mRNA_M-pyrifera_M_contig8368.19544.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8368.19544.1
Unique NamemRNA_M-pyrifera_M_contig8368.19544.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig8368.19544.1 vs. uniprot
Match: A0A6H5L0V1_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V1_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.300e-16
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:  280 MALKRINKELQDLGKDPPANCSAGPVTDDLYHWQA 384
            MALKRINKELQDLGKDPPANCSAGPVTDDLYHWQA
Sbjct:    1 MALKRINKELQDLGKDPPANCSAGPVTDDLYHWQA 35
[Close]
BLAST of mRNA_M-pyrifera_M_contig8368.19544.1 vs. uniprot
Match: D8LQX5_ECTSI (UBC core domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX5_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.460e-16
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:  280 MALKRINKELQDLGKDPPANCSAGPVTDDLYHWQA 384
            MALKRINKELQDLGKDPPANCSAGPVTDDLYHWQA
Sbjct:    1 MALKRINKELQDLGKDPPANCSAGPVTDDLYHWQA 35
[Close]
BLAST of mRNA_M-pyrifera_M_contig8368.19544.1 vs. uniprot
Match: A0A3R7D664_9STRA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D664_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.630e-15
Identity = 41/61 (67.21%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:  202 SAVRAYF*GQVSPTGGLL*EGSRLDTMALKRINKELQDLGKDPPANCSAGPVTDDLYHWQA 384
            SA   YF     PT  L    S   TMALKRINKEL DLGKDPPANCSAGPV DDL+HWQA
Sbjct:   10 SAKNCYFSFSQRPTKSLPSSSSIARTMALKRINKELLDLGKDPPANCSAGPVGDDLFHWQA 70
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BLAST of mRNA_M-pyrifera_M_contig8368.19544.1 vs. uniprot
Match: A0A2R5GJC5_9STRA (Ubiquitin-conjugating enzyme E2 E2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJC5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 6.170e-15
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:  280 MALKRINKELQDLGKDPPANCSAGPVTDDLYHWQA 384
            MA+KRINKELQDLGKDPPANCSAGPV DDL+HWQA
Sbjct:    1 MAMKRINKELQDLGKDPPANCSAGPVNDDLFHWQA 35
[Close]
BLAST of mRNA_M-pyrifera_M_contig8368.19544.1 vs. uniprot
Match: A0A835ZQ60_9STRA (Ubiquitin-conjugating enzyme e2-16kda, ubiquitin protein ligase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ60_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.710e-15
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:  280 MALKRINKELQDLGKDPPANCSAGPVTDDLYHWQA 384
            MALKRINKELQDLGKDPPANCSAGP+ DDL+HWQA
Sbjct:    1 MALKRINKELQDLGKDPPANCSAGPIGDDLFHWQA 35
[Close]
BLAST of mRNA_M-pyrifera_M_contig8368.19544.1 vs. uniprot
Match: A0A0P1A4M0_PLAHL (Ubiquitin-conjugating enzyme e2-16 kDa n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A4M0_PLAHL)

HSP 1 Score: 74.7 bits (182), Expect = 9.260e-15
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:  280 MALKRINKELQDLGKDPPANCSAGPVTDDLYHWQA 384
            MALKRINKELQDLG+DPPANCSAGPV DDL+HWQA
Sbjct:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQA 35
[Close]
BLAST of mRNA_M-pyrifera_M_contig8368.19544.1 vs. uniprot
Match: W7TCU7_9STRA (Ubiquitin-conjugating enzyme n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCU7_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.130e-14
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:  280 MALKRINKELQDLGKDPPANCSAGPVTDDLYHWQA 384
            MALKRINKELQDLG+DPPANCSAGPV DDL+HWQA
Sbjct:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQA 35
[Close]
BLAST of mRNA_M-pyrifera_M_contig8368.19544.1 vs. uniprot
Match: A0A7S2ZCR1_9RHOD (Hypothetical protein n=5 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZCR1_9RHOD)

HSP 1 Score: 75.9 bits (185), Expect = 1.200e-14
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:  280 MALKRINKELQDLGKDPPANCSAGPVTDDLYHWQA 384
            MALKRINKELQDLGKDPPANCSAGPV DD YHWQA
Sbjct:    1 MALKRINKELQDLGKDPPANCSAGPVGDDFYHWQA 35
[Close]
BLAST of mRNA_M-pyrifera_M_contig8368.19544.1 vs. uniprot
Match: A0A0G4EH01_VITBC (UBC core domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EH01_VITBC)

HSP 1 Score: 74.7 bits (182), Expect = 1.730e-14
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:  280 MALKRINKELQDLGKDPPANCSAGPVTDDLYHWQA 384
            MALKRINKELQDLGKDPPANCSAGP+ DD++HWQA
Sbjct:    1 MALKRINKELQDLGKDPPANCSAGPIGDDMFHWQA 35
[Close]
BLAST of mRNA_M-pyrifera_M_contig8368.19544.1 vs. uniprot
Match: F0Y5R5_AURAN (Ubiquitin-conjugating enzyme n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5R5_AURAN)

HSP 1 Score: 74.7 bits (182), Expect = 1.990e-14
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:  280 MALKRINKELQDLGKDPPANCSAGPVTDDLYHWQA 384
            MALKRINKELQDLG+DPPANCSAGPV DDL+HWQA
Sbjct:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQA 35
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8368.19544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0V1_9PHAE1.300e-16100.00UBC core domain-containing protein n=1 Tax=Ectocar... [more]
D8LQX5_ECTSI1.460e-16100.00UBC core domain-containing protein (Fragment) n=1 ... [more]
A0A3R7D664_9STRA1.630e-1567.21Conserved oligomeric Golgi complex subunit 8 n=1 T... [more]
A0A2R5GJC5_9STRA6.170e-1591.43Ubiquitin-conjugating enzyme E2 E2 n=1 Tax=Hondaea... [more]
A0A835ZQ60_9STRA8.710e-1591.43Ubiquitin-conjugating enzyme e2-16kda, ubiquitin p... [more]
A0A0P1A4M0_PLAHL9.260e-1591.43Ubiquitin-conjugating enzyme e2-16 kDa n=1 Tax=Pla... [more]
W7TCU7_9STRA1.130e-1491.43Ubiquitin-conjugating enzyme n=1 Tax=Nannochlorops... [more]
A0A7S2ZCR1_9RHOD1.200e-1494.29Hypothetical protein n=5 Tax=Rhodosorus marinus Ta... [more]
A0A0G4EH01_VITBC1.730e-1488.57UBC core domain-containing protein n=1 Tax=Vitrell... [more]
F0Y5R5_AURAN1.990e-1491.43Ubiquitin-conjugating enzyme n=1 Tax=Aureococcus a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8368contigM-pyrifera_M_contig8368:6832..7215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog2880.D8LQX5
Preferred nameUBC4
KEGG rclassRC00052,RC00156
KEGG koko:K00252,ko:K06689,ko:K10746
KEGG ReactionR02487,R02488,R10074
KEGG Pathwayko00071,ko00310,ko00362,ko00380,ko01100,ko01120,ko01130,ko03430,ko04013,ko04120,ko04141,ko04624,map00071,map00310,map00362,map00380,map01100,map01120,map01130,map03430,map04013,map04120,map04141,map04624
KEGG ModuleM00032
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000502,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006515,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0007088,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009896,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010559,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010965,GO:0016485,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023052,GO:0030071,GO:0030163,GO:0030674,GO:0031146,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031331,GO:0031399,GO:0031461,GO:0032182,GO:0032268,GO:0032270,GO:0032436,GO:0032446,GO:0032933,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034605,GO:0035103,GO:0035966,GO:0035967,GO:0036211,GO:0042221,GO:0043130,GO:0043161,GO:0043162,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045893,GO:0045931,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051603,GO:0051604,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051788,GO:0051983,GO:0051984,GO:0060049,GO:0060090,GO:0060255,GO:0061631,GO:0061650,GO:0062033,GO:0065007,GO:0070647,GO:0070887,GO:0071218,GO:0071310,GO:0071501,GO:0071629,GO:0071704,GO:0080090,GO:0090068,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902680,GO:1903018,GO:1903052,GO:1903364,GO:1903506,GO:1903508,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990234,GO:2000112,GO:2001141,GO:2001252
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0417@2759
EC1.3.8.6,2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400,ko04121
Exons1
Model size385
Cds size105
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816744.650018-UTR-M-pyrifera_M_contig8368:6831..71101622816744.650018-UTR-M-pyrifera_M_contig8368:6831..7110Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8368 6832..7110 +
1692278152.6009405-UTR-M-pyrifera_M_contig8368:6831..71101692278152.6009405-UTR-M-pyrifera_M_contig8368:6831..7110Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8368 6832..7110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816744.6616113-CDS-M-pyrifera_M_contig8368:7110..72151622816744.6616113-CDS-M-pyrifera_M_contig8368:7110..7215Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8368 7111..7215 +
1692278152.613574-CDS-M-pyrifera_M_contig8368:7110..72151692278152.613574-CDS-M-pyrifera_M_contig8368:7110..7215Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8368 7111..7215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8368.19544.1prot_M-pyrifera_M_contig8368.19544.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8368 7111..7215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8368.19544.1

>prot_M-pyrifera_M_contig8368.19544.1 ID=prot_M-pyrifera_M_contig8368.19544.1|Name=mRNA_M-pyrifera_M_contig8368.19544.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=35bp
MALKRINKELQDLGKDPPANCSAGPVTDDLYHWQA
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mRNA from alignment at M-pyrifera_M_contig8368:6832..7215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8368.19544.1 ID=mRNA_M-pyrifera_M_contig8368.19544.1|Name=mRNA_M-pyrifera_M_contig8368.19544.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig8368:6832..7215+ (Macrocystis pyrifera P11B4 male)
GTTCGCCTCGAGATTGAGCATATCGACGTCCGGTTGAAGTCGAGAAGCTC
TCCCTCTCCCCACCAGAACCCAACCCCTGTTTCCCCCCGGCCGACGTGCT
TTCGACAGTCCCGTGAGCACCGTAGGAAAAAAGAGTTCGCAGAAATTTTG
GGAAGTACTAAAGCTCCGACCTACTAACTGAGTACGAGTGCGCAAGGTGG
GTCAGCAGTTCGAGCTTATTTTTAGGGCCAGGTGTCTCCGACTGGGGGGT
TACTGTGAGAGGGGAGCAGGCTAGACACGATGGCGCTGAAGCGTATCAAC
AAGGAGCTGCAGGACTTGGGCAAGGACCCACCGGCGAACTGCAGCGCCGG
GCCAGTCACGGACGACCTGTACCATTGGCAGGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8368:6832..7215+

>mRNA_M-pyrifera_M_contig8368.19544.1 ID=mRNA_M-pyrifera_M_contig8368.19544.1|Name=mRNA_M-pyrifera_M_contig8368.19544.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig8368:6832..7215+ (Macrocystis pyrifera P11B4 male)
ATGGCGCTGAAGCGTATCAACAAGGAGCTGCAGGACTTGGGCAAGGACCC
ACCGGCGAACTGCAGCGCCGGGCCAGTCACGGACGACCTGTACCATTGGC
AGGCAATGGCGCTGAAGCGTATCAACAAGGAGCTGCAGGACTTGGGCAAG
GACCCACCGGCGAACTGCAGCGCCGGGCCAGTCACGGACGACCTGTACCA
TTGGCAGGCA
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