mRNA_M-pyrifera_M_contig84645.19733.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84645.19733.1
Unique NamemRNA_M-pyrifera_M_contig84645.19733.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84645.19733.1 vs. uniprot
Match: A0A1Q9CUE9_SYMMI (Golgi reassembly-stacking protein 2 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CUE9_SYMMI)

HSP 1 Score: 51.6 bits (122), Expect = 5.810e-6
Identity = 20/54 (37.04%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   34 GHRVLEVQPKSPASECGLVPYLDFVVDVDGEHLDGGSRSLAAVMRGSKNKEVSL 195
            G R+ +V P SPA+E GL  + DF+V++DG H+D    + A+ ++ ++N+   L
Sbjct:   55 GFRIFKVNPGSPAAEAGLEVFFDFIVEIDGVHMDADQATFASAIQEAENQRTKL 108
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BLAST of mRNA_M-pyrifera_M_contig84645.19733.1 vs. uniprot
Match: A0A812LF07_SYMMI (GORASP2 protein n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812LF07_SYMMI)

HSP 1 Score: 51.6 bits (122), Expect = 5.930e-6
Identity = 20/54 (37.04%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   34 GHRVLEVQPKSPASECGLVPYLDFVVDVDGEHLDGGSRSLAAVMRGSKNKEVSL 195
            G R+ +V P SPA+E GL  + DF+V++DG H+D    + A+ ++ ++N+   L
Sbjct:   56 GFRIFKVNPGSPAAEAGLEVFFDFIVEIDGVHMDADQATFASAIQEAENQRTKL 109
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BLAST of mRNA_M-pyrifera_M_contig84645.19733.1 vs. uniprot
Match: A0A812XRB1_9DINO (GORASP2 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XRB1_9DINO)

HSP 1 Score: 51.6 bits (122), Expect = 5.940e-6
Identity = 20/54 (37.04%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   34 GHRVLEVQPKSPASECGLVPYLDFVVDVDGEHLDGGSRSLAAVMRGSKNKEVSL 195
            G R+ +V P SPA+E GL  + DF+V++DG H+D    + A+ ++ ++N+   L
Sbjct:   41 GFRIFKVNPGSPAAEAGLEVFFDFIVEIDGVHMDADQATFASAIQEAENQRTKL 94
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BLAST of mRNA_M-pyrifera_M_contig84645.19733.1 vs. uniprot
Match: B7GDY6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GDY6_PHATC)

HSP 1 Score: 50.4 bits (119), Expect = 1.510e-5
Identity = 29/67 (43.28%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:   28 TWGHRVLEVQPKSPASECGLVPYLDFVVDVDGEHLDGGSRSLA-----------AVMRGSKNKEVSL 195
            T G+RVL VQP SPAS+ GLV +LDF+V   G  L G    LA           A+++  +NKE+ L
Sbjct:   24 TLGYRVLGVQPDSPASQAGLVSFLDFLVGAQGRMLLGSGEDLADGEEYDDIDLPALLKEYQNKELEL 90
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BLAST of mRNA_M-pyrifera_M_contig84645.19733.1 vs. uniprot
Match: A0A812QLN9_SYMPI (GORASP2 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812QLN9_SYMPI)

HSP 1 Score: 49.3 bits (116), Expect = 3.860e-5
Identity = 19/54 (35.19%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:   34 GHRVLEVQPKSPASECGLVPYLDFVVDVDGEHLDGGSRSLAAVMRGSKNKEVSL 195
            G R+ +V P SPA+E GL  + DF++++DG H+D    + A  ++ ++N    L
Sbjct:   11 GFRIFKVNPGSPAAEAGLEVFFDFILEIDGVHMDADQATFATAIQEAENHRTKL 64
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84645.19733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1Q9CUE9_SYMMI5.810e-637.04Golgi reassembly-stacking protein 2 n=1 Tax=Symbio... [more]
A0A812LF07_SYMMI5.930e-637.04GORASP2 protein n=4 Tax=Symbiodinium TaxID=2949 Re... [more]
A0A812XRB1_9DINO5.940e-637.04GORASP2 protein n=1 Tax=Symbiodinium sp. CCMP2592 ... [more]
B7GDY6_PHATC1.510e-543.28Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A812QLN9_SYMPI3.860e-535.19GORASP2 protein n=1 Tax=Symbiodinium pilosum TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84645contigM-pyrifera_M_contig84645:675..875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.8004029-CDS-M-pyrifera_M_contig84645:674..8751622816753.8004029-CDS-M-pyrifera_M_contig84645:674..875Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84645 675..875 +
1692278158.2507563-CDS-M-pyrifera_M_contig84645:674..8751692278158.2507563-CDS-M-pyrifera_M_contig84645:674..875Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84645 675..875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84645.19733.1prot_M-pyrifera_M_contig84645.19733.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84645 675..875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84645.19733.1

>prot_M-pyrifera_M_contig84645.19733.1 ID=prot_M-pyrifera_M_contig84645.19733.1|Name=mRNA_M-pyrifera_M_contig84645.19733.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
MDVMGREDVTWGHRVLEVQPKSPASECGLVPYLDFVVDVDGEHLDGGSRS
LAAVMRGSKNKEVSLGI
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mRNA from alignment at M-pyrifera_M_contig84645:675..875+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84645.19733.1 ID=mRNA_M-pyrifera_M_contig84645.19733.1|Name=mRNA_M-pyrifera_M_contig84645.19733.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig84645:675..875+ (Macrocystis pyrifera P11B4 male)
ATGGACGTGATGGGACGGGAAGATGTCACGTGGGGACATAGGGTGTTGGA
AGTACAACCGAAATCTCCAGCTTCTGAATGCGGCCTTGTCCCCTACCTCG
ACTTTGTTGTGGATGTTGACGGAGAACACCTTGATGGAGGTTCTAGGTCG
CTCGCAGCTGTCATGCGAGGCTCGAAAAACAAGGAAGTGTCTCTCGGCAT
C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84645:675..875+

>mRNA_M-pyrifera_M_contig84645.19733.1 ID=mRNA_M-pyrifera_M_contig84645.19733.1|Name=mRNA_M-pyrifera_M_contig84645.19733.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig84645:675..875+ (Macrocystis pyrifera P11B4 male)
ATGGACGTGATGGGACGGGAAGATGTCACGTGGGGACATAGGGTGTTGGA
AGTACAACCGAAATCTCCAGCTTCTGAATGCGGCCTTGTCCCCTACCTCG
ACTTTGTTGTGGATGTTGACGGAGAACACCTTGATGGAGGTTCTAGGTCG
CTCGCAGCTGTCATGCGAGGCTCGAAAAACAAGGAAGTGTCTCTCGGCAT
CATGGACGTGATGGGACGGGAAGATGTCACGTGGGGACATAGGGTGTTGG
AAGTACAACCGAAATCTCCAGCTTCTGAATGCGGCCTTGTCCCCTACCTC
GACTTTGTTGTGGATGTTGACGGAGAACACCTTGATGGAGGTTCTAGGTC
GCTCGCAGCTGTCATGCGAGGCTCGAAAAACAAGGAAGTGTCTCTCGGCA
TC
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