mRNA_M-pyrifera_M_contig8476.19745.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8476.19745.1
Unique NamemRNA_M-pyrifera_M_contig8476.19745.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8476.19745.1 vs. uniprot
Match: A0A7M7T650_NASVI (Uncharacterized protein n=1 Tax=Nasonia vitripennis TaxID=7425 RepID=A0A7M7T650_NASVI)

HSP 1 Score: 74.7 bits (182), Expect = 3.880e-15
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 LCVKISKD--FTLHGYFDASHSDDRNNNRSVSGYVYMFAGRAVTWSSKEQPVVALSSCESEYIALAYASQEAVYL 219
            LC++ S+D    L GY DASH  D ++ RSVSGY+++  G AV+W+S+ Q  VALSS E+EY++L  A+QEA++L
Sbjct:   76 LCLQYSQDKNSNLIGYCDASHGCDGHDARSVSGYIFIMQGGAVSWNSRRQQTVALSSTEAEYLSLTAAAQEAIWL 150          
BLAST of mRNA_M-pyrifera_M_contig8476.19745.1 vs. uniprot
Match: UPI001F042557 (secreted RxLR effector protein 161-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F042557)

HSP 1 Score: 74.3 bits (181), Expect = 1.710e-14
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   10 KISKDFTLHGYFDASHSDDRNNNRSVSGYVYMFAGRAVTWSSKEQPVVALSSCESEYIALAYASQEAVYL 219
            KIS D  L GY DA  + D ++ RS SG V++ +G A++W+SK+QP VALS+ ESEYIAL YA+QE V+L
Sbjct:   81 KISID--LEGYSDADWASDTDDRRSTSGNVFIISGGAISWASKKQPTVALSTSESEYIALCYATQELVWL 148          
BLAST of mRNA_M-pyrifera_M_contig8476.19745.1 vs. uniprot
Match: UPI0012454B2B (secreted RxLR effector protein 161-like n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI0012454B2B)

HSP 1 Score: 72.0 bits (175), Expect = 5.290e-14
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   22 DFTLHGYFDASHSDDRNNNRSVSGYVYMFAGRAVTWSSKEQPVVALSSCESEYIALAYASQEAVYL 219
            D  L GYFD   + DR+ ++S +GYV++ +G A++W SK+Q  +ALS+ ES+YIA + A+QEAV+L
Sbjct:   67 DLRLRGYFDVDWASDRDEHKSTTGYVFLLSGAAISWCSKKQSCIALSTMESDYIACSIATQEAVWL 132          
BLAST of mRNA_M-pyrifera_M_contig8476.19745.1 vs. uniprot
Match: UPI0014487C49 (secreted RxLR effector protein 161-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI0014487C49)

HSP 1 Score: 72.4 bits (176), Expect = 6.970e-14
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 LCVKISKDFTLHGYFDASHSDDRNNNRSVSGYVYMFAGRAVTWSSKEQPVVALSSCESEYIALAYASQEAVYL 219
            LC +  KD  L GY +A H  D +  +S SGYV++ +  A++WSSK+Q  V+LS  E+EY+ALA A+QE V+L
Sbjct:   45 LCYQGGKDLRLVGYSNADHGGDLDERKSTSGYVFLLSDGAISWSSKKQSSVSLSMMEAEYVALASAAQEVVWL 117          
BLAST of mRNA_M-pyrifera_M_contig8476.19745.1 vs. uniprot
Match: UPI0014450CC2 (secreted RxLR effector protein 161-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI0014450CC2)

HSP 1 Score: 72.8 bits (177), Expect = 8.370e-14
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 LCVKISKDFTLHGYFDASHSDDRNNNRSVSGYVYMFAGRAVTWSSKEQPVVALSSCESEYIALAYASQEAVYL 219
            LC +  KD  L GY DA    D +  +S SGY+++ +  A++WSSK+Q  V+LS+ ESEY+ALA A+QE ++L
Sbjct:   92 LCYQGGKDLRLVGYSDADQGGDLDERKSTSGYIFLLSDGAISWSSKKQSCVSLSTMESEYVALASAAQEVIWL 164          
BLAST of mRNA_M-pyrifera_M_contig8476.19745.1 vs. uniprot
Match: A0A7D9IWX2_PARCT (Effector candidate, partial n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IWX2_PARCT)

HSP 1 Score: 73.6 bits (179), Expect = 1.020e-13
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   22 DFTLHGYFDASHSDDRNNNRSVSGYVYMFAGRAVTWSSKEQPVVALSSCESEYIALAYASQEAVYL 219
            D  + GY DA  + D ++ RS SG V++ +G A++W+SK+QP VALS+ ESEYIAL +A+QEAV+L
Sbjct:  178 DANVEGYSDADWASDSDDRRSTSGNVFVMSGGAISWASKKQPTVALSTSESEYIALCFATQEAVWL 243          
BLAST of mRNA_M-pyrifera_M_contig8476.19745.1 vs. uniprot
Match: A0A270AGN3_MOROS (Uncharacterized protein (Fragment) n=5 Tax=Bacteria TaxID=2 RepID=A0A270AGN3_MOROS)

HSP 1 Score: 68.6 bits (166), Expect = 1.020e-13
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   31 LHGYFDASHSDDRNNNRSVSGYVYMFAGRAVTWSSKEQPVVALSSCESEYIALAYASQEAVYL 219
            L GY D+  + D+N+ +SV+GYV+M AG A+TW SK+Q  VALSS E+EY+AL  A +E ++L
Sbjct:    3 LVGYCDSDWAADKNDRKSVTGYVFMMAGAAITWKSKKQQTVALSSTEAEYMALGDAVKEVLWL 65          
BLAST of mRNA_M-pyrifera_M_contig8476.19745.1 vs. uniprot
Match: A0A6S7HL91_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HL91_PARCT)

HSP 1 Score: 73.6 bits (179), Expect = 1.190e-13
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   22 DFTLHGYFDASHSDDRNNNRSVSGYVYMFAGRAVTWSSKEQPVVALSSCESEYIALAYASQEAVYL 219
            D  + GY DA  + D ++ RS SG V++ +G A++W+SK+QP VALS+ ESEYIAL +A+QEAV+L
Sbjct:  147 DANVEGYSDADWASDSDDRRSTSGNVFVMSGGAISWASKKQPTVALSTSESEYIALCFATQEAVWL 212          
BLAST of mRNA_M-pyrifera_M_contig8476.19745.1 vs. uniprot
Match: UPI0014470729 (secreted RxLR effector protein 161-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI0014470729)

HSP 1 Score: 71.6 bits (174), Expect = 2.060e-13
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 LCVKISKDFTLHGYFDASHSDDRNNNRSVSGYVYMFAGRAVTWSSKEQPVVALSSCESEYIALAYASQEAVYL 219
            +C +  KD    GY D  H  D +  +S SGYV++ +  A++WSSK++  V+LS+ E+EY+ALA A+QEAV+L
Sbjct:   72 ICYQGGKDLQFVGYSDVDHGGDLDERKSTSGYVFLLSDGAISWSSKKRSCVSLSTMEAEYVALASATQEAVWL 144          
BLAST of mRNA_M-pyrifera_M_contig8476.19745.1 vs. uniprot
Match: UPI001ABC3FD6 (secreted RxLR effector protein 161-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001ABC3FD6)

HSP 1 Score: 71.2 bits (173), Expect = 2.090e-13
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    4 CVKISKDF-TLHGYFDASHSDDRNNNRSVSGYVYMFAGRAVTWSSKEQPVVALSSCESEYIALAYASQEAVYLS 222
            C K   D  +L GY D+ H+ D N+ +S SG VY   G  VTW+S++Q VVA+SSCE+EY+A A A+ + V+LS
Sbjct:   76 CYKRGSDGPSLVGYSDSDHAGDTNDRKSTSGVVYFLGGSVVTWTSQKQKVVAISSCEAEYVAAAAATCQGVWLS 149          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8476.19745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7M7T650_NASVI3.880e-1550.67Uncharacterized protein n=1 Tax=Nasonia vitripenni... [more]
UPI001F0425571.710e-1455.71secreted RxLR effector protein 161-like n=1 Tax=Xe... [more]
UPI0012454B2B5.290e-1448.48secreted RxLR effector protein 161-like n=1 Tax=Qu... [more]
UPI0014487C496.970e-1447.95secreted RxLR effector protein 161-like n=1 Tax=Ni... [more]
UPI0014450CC28.370e-1446.58secreted RxLR effector protein 161-like n=1 Tax=Ni... [more]
A0A7D9IWX2_PARCT1.020e-1353.03Effector candidate, partial n=1 Tax=Paramuricea cl... [more]
A0A270AGN3_MOROS1.020e-1352.38Uncharacterized protein (Fragment) n=5 Tax=Bacteri... [more]
A0A6S7HL91_PARCT1.190e-1353.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00144707292.060e-1345.21secreted RxLR effector protein 161-like n=1 Tax=Ni... [more]
UPI001ABC3FD62.090e-1348.65secreted RxLR effector protein 161-like n=1 Tax=Ae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8476contigM-pyrifera_M_contig8476:1490..1711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.9
Seed ortholog evalue3.4e-11
Seed eggNOG ortholog3827.XP_004514406.1
KEGG rclassRC00563
KEGG koko:K01792
KEGG ReactionR02739
KEGG Pathwayko00010,ko01100,ko01110,ko01120,ko01130,map00010,map01100,map01110,map01120,map01130
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the glucose-6-phosphate 1-epimerase family
EggNOG OGs37MSX@33090,3G85N@35493,4JMBS@91835,COG0676@1,COG2801@1,KOG0017@2759,KOG1594@2759
EC5.1.3.15
COG Functional cat.G
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.3036087-CDS-M-pyrifera_M_contig8476:1489..17111622816754.3036087-CDS-M-pyrifera_M_contig8476:1489..1711Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8476 1490..1711 -
1692278158.5246606-CDS-M-pyrifera_M_contig8476:1489..17111692278158.5246606-CDS-M-pyrifera_M_contig8476:1489..1711Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8476 1490..1711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8476.19745.1prot_M-pyrifera_M_contig8476.19745.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8476 1490..1711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8476.19745.1

>prot_M-pyrifera_M_contig8476.19745.1 ID=prot_M-pyrifera_M_contig8476.19745.1|Name=mRNA_M-pyrifera_M_contig8476.19745.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
LCVKISKDFTLHGYFDASHSDDRNNNRSVSGYVYMFAGRAVTWSSKEQPV
VALSSCESEYIALAYASQEAVYLS
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mRNA from alignment at M-pyrifera_M_contig8476:1490..1711-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8476.19745.1 ID=mRNA_M-pyrifera_M_contig8476.19745.1|Name=mRNA_M-pyrifera_M_contig8476.19745.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig8476:1490..1711- (Macrocystis pyrifera P11B4 male)
CTCTGCGTAAAGATTTCGAAGGATTTCACCCTTCACGGGTATTTTGATGC AAGCCACAGTGACGATCGAAACAACAATCGCTCCGTTTCAGGTTACGTAT ACATGTTTGCAGGGAGAGCAGTCACGTGGAGTTCGAAGGAGCAACCCGTG GTGGCACTCTCGTCGTGCGAATCGGAGTACATTGCGTTAGCATACGCGAG CCAAGAGGCCGTGTATCTTTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8476:1490..1711-

>mRNA_M-pyrifera_M_contig8476.19745.1 ID=mRNA_M-pyrifera_M_contig8476.19745.1|Name=mRNA_M-pyrifera_M_contig8476.19745.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig8476:1490..1711- (Macrocystis pyrifera P11B4 male)
CTCTGCGTAAAGATTTCGAAGGATTTCACCCTTCACGGGTATTTTGATGC
AAGCCACAGTGACGATCGAAACAACAATCGCTCCGTTTCAGGTTACGTAT
ACATGTTTGCAGGGAGAGCAGTCACGTGGAGTTCGAAGGAGCAACCCGTG
GTGGCACTCTCGTCGTGCGAATCGGAGTACATTGCGTTAGCATACGCGAG
CCAAGAGGCCGTGTATCTTTCTCTCTGCGTAAAGATTTCGAAGGATTTCA
CCCTTCACGGGTATTTTGATGCAAGCCACAGTGACGATCGAAACAACAAT
CGCTCCGTTTCAGGTTACGTATACATGTTTGCAGGGAGAGCAGTCACGTG
GAGTTCGAAGGAGCAACCCGTGGTGGCACTCTCGTCGTGCGAATCGGAGT
ACATTGCGTTAGCATACGCGAGCCAAGAGGCCGTGTATCTTTCT
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