mRNA_M-pyrifera_M_contig84425.19688.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84425.19688.1
Unique NamemRNA_M-pyrifera_M_contig84425.19688.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84425.19688.1 vs. uniprot
Match: A0A7S1SZG7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SZG7_9CHLO)

HSP 1 Score: 167 bits (424), Expect = 1.270e-49
Identity = 94/146 (64.38%), Postives = 113/146 (77.40%), Query Frame = 1
Query:   13 MHVNVGVVGHVDSGKTSLVRALSTTLSTAALDKHPESKRRGITLDLGFSAFSMKLGE-------DSVDVTLVDCPGHASLLRTIVGGASIVDFALIVIDATKGIQAQTAEAIVVAELVTSDAVVVLNKVD---LATPEK-IEKTRK 417
            +++NVGV+GHVDSGKTSLVRALST LSTAALDKHP+SK RGITLDLGFS+F + L E       D +  TLVDCPGHASL+RTI+GGA I+D  ++V+D TKGIQAQTAE IVV EL T   +V LNK+D   +AT +K I K +K
Sbjct:   61 LNINVGVLGHVDSGKTSLVRALSTQLSTAALDKHPQSKERGITLDLGFSSFMVPLPERLQHLPYDQLQFTLVDCPGHASLIRTILGGAQIIDMMVLVVDVTKGIQAQTAECIVVGELTTDYLIVALNKIDQLPVATRDKQIHKAKK 206          
BLAST of mRNA_M-pyrifera_M_contig84425.19688.1 vs. uniprot
Match: A0A7S2RBF0_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RBF0_9STRA)

HSP 1 Score: 174 bits (440), Expect = 7.360e-49
Identity = 92/141 (65.25%), Postives = 110/141 (78.01%), Query Frame = 1
Query:   13 MHVNVGVVGHVDSGKTSLVRALSTTLSTAALDKHPESKRRGITLDLGFSAFSMKLGE----------DSVDVTLVDCPGHASLLRTIVGGASIVDFALIVIDATKGIQAQTAEAIVVAELVTSDAVVVLNKVDLATPEKIE 405
            ++VN+G++GHVDSGKTSLVRALST LSTAALDKHP+SK RGITLDLGFSAF   L E          D +  TLVDCPGHASL+RTI+GGA I+D  L+V+D TKGIQ QTAE +V+ E++T+D VVVLNK+DL   EK E
Sbjct:   20 INVNIGILGHVDSGKTSLVRALSTMLSTAALDKHPQSKERGITLDLGFSAFITPLPEHLNKDGAGLSDKIQYTLVDCPGHASLIRTIIGGAQIIDRMLLVVDVTKGIQTQTAECLVIGEILTNDLVVVLNKIDLIPDEKRE 160          
BLAST of mRNA_M-pyrifera_M_contig84425.19688.1 vs. uniprot
Match: A0A8J4FTB8_9CHLO (Tr-type G domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FTB8_9CHLO)

HSP 1 Score: 164 bits (415), Expect = 2.180e-48
Identity = 87/137 (63.50%), Postives = 105/137 (76.64%), Query Frame = 1
Query:    4 KPEMHVNVGVVGHVDSGKTSLVRALSTTLSTAALDKHPESKRRGITLDLGFSAFSMKLGE-------DSVDVTLVDCPGHASLLRTIVGGASIVDFALIVIDATKGIQAQTAEAIVVAELVTSDAVVVLNKVDLATP 393
            K  ++VNVG++GHVDSGKTSLV ALST LSTAALDKHP+SK RGITLDLGFSAF++ + E       D +  TLVDCPGHASL+RTI+GG  I+D  ++VID TKG+Q QTAE +VV E+ TS  VV LNK+D   P
Sbjct:    3 KRVLNVNVGILGHVDSGKTSLVAALSTRLSTAALDKHPQSKERGITLDLGFSAFTLPMPEHMAHLPYDELQFTLVDCPGHASLIRTIIGGIQIIDMMVLVIDITKGLQTQTAECLVVGEVATSRMVVALNKIDQLYP 139          
BLAST of mRNA_M-pyrifera_M_contig84425.19688.1 vs. uniprot
Match: A0A2V0NPL3_9CHLO (Selenocysteine-specific elongation factor n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NPL3_9CHLO)

HSP 1 Score: 172 bits (435), Expect = 6.880e-48
Identity = 91/135 (67.41%), Postives = 109/135 (80.74%), Query Frame = 1
Query:   13 MHVNVGVVGHVDSGKTSLVRALSTTLSTAALDKHPESKRRGITLDLGFSAFSMKLGE-------DSVDVTLVDCPGHASLLRTIVGGASIVDFALIVIDATKGIQAQTAEAIVVAELVTSDAVVVLNKVDLATPE 396
            ++VN+GV+GHVDSGKTSLV ALS+TLSTAALDKHP+S+ RGITLDLGFSAFS  L E       +++ +TLVDCPGHASL+RTIVGGA I+D  L+V+D TKG+QAQTAE +VVAE+     VV LNKVDL  PE
Sbjct:   11 LNVNIGVMGHVDSGKTSLVAALSSTLSTAALDKHPQSRERGITLDLGFSAFSAPLPERLGGLPFEALQITLVDCPGHASLIRTIVGGARIIDAVLLVVDITKGLQAQTAECLVVAEMAAQRLVVALNKVDLLPPE 145          
BLAST of mRNA_M-pyrifera_M_contig84425.19688.1 vs. uniprot
Match: A0A7S0CTB3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CTB3_9EUKA)

HSP 1 Score: 160 bits (406), Expect = 8.900e-48
Identity = 84/148 (56.76%), Postives = 112/148 (75.68%), Query Frame = 1
Query:   13 MHVNVGVVGHVDSGKTSLVRALSTTLSTAALDKHPESKRRGITLDLGFSAFSMKLGED---------SVDVTLVDCPGHASLLRTIVGGASIVDFALIVIDATKGIQAQTAEAIVVAELVTSDAVVVLNKVDLATP----EKIEKTRK 417
            ++VNVGV+GHVDSGKTSLV+ALST LSTAALDKHP+S++RGITLDLGFSAF++ + ED          +  TLVDCPGHASL++T++GGA+I+D  ++VID  KGIQ QTAE +++ E+++   ++ LNK DL       EKI K +K
Sbjct:   20 LNVNVGVLGHVDSGKTSLVKALSTELSTAALDKHPDSRKRGITLDLGFSAFTIDVPEDRKEEFKGYEKIQFTLVDCPGHASLIKTVIGGAAIIDLMILVIDINKGIQTQTAECLIIGEILSDYMIIALNKADLIPKAKRAEKIAKMKK 167          
BLAST of mRNA_M-pyrifera_M_contig84425.19688.1 vs. uniprot
Match: A0A2R5G8P6_9STRA (Selenocysteine-specific elongation factor n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8P6_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.460e-47
Identity = 88/131 (67.18%), Postives = 107/131 (81.68%), Query Frame = 1
Query:   13 MHVNVGVVGHVDSGKTSLVRALSTTLSTAALDKHPESKRRGITLDLGFSAFSMKLGEDSVDV-------TLVDCPGHASLLRTIVGGASIVDFALIVIDATKGIQAQTAEAIVVAELVTSDAVVVLNKVDL 384
            ++VNVGV+GHVDSGKTSLVRALST LSTAALDKHP+SK RGITLDLGFSAF+++  E   D        TLVDCPGHASL+RTI+GGA I+D  ++V+D TKGIQ QTAE +V+ E++T D +VVLNK+DL
Sbjct:    8 VNVNVGVLGHVDSGKTSLVRALSTMLSTAALDKHPQSKERGITLDLGFSAFTVEAPEQLADTGVKQVQYTLVDCPGHASLIRTIIGGAQIIDRMILVVDVTKGIQTQTAECLVIGEILTDDLIVVLNKIDL 138          
BLAST of mRNA_M-pyrifera_M_contig84425.19688.1 vs. uniprot
Match: A0A140JWV9_GONPE (Eukaryotic elongation factor, selenocysteine-tRNA-specific n=3 Tax=Gonium pectorale TaxID=33097 RepID=A0A140JWV9_GONPE)

HSP 1 Score: 169 bits (427), Expect = 5.760e-47
Identity = 89/139 (64.03%), Postives = 107/139 (76.98%), Query Frame = 1
Query:    1 LKPEMHVNVGVVGHVDSGKTSLVRALSTTLSTAALDKHPESKRRGITLDLGFSAFSMKLGE-------DSVDVTLVDCPGHASLLRTIVGGASIVDFALIVIDATKGIQAQTAEAIVVAELVTSDAVVVLNKVDLATPE 396
            +K  +++NVGV+GHVDSGKTSLV ALST LSTAALDKHP+SK RGITLDLGFSAF++ L         D +  TLVDCPGHASL+RTI+GG  I+D  ++V+D TKG+Q QTAE +VV E+ TS  VV LNKVDL  PE
Sbjct:    1 MKRVLNINVGVLGHVDSGKTSLVAALSTQLSTAALDKHPQSKERGITLDLGFSAFTVPLPPHLSHLPYDELQFTLVDCPGHASLIRTIIGGVQIIDMMVLVVDVTKGLQTQTAECLVVGEVATSRMVVALNKVDLLQPE 139          
BLAST of mRNA_M-pyrifera_M_contig84425.19688.1 vs. uniprot
Match: D9CJ23_VOLCA (SelEFf n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D9CJ23_VOLCA)

HSP 1 Score: 168 bits (426), Expect = 6.900e-47
Identity = 88/135 (65.19%), Postives = 108/135 (80.00%), Query Frame = 1
Query:   13 MHVNVGVVGHVDSGKTSLVRALSTTLSTAALDKHPESKRRGITLDLGFSAFSMKLGE-------DSVDVTLVDCPGHASLLRTIVGGASIVDFALIVIDATKGIQAQTAEAIVVAELVTSDAVVVLNKVDLATPE 396
            +++NVGV+GH+DSGKTSLV ALST LSTAALDKHP+SK RGITLDLGFSAF++ + E       D +  TLVDCPGHASL+RT++GGA I+D  ++VID TKG+QAQTAE +VV E+ TS  VV LNKVDL  P+
Sbjct:    6 LNMNVGVLGHIDSGKTSLVGALSTCLSTAALDKHPQSKERGITLDLGFSAFTVPIPEHLAHVPYDELQFTLVDCPGHASLIRTVIGGAQIIDMMVLVIDITKGLQAQTAECLVVGEVATSRMVVALNKVDLLHPD 140          
BLAST of mRNA_M-pyrifera_M_contig84425.19688.1 vs. uniprot
Match: M2W4E6_GALSU (Selenocysteine-specific elongation factor-like protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W4E6_GALSU)

HSP 1 Score: 167 bits (423), Expect = 1.250e-46
Identity = 87/142 (61.27%), Postives = 114/142 (80.28%), Query Frame = 1
Query:    4 KPEMHVNVGVVGHVDSGKTSLVRALSTTLSTAALDKHPESKRRGITLDLGFSAFSMKLGEDS----VDVTLVDCPGHASLLRTIVGGASIVDFALIVIDATKGIQAQTAEAIVVAELVTSDAVVVLNKVDLATPEKIEKTRK 417
            K  +++N+GV+GHVDSGKTSLVR++ST LSTAALDKHP+S  RGITLDLGFSAF ++  ++     V +TLVDCPGHASLL+T++GG+ I+D  L+VID TKGIQ QT+E IVV ELVT  A++V +K+DL  P+  E+T+K
Sbjct:    3 KNTININIGVLGHVDSGKTSLVRSISTILSTAALDKHPQSSERGITLDLGFSAFMLQKDKEETSEQVQITLVDCPGHASLLKTVLGGSKIIDALLLVIDVTKGIQMQTSECIVVGELVTDKAIIVFSKIDLIPPD--ERTQK 142          
BLAST of mRNA_M-pyrifera_M_contig84425.19688.1 vs. uniprot
Match: A0A7S0RQL8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RQL8_9CHLO)

HSP 1 Score: 166 bits (421), Expect = 2.160e-46
Identity = 90/146 (61.64%), Postives = 110/146 (75.34%), Query Frame = 1
Query:   16 HVNVGVVGHVDSGKTSLVRALSTTLSTAALDKHPESKRRGITLDLGFSAFSM--------KLGEDSVDVTLVDCPGHASLLRTIVGGASIVDFALIVIDATKGIQAQTAEAIVVAELVTSDAVVVLNKVDL----ATPEKIEKTRK 417
            +VNVG++GHVDSGKTSL RALST LSTA+LDKHP+S  RGITLDLGFS F++         L  D+V  TLVDCPGHASL+RTI+GGA I+D  ++V+D TKGIQ QTAE +VV E++T   +VVLNKVD+       EKIEK +K
Sbjct:    7 NVNVGILGHVDSGKTSLARALSTLLSTASLDKHPQSSERGITLDLGFSGFTVPTPDNLKESLKHDNVQFTLVDCPGHASLIRTIIGGAQIIDLMMLVVDVTKGIQTQTAECLVVGEILTQHMLVVLNKVDMLPEATRDEKIEKMKK 152          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84425.19688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1SZG7_9CHLO1.270e-4964.38Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7S2RBF0_9STRA7.360e-4965.25Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A8J4FTB8_9CHLO2.180e-4863.50Tr-type G domain-containing protein n=1 Tax=Volvox... [more]
A0A2V0NPL3_9CHLO6.880e-4867.41Selenocysteine-specific elongation factor n=1 Tax=... [more]
A0A7S0CTB3_9EUKA8.900e-4856.76Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A2R5G8P6_9STRA1.460e-4767.18Selenocysteine-specific elongation factor n=1 Tax=... [more]
A0A140JWV9_GONPE5.760e-4764.03Eukaryotic elongation factor, selenocysteine-tRNA-... [more]
D9CJ23_VOLCA6.900e-4765.19SelEFf n=1 Tax=Volvox carteri f. nagariensis TaxID... [more]
M2W4E6_GALSU1.250e-4661.27Selenocysteine-specific elongation factor-like pro... [more]
A0A7S0RQL8_9CHLO2.160e-4661.64Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84425contigM-pyrifera_M_contig84425:460..876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score168.3
Seed ortholog evalue2.4e-39
Seed eggNOG ortholog248742.XP_005648643.1
KEGG koko:K03833
Hectar predicted targeting categoryother localisation
EggNOG free text desc.elongation factor
EggNOG OGs34H0I@3041,37TES@33090,COG3276@1,KOG0461@2759
COG Functional cat.J
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Exons1
Model size417
Cds size405
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.6753535-UTR-M-pyrifera_M_contig84425:459..4711622816751.6753535-UTR-M-pyrifera_M_contig84425:459..471Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84425 460..471 +
1692278157.0262148-UTR-M-pyrifera_M_contig84425:459..4711692278157.0262148-UTR-M-pyrifera_M_contig84425:459..471Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84425 460..471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.6881447-CDS-M-pyrifera_M_contig84425:471..8761622816751.6881447-CDS-M-pyrifera_M_contig84425:471..876Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84425 472..876 +
1692278157.0403721-CDS-M-pyrifera_M_contig84425:471..8761692278157.0403721-CDS-M-pyrifera_M_contig84425:471..876Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84425 472..876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84425.19688.1prot_M-pyrifera_M_contig84425.19688.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84425 472..876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84425.19688.1

>prot_M-pyrifera_M_contig84425.19688.1 ID=prot_M-pyrifera_M_contig84425.19688.1|Name=mRNA_M-pyrifera_M_contig84425.19688.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
MHVNVGVVGHVDSGKTSLVRALSTTLSTAALDKHPESKRRGITLDLGFSA
FSMKLGEDSVDVTLVDCPGHASLLRTIVGGASIVDFALIVIDATKGIQAQ
TAEAIVVAELVTSDAVVVLNKVDLATPEKIEKTRK
back to top

mRNA from alignment at M-pyrifera_M_contig84425:460..876+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84425.19688.1 ID=mRNA_M-pyrifera_M_contig84425.19688.1|Name=mRNA_M-pyrifera_M_contig84425.19688.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig84425:460..876+ (Macrocystis pyrifera P11B4 male)
TTGAAGCCCGAAATGCACGTAAACGTTGGGGTTGTTGGACATGTGGATAG TGGGAAGACAAGTCTAGTACGGGCATTGAGTACGACGCTATCTACAGCGG CACTGGACAAGCATCCGGAGAGTAAACGCCGTGGAATCACTCTTGACTTG GGTTTCTCGGCATTCTCGATGAAACTTGGGGAGGATAGTGTTGATGTTAC TCTTGTAGACTGTCCTGGTCATGCTTCACTACTTCGAACCATCGTAGGTG GTGCCTCCATCGTCGATTTTGCACTCATCGTGATTGATGCCACAAAAGGT ATTCAAGCACAGACTGCAGAAGCCATTGTGGTTGCAGAGCTTGTAACAAG CGATGCTGTCGTCGTTTTGAACAAGGTTGATCTTGCAACACCAGAAAAAA TCGAGAAAACGCGAAAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig84425:460..876+

>mRNA_M-pyrifera_M_contig84425.19688.1 ID=mRNA_M-pyrifera_M_contig84425.19688.1|Name=mRNA_M-pyrifera_M_contig84425.19688.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig84425:460..876+ (Macrocystis pyrifera P11B4 male)
ATGCACGTAAACGTTGGGGTTGTTGGACATGTGGATAGTGGGAAGACAAG
TCTAGTACGGGCATTGAGTACGACGCTATCTACAGCGGCACTGGACAAGC
ATCCGGAGAGTAAACGCCGTGGAATCACTCTTGACTTGGGTTTCTCGGCA
TTCTCGATGAAACTTGGGGAGGATAGTGTTGATGTTACTCTTGTAGACTG
TCCTGGTCATGCTTCACTACTTCGAACCATCGTAGGTGGTGCCTCCATCG
TCGATTTTGCACTCATCGTGATTGATGCCACAAAAGGTATTCAAGCACAG
ACTGCAGAAGCCATTGTGGTTGCAGAGCTTGTAACAAGCGATGCTGTCGT
CGTTTTGAACAAGGTTGATCTTGCAACACCAGAAAAAATCGAGAAAACGC
GAAAAATGCACGTAAACGTTGGGGTTGTTGGACATGTGGATAGTGGGAAG
ACAAGTCTAGTACGGGCATTGAGTACGACGCTATCTACAGCGGCACTGGA
CAAGCATCCGGAGAGTAAACGCCGTGGAATCACTCTTGACTTGGGTTTCT
CGGCATTCTCGATGAAACTTGGGGAGGATAGTGTTGATGTTACTCTTGTA
GACTGTCCTGGTCATGCTTCACTACTTCGAACCATCGTAGGTGGTGCCTC
CATCGTCGATTTTGCACTCATCGTGATTGATGCCACAAAAGGTATTCAAG
CACAGACTGCAGAAGCCATTGTGGTTGCAGAGCTTGTAACAAGCGATGCT
GTCGTCGTTTTGAACAAGGTTGATCTTGCAACACCAGAAAAAATCGAGAA
AACGCGAAAA
back to top