mRNA_M-pyrifera_M_contig8456.19715.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8456.19715.1
Unique NamemRNA_M-pyrifera_M_contig8456.19715.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8456.19715.1 vs. uniprot
Match: A0A6H5L0E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E1_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 5.960e-28
Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    1 LFVAFFVYSSVSSTVFKTFVCDSLDDGVNYLRADYRLTCWSHEHVGYVVYASVMVLVYPIGIPAAFAWWLARHRHDL 231
            LFV F +Y++VS T+F+TFVCD LDDG++YLRADY LTC +  H  Y VYA +M+LVYP+GIP  F WWL +HRH+L
Sbjct:   21 LFVMFVIYATVSYTIFETFVCDPLDDGISYLRADYSLTCETETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHEL 97          
BLAST of mRNA_M-pyrifera_M_contig8456.19715.1 vs. uniprot
Match: D7G021_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G021_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 7.840e-28
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    1 LFVAFFVYSSVSSTVFKTFVCDSLDDGVNYLRADYRLTCWSHEHVGYVVYASVMVLVYPIGIPAAFAWWLARHRHDL 231
            +F+ FFVYSSVS  +F TF C++L+DGV+YLRADY   C+S  HV + VYA VMVLVYP+GIPA F WWL R+RHDL
Sbjct:   88 IFILFFVYSSVSRDIFLTFSCETLEDGVSYLRADYGFVCFSRRHVAFRVYAGVMVLVYPLGIPALFGWWLRRNRHDL 164          
BLAST of mRNA_M-pyrifera_M_contig8456.19715.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.840e-26
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    1 LFVAFFVYSSVSSTVFKTFVCDSLDDGVNYLRADYRLTCWSHEHVGYVVYASVMVLVYPIGIPAAFAWWLARHRHDL 231
            LF+ F +Y++VS T+F+TFVCD LDDG +YLR+DY LTC +  H  Y VYA +M+LVYP+GIP  F WWL +HRH+L
Sbjct:  815 LFIMFVIYATVSYTIFETFVCDPLDDGNSYLRSDYSLTCDTETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHEL 891          
BLAST of mRNA_M-pyrifera_M_contig8456.19715.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 6.920e-26
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 LFVAFFVYSSVSSTVFKTFVCDSLDDGVNYLRADYRLTCWSHEHVGYVVYASVMVLVYPIGIPAAFAWWLARHRHDLT 234
            LF+ F +YSSVS T+F+TF+C++LDD V YLRADY LTC +  H    VYA +MVLVYPIGIPA FAWWLA +R DL 
Sbjct:  145 LFIVFAIYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLV 222          
BLAST of mRNA_M-pyrifera_M_contig8456.19715.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 8.640e-26
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 LFVAFFVYSSVSSTVFKTFVCDSLDDGVNYLRADYRLTCWSHEHVGYVVYASVMVLVYPIGIPAAFAWWLARHRHDLT 234
            LF++F VYSSVS  +F+TFVC++LDDGV YLRADY LTC +  H   + YA +M+LVYP+GIP  ++WWL  +RHDL 
Sbjct:  841 LFISFVVYSSVSFNIFQTFVCETLDDGVTYLRADYSLTCSTGVHTAMMAYAGLMILVYPVGIPTVYSWWLLSNRHDLV 918          
BLAST of mRNA_M-pyrifera_M_contig8456.19715.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.400e-25
Identity = 50/78 (64.10%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    1 LFVAFFVYSSVSSTVFKTFVCDSLDDGVNYLRADYRLTCWSHEHVGYVVYASVMVLVYPIGIPAAFAWWLARHRHDLT 234
            LF+ F  YSSVS T+F+TF+C++LDD V YLRADY LTC +  H    VYA +MVLVYPIGIPA FAWWLA +R DL 
Sbjct:  123 LFIVFATYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLV 200          
BLAST of mRNA_M-pyrifera_M_contig8456.19715.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.080e-25
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    1 LFVAFFVYSSVSSTVFKTFVCDSLDDGVNYLRADYRLTCWSHEHVGYVVYASVMVLVYPIGIPAAFAWWLARHRHDL 231
            LFV FF+YSSVS TVF+TFVCD+LDDGV+YLRADY LTC +  +  +  YA+VMV VYPIGIPA FAW L  +R DL
Sbjct:  813 LFVMFFIYSSVSFTVFQTFVCDTLDDGVSYLRADYSLTCDTPRYGAFRGYAAVMVCVYPIGIPATFAWLLGSNRQDL 889          
BLAST of mRNA_M-pyrifera_M_contig8456.19715.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 4.130e-25
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    1 LFVAFFVYSSVSSTVFKTFVCDSLDDGVNYLRADYRLTCWSHEHVGYVVYASVMVLVYPIGIPAAFAWWLARHRHDL 231
            LFV F +Y++VS T+F+TFVCD+LDDG +YLRADY LTC +  H  Y VYA + VLVYP+GIP  F WWL ++RH+L
Sbjct:  821 LFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCVFGWWLFKNRHEL 897          
BLAST of mRNA_M-pyrifera_M_contig8456.19715.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.640e-25
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    1 LFVAFFVYSSVSSTVFKTFVCDSLDDGVNYLRADYRLTCWSHEHVGYVVYASVMVLVYPIGIPAAFAWWLARHRHDL 231
            LFV F +Y++VS T+F+TFVCD+LDDG +YLRADY LTC +  H  Y VYA + VLVYP+GIP  F WWL ++RH+L
Sbjct:  802 LFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCIFGWWLFKNRHEL 878          
BLAST of mRNA_M-pyrifera_M_contig8456.19715.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.720e-23
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 LFVAFFVYSSVSSTVFKTFVCDSLDDGVNYLRADYRLTCWSHEHVGYVVYASVMVLVYPIGIPAAFAWWLARHRHDLT 234
            LF+ F VYSSVS  +F+TFVC++LDDGV YLRADY L C +  H    VYA +M+ VYP GIPA F  WL  +RHDL 
Sbjct:  165 LFIMFVVYSSVSFNIFQTFVCETLDDGVEYLRADYSLVCSTDTHTAMKVYAGLMIFVYPFGIPAFFTLWLVSNRHDLV 242          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8456.19715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0E1_9PHAE5.960e-2862.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G021_ECTSI7.840e-2864.94Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
D7FTU5_ECTSI1.840e-2659.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHA3_9PHAE6.920e-2664.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI3_9PHAE8.640e-2658.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUB5_ECTSI1.400e-2564.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSF5_9PHAE4.080e-2567.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI4.130e-2561.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE5.640e-2561.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPF7_ECTSI1.720e-2358.97Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8456contigM-pyrifera_M_contig8456:1511..1744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue5.4e-23
Seed eggNOG ortholog2880.D7G021
Hectar predicted targeting categorysignal peptide
EggNOG OGs2D43J@1,2STRI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.9692535-CDS-M-pyrifera_M_contig8456:1510..17441622816752.9692535-CDS-M-pyrifera_M_contig8456:1510..1744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8456 1511..1744 -
1692278157.81789-CDS-M-pyrifera_M_contig8456:1510..17441692278157.81789-CDS-M-pyrifera_M_contig8456:1510..1744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8456 1511..1744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8456.19715.1prot_M-pyrifera_M_contig8456.19715.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8456 1511..1744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8456.19715.1

>prot_M-pyrifera_M_contig8456.19715.1 ID=prot_M-pyrifera_M_contig8456.19715.1|Name=mRNA_M-pyrifera_M_contig8456.19715.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
LFVAFFVYSSVSSTVFKTFVCDSLDDGVNYLRADYRLTCWSHEHVGYVVY
ASVMVLVYPIGIPAAFAWWLARHRHDLT
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mRNA from alignment at M-pyrifera_M_contig8456:1511..1744-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8456.19715.1 ID=mRNA_M-pyrifera_M_contig8456.19715.1|Name=mRNA_M-pyrifera_M_contig8456.19715.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig8456:1511..1744- (Macrocystis pyrifera P11B4 male)
CTGTTCGTTGCGTTCTTCGTGTACTCTTCGGTGTCGTCAACGGTCTTCAA GACGTTTGTCTGCGACTCTCTAGACGACGGTGTTAATTACCTTCGCGCCG ACTACCGCTTAACCTGTTGGTCTCACGAGCACGTTGGATACGTGGTTTAT GCAAGCGTTATGGTGCTCGTGTATCCTATCGGCATACCGGCAGCCTTCGC ATGGTGGCTCGCTCGTCACCGGCACGATCTCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8456:1511..1744-

>mRNA_M-pyrifera_M_contig8456.19715.1 ID=mRNA_M-pyrifera_M_contig8456.19715.1|Name=mRNA_M-pyrifera_M_contig8456.19715.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig8456:1511..1744- (Macrocystis pyrifera P11B4 male)
CTGTTCGTTGCGTTCTTCGTGTACTCTTCGGTGTCGTCAACGGTCTTCAA
GACGTTTGTCTGCGACTCTCTAGACGACGGTGTTAATTACCTTCGCGCCG
ACTACCGCTTAACCTGTTGGTCTCACGAGCACGTTGGATACGTGGTTTAT
GCAAGCGTTATGGTGCTCGTGTATCCTATCGGCATACCGGCAGCCTTCGC
ATGGTGGCTCGCTCGTCACCGGCACGATCTCACCCTGTTCGTTGCGTTCT
TCGTGTACTCTTCGGTGTCGTCAACGGTCTTCAAGACGTTTGTCTGCGAC
TCTCTAGACGACGGTGTTAATTACCTTCGCGCCGACTACCGCTTAACCTG
TTGGTCTCACGAGCACGTTGGATACGTGGTTTATGCAAGCGTTATGGTGC
TCGTGTATCCTATCGGCATACCGGCAGCCTTCGCATGGTGGCTCGCTCGT
CACCGGCACGATCTCACC
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