DA TD + IR WW     AN+G+ TGA SGLVV+D+DP HGG +S+  L     AP  K +  RTG GG HL FAHPG  +RN    A  PG+DVRGDGGY++APPS HIS   Y W
Sbjct:   10 LSAALSYAKRGWHVFPLHSPRNGRCSCRRETCASPAKHPRTKHGLKDAATDEAVIRRWWTLWRDANIGVCTGARSGLVVIDVDPAHGGEESLADLERRYGAP-PKTVMARTGGGGRHLLFAHPGVPIRNKVQVAGLPGLDVRGDGGYIVAPPSVHISRRAYAW 171          
BLAST of mRNA_M-pyrifera_M_contig84886.19781.1 vs. uniprot
Match: UPI0016631E0A (bifunctional DNA primase/polymerase n=1 Tax=Maritimibacter lacisalsi TaxID=1526570 RepID=UPI0016631E0A)

HSP 1 Score: 167 bits (424), Expect = 4.240e-50
Identity = 88/164 (53.66%), Postives = 105/164 (64.02%), Query Frame = 1
Query:   13 LDTALRMARRGWEVLPCHSPESSGCSCHQTDCSSPGKHPQTRRGLNDATTDPSAIRSWWHHSPHANLGIRTGAVSGLVVVDID--PGHGGLDSMRALVHE-APIAKGLRVRTGSGGWHLYFAHPGGIVRNSAGTALGPGVDVRGDGGYVIAPPSRHISGGTYRW 495
            LD AL  A RGW V P H      C+C Q DCSS GKHP   RGL DATTD +AI  WW + P AN+GI TG +SGL VVD+D  P   G  S++ L  E   + + + VRTGSGG H+Y  +P   VRNSAG  LG  +D+RGDGGYV+APPS H+SG  Y W
Sbjct:    4 LDHALEYAARGWAVFPVHGIVDGICTCGQADCSSAGKHPLGGRGLKDATTDLNAINEWWSNYPGANIGIATGPISGLFVVDVDDGPSKTGFVSLQTLEAEHGQLPRDVCVRTGSGGLHIYLMNPQINVRNSAGK-LGENIDIRGDGGYVVAPPSHHVSGNLYAW 166          
BLAST of mRNA_M-pyrifera_M_contig84886.19781.1 vs. uniprot
Match: A0A838MYH3_9BACT (Bifunctional DNA primase/polymerase n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A838MYH3_9BACT)

HSP 1 Score: 172 bits (435), Expect = 3.180e-49
Identity = 84/165 (50.91%), Postives = 112/165 (67.88%), Query Frame = 1
Query:    7 EALDTALRMARRGWEVLPCHSPESSG-CSCHQTDCSSPGKHPQTRRGLNDATTDPSAIRSWWHHSPHANLGIRTGAVSGLVVVDIDPGHGGLDSMRALVHE-APIAKGLRVRTGSGGWHLYFAHPGGIVRNSAGTALGPGVDVRGDGGYVIAPPSRHISGGTYRW 495
            + L +AL  A RG+ V P H+P+  G CSCH+ DC + GKHP+T  GL DATTD + IR W+   P AN+GI TGA SG  V+D+DP  GG +S++ L+ +    A+ +  +TG GGWHL F HPGG +++SA  AL  G+DV+GDGGY++A PS H SG TY W
Sbjct:    5 QILQSALDYAERGFHVFPLHTPDPQGRCSCHK-DCGNVGKHPRTMNGLKDATTDEATIRQWFRQWPDANIGIATGAASGFFVLDVDPRSGGSESLKTLLAQHGKFAQSVWAKTGGGGWHLLFKHPGGKIKSSA-HALSSGLDVKGDGGYIVAAPSLHASGQTYAW 167          
BLAST of mRNA_M-pyrifera_M_contig84886.19781.1 vs. uniprot
Match: A0A525W767_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Nitrospira sp. CG24D TaxID=1985130 RepID=A0A525W767_9BACT)

HSP 1 Score: 171 bits (433), Expect = 8.290e-49
Identity = 77/164 (46.95%), Postives = 110/164 (67.07%), Query Frame = 1
Query:    7 EALDTALRMARRGWEVLPCHSPESSGCSCHQTDCSSPGKHPQTRRGLNDATTDPSAIRSWWHHSPHANLGIRTGAVSGLVVVDIDPGHGGLDSMRALVH-EAPIAKGLRVRTGSGGWHLYFAHPGGIVRNSAGTALGPGVDVRGDGGYVIAPPSRHISGGTYRW 495
            + +++AL++A  GW+V P HSP  + C+C + +C S GKHP+T  G+ DATTD + I +WW   P AN+G+ TG VSG+VV+DIDP HGG D++  L H    +   + V TG GG H+YFA+  G+   ++ + LG G+D+R  GGYV+APPS H+SG  Y W
Sbjct:    9 QPIESALKLASSGWDVFPLHSPSQNSCTCGKNNCGSIGKHPRTPHGVKDATTDHTLIEAWWKQWPEANIGVATGPVSGIVVLDIDPRHGGDDALAELEHLHGELPPTVEVLTGGGGRHVYFAYTLGLRLGNSASKLGSGLDIRAAGGYVVAPPSLHVSGQRYEW 172          
BLAST of mRNA_M-pyrifera_M_contig84886.19781.1 vs. uniprot
Match: A0A535BBF5_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535BBF5_9CHLR)

HSP 1 Score: 166 bits (421), Expect = 1.970e-46
Identity = 81/167 (48.50%), Postives = 105/167 (62.87%), Query Frame = 1
Query:    1 MSEALDTALRMARRGWEVLPCHSPESSGCSCHQTDCSSPGKHPQTRRGLNDATTDPSAIRSWWHHSPHANLGIRTGAVSGLVVVDIDPGHGGLDSMRAL-VHEAPIAKGLRVRTGSGGWHLYFAHPGGIVRNSAGTALGPGVDVRGDGGYVIAPPSRHISGGTYRWA 498
            ++  L  AL  + RGW V+P H+     CSCH ++C+ PGKHP+T  G  DA+TD   I+ WW   P AN+GI TGA+S LVV+D+DP HGG  S+R L      +   +  RTG GG H+ F HPGG V+N    +   G+DVRGDGGY++APPS H SG  Y WA
Sbjct:   11 VNSCLTAALVYSARGWGVIPLHTISGGSCSCHNSNCNKPGKHPRTEHGQKDASTDLETIQGWWKRWPDANVGIVTGALSRLVVLDVDPRHGGDVSLRDLEAQSGNLPSTVTSRTGGGGDHILFVHPGGQVKNRV--SFLAGLDVRGDGGYIVAPPSLHASGQRYEWA 175          
BLAST of mRNA_M-pyrifera_M_contig84886.19781.1 vs. uniprot
Match: A0A3D1JL92_9CHLR (SF3 helicase domain-containing protein n=1 Tax=Anaerolinea thermolimosa TaxID=229919 RepID=A0A3D1JL92_9CHLR)

HSP 1 Score: 170 bits (431), Expect = 1.980e-46
Identity = 85/170 (50.00%), Postives = 108/170 (63.53%), Query Frame = 1
Query:    4 SEALDTALRMARRGWEVLPCHSPESSGCSCHQTDCSSPGKHPQTRRGLNDATTDPSAIRSWWHHSPHANLGIRTGAVSGLVVVDIDPGHGGLDSMRAL-VHEAPIAKGLRVRTGSGGWHLYFAHPGGI--VRNSAGTALGPGVDVRGDGGYVIAPPSRHISGGTYRWAGS 504
            ++  D  L  A RGW VLP HS     C+C + DC+S GKHP+T  G+ DATTD +A+  W+   P AN+GI TG  SGL V+DIDP HGG D++  L V    +   L V TG GG HLYF HP G+  +++ AG  LG G+D+R DGGYV+APPS H+SG  Y W  S
Sbjct:    5 ADVFDFVLAYAARGWHVLPLHSVRGGRCTCGRADCTSSGKHPRTPHGVTDATTDLNALAEWYERWPDANVGIATGGKSGLAVLDIDPRHGGDDTLLDLEVKHGKLPSTLEVLTGGGGRHLYFKHPAGVQYLKSGAGV-LGAGLDIRADGGYVVAPPSNHVSGNPYVWEAS 173          
BLAST of mRNA_M-pyrifera_M_contig84886.19781.1 vs. uniprot
Match: A0A3M1QYI7_9BACT (DUF3987 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1QYI7_9BACT)

HSP 1 Score: 168 bits (426), Expect = 2.340e-45
Identity = 81/166 (48.80%), Postives = 105/166 (63.25%), Query Frame = 1
Query:    1 MSEALDTALRMARRGWEVLPCHSPESSGCSCHQTDCSSPGKHPQTRRGLNDATTDPSAIRSWWHHSPHANLGIRTGAVSGLVVVDIDPGHGGLDSMRALVHE-APIAKGLRVRTGSGGWHLYFAHPGGIVRNSAGTALGPGVDVRGDGGYVIAPPSRHISGGTYRW 495
            +S+    AL  A   W V+  HS     CSC +  C + GKHP+TR GL DA  D + I  WW+  P AN+G++TG  +G+VV+D+DP HGG +S+  LV E   +   +   TG GG HL F HPGG VRN +   L PG+DVRGDGGY++APPS H+SGG YRW
Sbjct:   41 LSDLKRAALWYAAHRWPVVALHSVVEGRCSCCKPGCGNAGKHPRTRHGLKDARIDDADIDHWWNRWPDANIGVKTGVTTGIVVIDVDPRHGGDESLAELVREYGDLPSTVEALTGGGGRHLVFKHPGGTVRNRSN--LRPGIDVRGDGGYIVAPPSNHMSGGQYRW 204          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84886.19781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X6P293_9ACTN1.170e-6562.26Bifunctional DNA primase/polymerase (Fragment) n=1... [more]
A0A2W6CRK8_9ACTN1.550e-6061.73DNA primase n=1 Tax=Acidimicrobiales bacterium Tax... [more]
X0V1G2_9ZZZZ1.300e-5451.85Prim-Pol domain-containing protein (Fragment) n=1 ... [more]
A0A7V1V4L1_9BACT5.530e-5253.99DNA primase n=1 Tax=Nitrospirae bacterium TaxID=20... [more]
UPI0016631E0A4.240e-5053.66bifunctional DNA primase/polymerase n=1 Tax=Mariti... [more]
A0A838MYH3_9BACT3.180e-4950.91Bifunctional DNA primase/polymerase n=1 Tax=Pyrino... [more]
A0A525W767_9BACT8.290e-4946.95Uncharacterized protein (Fragment) n=1 Tax=Nitrosp... [more]
A0A535BBF5_9CHLR1.970e-4648.50Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A3D1JL92_9CHLR1.980e-4650.00SF3 helicase domain-containing protein n=1 Tax=Ana... [more]
A0A3M1QYI7_9BACT2.340e-4548.80DUF3987 domain-containing protein n=1 Tax=Planctom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84886contigM-pyrifera_M_contig84886:16..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score161.0
Seed ortholog evalue4.8e-37
Seed eggNOG ortholog1408422.JHYF01000014_gene207
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Bifunctional DNA primase/polymerase, N-terminal
EggNOG OGs1UP6T@1239,25H7E@186801,36PYG@31979,COG5519@1,COG5519@2
COG Functional cat.L
Best tax levelClostridiaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size504
Cds size504
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.269129-CDS-M-pyrifera_M_contig84886:15..5191622816756.269129-CDS-M-pyrifera_M_contig84886:15..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84886 16..519 -
1692278159.7339156-CDS-M-pyrifera_M_contig84886:15..5191692278159.7339156-CDS-M-pyrifera_M_contig84886:15..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84886 16..519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84886.19781.1prot_M-pyrifera_M_contig84886.19781.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84886 16..519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84886.19781.1

>prot_M-pyrifera_M_contig84886.19781.1 ID=prot_M-pyrifera_M_contig84886.19781.1|Name=mRNA_M-pyrifera_M_contig84886.19781.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
MSEALDTALRMARRGWEVLPCHSPESSGCSCHQTDCSSPGKHPQTRRGLN
DATTDPSAIRSWWHHSPHANLGIRTGAVSGLVVVDIDPGHGGLDSMRALV
HEAPIAKGLRVRTGSGGWHLYFAHPGGIVRNSAGTALGPGVDVRGDGGYV
IAPPSRHISGGTYRWAGS
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mRNA from alignment at M-pyrifera_M_contig84886:16..519-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84886.19781.1 ID=mRNA_M-pyrifera_M_contig84886.19781.1|Name=mRNA_M-pyrifera_M_contig84886.19781.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig84886:16..519- (Macrocystis pyrifera P11B4 male)
ATGAGCGAAGCTCTGGACACCGCTTTACGCATGGCCCGTCGCGGCTGGGA GGTGCTGCCCTGCCACTCCCCCGAGTCCAGCGGCTGTTCGTGCCACCAAA CCGACTGCTCATCGCCGGGGAAACACCCTCAAACACGGAGGGGCCTCAAC GACGCGACGACTGACCCGTCGGCAATTCGGTCGTGGTGGCACCACAGCCC ACACGCCAACCTGGGCATTCGCACCGGTGCTGTTTCAGGGCTGGTCGTCG TCGACATTGATCCCGGTCACGGCGGCCTCGATTCGATGCGCGCCCTCGTC CACGAGGCACCCATTGCCAAAGGGCTCCGAGTCCGAACCGGATCCGGAGG TTGGCATCTGTACTTCGCCCACCCTGGTGGCATCGTACGAAACTCAGCCG GTACGGCACTCGGTCCCGGCGTCGATGTGCGGGGCGACGGCGGCTACGTA ATCGCTCCTCCGAGCCGACATATAAGCGGCGGCACCTACCGCTGGGCCGG GTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84886:16..519-

>mRNA_M-pyrifera_M_contig84886.19781.1 ID=mRNA_M-pyrifera_M_contig84886.19781.1|Name=mRNA_M-pyrifera_M_contig84886.19781.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig84886:16..519- (Macrocystis pyrifera P11B4 male)
ATGAGCGAAGCTCTGGACACCGCTTTACGCATGGCCCGTCGCGGCTGGGA
GGTGCTGCCCTGCCACTCCCCCGAGTCCAGCGGCTGTTCGTGCCACCAAA
CCGACTGCTCATCGCCGGGGAAACACCCTCAAACACGGAGGGGCCTCAAC
GACGCGACGACTGACCCGTCGGCAATTCGGTCGTGGTGGCACCACAGCCC
ACACGCCAACCTGGGCATTCGCACCGGTGCTGTTTCAGGGCTGGTCGTCG
TCGACATTGATCCCGGTCACGGCGGCCTCGATTCGATGCGCGCCCTCGTC
CACGAGGCACCCATTGCCAAAGGGCTCCGAGTCCGAACCGGATCCGGAGG
TTGGCATCTGTACTTCGCCCACCCTGGTGGCATCGTACGAAACTCAGCCG
GTACGGCACTCGGTCCCGGCGTCGATGTGCGGGGCGACGGCGGCTACGTA
ATCGCTCCTCCGAGCCGACATATAAGCGGCGGCACCTACCGCTGGGCCGG
GTCGATGAGCGAAGCTCTGGACACCGCTTTACGCATGGCCCGTCGCGGCT
GGGAGGTGCTGCCCTGCCACTCCCCCGAGTCCAGCGGCTGTTCGTGCCAC
CAAACCGACTGCTCATCGCCGGGGAAACACCCTCAAACACGGAGGGGCCT
CAACGACGCGACGACTGACCCGTCGGCAATTCGGTCGTGGTGGCACCACA
GCCCACACGCCAACCTGGGCATTCGCACCGGTGCTGTTTCAGGGCTGGTC
GTCGTCGACATTGATCCCGGTCACGGCGGCCTCGATTCGATGCGCGCCCT
CGTCCACGAGGCACCCATTGCCAAAGGGCTCCGAGTCCGAACCGGATCCG
GAGGTTGGCATCTGTACTTCGCCCACCCTGGTGGCATCGTACGAAACTCA
GCCGGTACGGCACTCGGTCCCGGCGTCGATGTGCGGGGCGACGGCGGCTA
CGTAATCGCTCCTCCGAGCCGACATATAAGCGGCGGCACCTACCGCTGGG
CCGGGTCG
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