mRNA_M-pyrifera_M_contig836.19528.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig836.19528.1
Unique NamemRNA_M-pyrifera_M_contig836.19528.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: A0A6H5JR04_9PHAE (Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR04_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.510e-63
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 3 
Query:   69 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGSRGRG 368
            MKLVRFLMKMNNETVTVELKNGTTVHGTV+SVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGK+KDG+RGRG
Sbjct:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVASVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRG 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: A0A835YYQ8_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ8_9STRA)

HSP 1 Score: 159 bits (401), Expect = 4.770e-48
Identity = 78/96 (81.25%), Postives = 86/96 (89.58%), Query Frame = 3 
Query:   69 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGS 356
            MKLVRFLMK+NNETVT+ELKNGTTVHGTV+ VDV+MNTHLK VKVTPKG+N    D+LSIRGNNIRCYILPDN+NLDQLLIDDAPK KPG  K G+
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTTVHGTVAGVDVNMNTHLKGVKVTPKGRNTQDCDTLSIRGNNIRCYILPDNINLDQLLIDDAPKAKPGIPKAGA 96
[Close]
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: A0A7S2FU32_9STRA (Small nuclear ribonucleoprotein Sm D1 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU32_9STRA)

HSP 1 Score: 151 bits (382), Expect = 4.220e-45
Identity = 75/101 (74.26%), Postives = 86/101 (85.15%), Query Frame = 3 
Query:   66 TMKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGSRGRG 368
            TMKLVRFLMK+NNETVT+ELKNGT V GTV+ VDV+MNT++KNVKVT KGKN   YD+LSIRGNNIR Y+LPD++NLD LLIDDAPKQK  K+  G RG G
Sbjct:   21 TMKLVRFLMKLNNETVTIELKNGTVVQGTVAGVDVAMNTYMKNVKVTVKGKNTVNYDTLSIRGNNIRYYLLPDSINLDALLIDDAPKQKAPKVAAGGRGPG 121
[Close]
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: T0RK40_SAPDV (Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=T0RK40_SAPDV)

HSP 1 Score: 150 bits (379), Expect = 8.580e-45
Identity = 73/88 (82.95%), Postives = 81/88 (92.05%), Query Frame = 3 
Query:   69 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK 332
            MKLVRFLMK++NETVT+ELKNGT VHGTV+ VD+SMNTHLK VK+T KGKNPT+ DSLSIRGNNIRCYILPD+LNLD LLIDD PKQK
Sbjct:    1 MKLVRFLMKLSNETVTIELKNGTVVHGTVTGVDISMNTHLKAVKMTVKGKNPTSLDSLSIRGNNIRCYILPDSLNLDTLLIDDTPKQK 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: A0A397E2M2_9STRA (Small nuclear ribonucleoprotein Sm D1 n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A397E2M2_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.030e-43
Identity = 76/97 (78.35%), Postives = 85/97 (87.63%), Query Frame = 3 
Query:   66 TMKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGS 356
            TMKLVRFLMK+ NETVT+ELKNGT VHGT+S VD+SMNTHLK VK+T KGKNPT+ DSLSIRGNNIR YILPD+LNLD LLIDD+PKQK   +K GS
Sbjct:   31 TMKLVRFLMKLTNETVTIELKNGTVVHGTISGVDISMNTHLKVVKMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK---VKAGS 124
[Close]
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: A0A024TLD1_9STRA (Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLD1_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.280e-43
Identity = 75/96 (78.12%), Postives = 84/96 (87.50%), Query Frame = 3 
Query:   69 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGS 356
            MKLVRFLMK+ NETVT+ELKNGT VHGT+S VD+SMNTHLK VK+T KGKNPT+ DSLSIRGNNIR YILPD+LNLD LLIDD+PKQK   +K GS
Sbjct:    1 MKLVRFLMKLTNETVTIELKNGTVVHGTISGVDISMNTHLKVVKMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK---VKAGS 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: A0A7S2SJR6_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJR6_9STRA)

HSP 1 Score: 146 bits (369), Expect = 5.980e-43
Identity = 73/98 (74.49%), Postives = 82/98 (83.67%), Query Frame = 3 
Query:   69 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGSRG 362
            MKLVRFLMK+N ETVT+ELKNGT V GTV+ VDV+MNT++KNVK+T KGKN   YDSLSIRGNNIR YILPDNLNLD LLIDD PK KP K++ G  G
Sbjct:   23 MKLVRFLMKLNKETVTIELKNGTVVQGTVAGVDVAMNTYMKNVKLTVKGKNTVHYDSLSIRGNNIRYYILPDNLNLDTLLIDDTPKAKPPKVQTGMSG 120
[Close]
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: W7T3T7_9STRA (Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T3T7_9STRA)

HSP 1 Score: 145 bits (367), Expect = 7.370e-43
Identity = 74/100 (74.00%), Postives = 85/100 (85.00%), Query Frame = 3 
Query:   69 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGSRGRG 368
            MKLVRFLMK+NNETVT+ELKNGTT+ GT+S VDVSMNT+LKNVKVT KGKNP +Y+SLSIRGNNIR YILPD LNLD LL+DD PK K   +K G++  G
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNK---LKPGAQAGG 97
[Close]
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: A0A7S2V5U0_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5U0_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.060e-42
Identity = 74/100 (74.00%), Postives = 84/100 (84.00%), Query Frame = 3 
Query:   69 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK--PGKIKDGSRG 362
            MKLVRFLMK+NNETVT+ELKNGT VHGTV+ VDVSMNT+L+NVK+T K KNP + ++LSIRGNNIR Y+LPDNLNLD LLIDD PKQK  PG    G RG
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTVVHGTVAGVDVSMNTYLRNVKMTVKQKNPVSLETLSIRGNNIRYYLLPDNLNLDTLLIDDTPKQKVRPGVAMRGGRG 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: K3WSY3_GLOUD (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSY3_GLOUD)

HSP 1 Score: 144 bits (364), Expect = 3.140e-42
Identity = 73/102 (71.57%), Postives = 86/102 (84.31%), Query Frame = 3 
Query:   69 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK--PGKIKDGSRGRG 368
            MKLVRFLMK++NETVT+ELKNGT VHGT++ VD+SMNTHLK+VK+T KGKNP + DSLSIRGNNIR YILPD+LNLD LLI+D P++K   G    G RGRG
Sbjct:    1 MKLVRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKSVKMTVKGKNPVSLDSLSIRGNNIRYYILPDSLNLDTLLIEDTPREKVKAGAPAAGGRGRG 102
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR04_9PHAE1.510e-6397.00Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ecto... [more]
A0A835YYQ8_9STRA4.770e-4881.25Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Trib... [more]
A0A7S2FU32_9STRA4.220e-4574.26Small nuclear ribonucleoprotein Sm D1 (Fragment) n... [more]
T0RK40_SAPDV8.580e-4582.95Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Sapr... [more]
A0A397E2M2_9STRA1.030e-4378.35Small nuclear ribonucleoprotein Sm D1 n=6 Tax=Apha... [more]
A0A024TLD1_9STRA2.280e-4378.13Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Apha... [more]
A0A7S2SJR6_9STRA5.980e-4374.49Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhiz... [more]
W7T3T7_9STRA7.370e-4374.00Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Nann... [more]
A0A7S2V5U0_9STRA1.060e-4274.00Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Fibr... [more]
K3WSY3_GLOUD3.140e-4271.57Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Glob... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig836contigM-pyrifera_M_contig836:12571..21352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue1.6e-48
Seed eggNOG ortholog2880.D7FT15
Preferred nameSNRPD1
KEGG rclassRC00046,RC00150,RC00180
KEGG koko:K00505,ko:K10645,ko:K11087
KEGG ReactionR00731,R02078,R02363,R02383,R04693,R04884
KEGG Pathwayko00350,ko00950,ko00965,ko01100,ko01110,ko03040,ko04916,ko05322,map00350,map00950,map00965,map01100,map01110,map03040,map04916,map05322
KEGG ModuleM00042,M00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryother localisation
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031047,GO:0031090,GO:0031323,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0035194,GO:0035770,GO:0036464,GO:0040029,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045292,GO:0045495,GO:0046483,GO:0046540,GO:0046907,GO:0048519,GO:0050789,GO:0050794,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0060293,GO:0065003,GO:0065007,GO:0070013,GO:0070990,GO:0071004,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0098588,GO:0098805,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990234,GO:1990446,GO:1990904
EggNOG free text desc.spliceosomal snRNP assembly
EggNOG OGsCOG1958@1,KOG3428@2759
Ec32 ortholog descriptionSmall nuclear ribonucleoprotein-associated protein D1
Ec32 orthologEc-24_004450.1
EC1.14.18.1,2.3.2.27
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03041,ko04121
Exons2
Model size368
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig836.19528.1prot_M-pyrifera_M_contig836.19528.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig836 12639..21352 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816743.57026-UTR-M-pyrifera_M_contig836:12570..126381622816743.57026-UTR-M-pyrifera_M_contig836:12570..12638Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig836 12571..12638 +
1692278152.1759057-UTR-M-pyrifera_M_contig836:12570..126381692278152.1759057-UTR-M-pyrifera_M_contig836:12570..12638Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig836 12571..12638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816743.583123-CDS-M-pyrifera_M_contig836:12638..127701622816743.583123-CDS-M-pyrifera_M_contig836:12638..12770Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig836 12639..12770 +
1692278152.191639-CDS-M-pyrifera_M_contig836:12638..127701692278152.191639-CDS-M-pyrifera_M_contig836:12638..12770Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig836 12639..12770 +
1622816743.598155-CDS-M-pyrifera_M_contig836:21184..213521622816743.598155-CDS-M-pyrifera_M_contig836:21184..21352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig836 21185..21352 +
1692278152.2037494-CDS-M-pyrifera_M_contig836:21184..213521692278152.2037494-CDS-M-pyrifera_M_contig836:21184..21352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig836 21185..21352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig836.19528.1

>prot_M-pyrifera_M_contig836.19528.1 ID=prot_M-pyrifera_M_contig836.19528.1|Name=mRNA_M-pyrifera_M_contig836.19528.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGK
NPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGSRGRG
back to top

mRNA from alignment at M-pyrifera_M_contig836:12571..21352+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig836.19528.1 ID=mRNA_M-pyrifera_M_contig836.19528.1|Name=mRNA_M-pyrifera_M_contig836.19528.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=8782bp|location=Sequence derived from alignment at M-pyrifera_M_contig836:12571..21352+ (Macrocystis pyrifera P11B4 male)
GCTGCACGTAGGAGAGAGTCGAGGAGGAGGAGAAGCAGGAGCGGGAGGAG
GAGGAGGCGGCGGCGACCATGAAGCTCGTGCGGTTCTTGATGAAGATGAA
CAATGAGACGGTCACCGTCGAACTCAAGAATGGGACGACTGTTCACGGGA
CAGTGTCCTCCGTGGACGTGAGCATGAACACTCACCTCAAGAACGTTAAG
GTGAGAACTAGAGGGAAGATCGCGCTCGAGACGGAGAGAGGTGTAGGGGT
GTAGGGCTAGAGGTCTGTCTGTGGCTCGTGTTGCCGCCTGCATGTGCTGC
TTTCTATGCAGGCCAGGCCAAATTGTGGTTTATTTCTAGTTGGTCGGTGT
GCTCCTTTGGGATACACTGCTCGGATGCGCTCAGACAAGCCGCATCCCCT
TCCCTCCCCCTTTCTTTGATTTTGTCGGCGGAGCCTCGAGATCTCGAGAA
TAGCAAAGCAAAACTATAGCAGACCCAAGAGCAAGTCAAAACATCGCCAC
GCGAGGCAAATAAAAAACAATCCAAAACAAGAAAATGAGAGCCAAAAAGG
CAGAGCAAAGCGGAGCAGAGCAACGCAGACCAGAGTAATGCAGAGCAGAG
TAGGGCAGAGCGGAGCGGGACAGAGCAAAGCAGAGCAGAGCAGAGCATGG
CATGGCAGACCAACGCATGGCGCCGCGGAGCAACGCATTGCAAGGCAAAG
CAAAGGAAAGCAAAGCAGAGCAAAGCACGGCATGGCAAATCAAAGCACGG
ATTGCAAAGCAAAGCAAAGCCAAGCAAAGCACAGCGCAACAACCAAGGAA
TAGCAAAGCAAAGCATGCTCGTACCAACCCAAGACAGCAAAGCATAACCC
AAACAAGCACCAGCGCTACGAGTAGCAGAGTAAAGCAGAGCGAAACAGAA
CGAATAACAGGTACGGAAAACCGAACCTACCGTTAGTTGACGTTACGTCG
ATGGCTGTCGTTAGGCTGAATCTTATGGGAGCCGCACCCGGAAAACAGAA
CTGGCATGCACTATTTTCGTATGCCCTAGATTCGTATATCGAGTTTCGTC
TTTTCCTCTTACGTCGTATGGTGTTTTGTGTATGTATGCCGGGGTTTCGT
TTGAGCTGGGCAGTGGGAGTACGTTGGAGGGAGGATTTACCGCAATAATA
TTTGAATTCGGCGAACACACAGCAGTACACGGCGCCCACGCATCCTGTTT
GGTACCTGCCGGGTAGCATGGGGCTTGCTTTCGCAGACTCGAGCTTCCTG
GACTGGGTTGGCTTCCTTCGACGAACGGTCCCCAAGCTTGGCAGTCTACT
GTAGCATGAACACGACGACAACCGTCAAGAGCATGCATGCGGTGTAGTCG
GTTGTTCGGCATCACCGGAGCTTGGAGTCTCTAGGTACCGCTATATGCCG
GGATACCATGTCAGAGATACCGAGAGAGTGCAGCAGTAGTAGCGATGATA
TGTACAAGTATTAGGCCCGCCACGTTATGCCTCCTGTGTGGGGTTCAAGA
CCAGTTTCGGCCAGCTCTGGGACCGTGATCTGGTGTCTGGTTTCGTCTGG
CCAGGCCATTTTAGAGATTTCTGTTTTTTTTCCATCGATAAGAATCGATA
AGTCGGATCTGGCACGAAATTATTCCTGGATCTCTCTATAAACCCTGTTT
TATTTTCCAGTTTCGGCTGCCGTAAGAGTTAGCCTTATGCTTGTTTCGTA
TTAATACTAGATGATTGCCATTCATACCAAAGTCATCGCAAACCAAATGC
AAAGCAAAAGCAATGCATAGCACAGCAAACCCAACCACAGCAAAGCATAT
ATAGCCAAGCACAACACAACATAGCAAAACACAGCATAGGCCAGCACAGC
GAATCATACATGAAAATTACGAAAGAAAACACAGCAATGCACAGCAACAC
ACGCAAACCATAGCATAGCATAGCATAACATAGCAAAGTCGTGAGGACTT
GACAGCTTTCCACAAGACCGTCTGCACCCACGCTGTGATATATGGTATTA
ATAGTGTGGTGAAGTGAAAATGAAAATGACGTCGGTCGGTTTTCGGTTTT
TCGCCGAAAACGTTTGTCGTTTTGGTCGTTTTTTGGAAATGAACTGATTA
TTCAAATAAAATCGGTTTCCCCTCTTGCAAAACCGACAAAAAAAAAGGTT
TTCAGTTATCGGTTTACACCACTGGGTACGTAATGGTGTACGGTACTGCT
AACTGTACCACTTGTCACATCGGCACTGCTGTACGCTACAGCAGTAGTAT
TCATAAACTACCGTACATACACCACATACTTTGATGAGGGTATTAACTAC
TGGTACTACCGCCGTATGTCATTATCACACGGGTGATAAGATAACACACC
CTCTGGGATGAATTTCGGGACCTTTTTGCTCCAAAGCATGCCTTAAGGGG
GACACACACTACGAAAGTGGCGACTTTGGAAATATCTCGTCAAGATATTC
GATATTTTCCATAGACGCGTGGCTCGGCGTTTACACTATATTAATAGAAA
GATTATTGTCGAGATCTTTCCCTAGACGCGTGGCTCGGCGTTTTTCATTC
TCCCCATTTTCGAGAATCAGCTGCTTTGTTCTGGTCACTCTTATCACACG
TGTTGTACGGTGTGAGCATGTGCTATCAATATTGCTAGTACTACGTATTG
ATAGCAAGCTTACGCCACCGCGGCTACCGCTGCCACCCCACCCCTCTCGG
TGATCTGCCGCTGGAAAAAGCGAGGCTACCGAGAGCGGGGAGCATACAGA
GCGCGACAGCGAGTCGGATGGCGAGCCTCATGTGGATGGCCGAGGAGATG
TTCATTGTATGATGTGGTATGAATTGCACCACAGGGTACGATATCTTTGA
TCATATATTGGTAGCACGCACTCACTTGCCTTGGAAGCACCACAAACGTG
TCTTGATAACGCCACAATGGTACCTTGATAGTGGTAGCAACCTTGGGTTG
ATAATTCCACGCACCCAACCATGATATCCCCACAAGCCAAAAGCTTCGCT
TGGAATTGTGGCACCAGAGTTACCCTGATTTTGTCACAAATTTGGCCTTG
TAAACACTATTTCTAACGCCACAGGCTTACTGCTGGACAAGTTCAGAATC
ACGAACGTACCTTGGTGCTTGGGGGAGGACCAGAAACTTACCTTGATGGC
ACCACGCCTTGCCAGCACCACAATGCTCCTGTAGTTTGCGCCGCACGCTC
ACCTTAGTACCAGCACAGCTTATTTTGATAGCACCACGAACTTACTTATT
AGTAGCACCACAACTGACCTCATTAGCGCTACCGCTTGGTCTACAGTAGC
TTGGCCTGCAGTAGCTTGGCCTACAGTAGCCTGACAGCACCTAACCTACT
GCAGCTCGAAAGCACCCCAACCTTACAATAGCTTCCAGTAGCTTATTTGC
ACGGCAAGGTTATCTTGATGGCACCTCAAACTTAGCTGGATGAGCACCAC
CTGCTTGATCTAGATTGTTAGCACCACAACATTAGCTTGACATTATGTCT
CCTCAGCCTTGAACGTCGATTGAACGCCATGTGCGCAGTCTGATAATTCT
TCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AGGAGGCAGGAGCAGCAGCACGAAGTGGTACTGCTGTAGGATCACCAGCT
ATGTATGGCACTTTCGGGTACGAAGCGCTTGCTGCGGTTTGACCCAGTCA
CCCGCATAGTATATAAAGGTAGATGTATTTATGCCAGGTTTCGCGGGTAT
GGTTTTGGGGTCAATACCAAGATTACTTTCTGCCCGGGTATATTTGGGGT
GGGGGGGTGTACTCGATATCATGCATAGCCGTAGTCGCATGGCTTTTTTT
CGTGGTGGGGGGGGGGGGATGCCTCCGCTGTGGTGTCGAAGTTTTCCACC
AAACTCATATTTGCACGCTTAGTATATACCATACTTATAATAGGATTAAT
ACTACAATATCAACCTGTACTACTGGGTGTGCATGTTGTCAGGTTTGAGA
GTGGTCTCCGTAACCCTAAGTTTTGTACACAACAGGTTCGCTACCTACGT
TAGTGGGTATACTATCCAAGTGTCAATACGGAGTAGTATGTGTTTTGGAG
AGACGGGTACTGGTTCGGCGCTGTAACATGGGTAAAACGTTCTCGTTGGT
AAAATCTACGCCGTTCTACCCGTGTATGAACCCGGCTATGCCCCTACCCC
CTACCCCCTACCCCCCTTTGGTCCCTCCTTGTTTTTAGTTTATAGCGCAA
AATACTTGTACGAGGTACTTTCTGTATCATACCCTGTTTACTGTTTACCC
CCCTCCCCTTTCTGGGTCTCAATAACATGTAGATTGGTGCCCATGTCTTT
TTTTCGTATACCCCGGGGTACCCCCTGTACTGGTGTAGTGGTGCACTGCT
CTATAGCTGTAGTGCTCCCATTGTTGATAGGGACATGACTCTTCCACCAT
GTCGCACTCTTTCTCGTAATATATATACGCGACGAGCCTGGGGAGGGGTT
CGCCCCGGGAATCAATCAACGCCGAGACCGAGTCGAACTCACAAAATTGT
ACTTCGTGTATTGTTTTGTTCAGAAAGGATATAACCTACTTGCCGACGTA
CTGTGATAGTCTACTGAGTCAATAGTAGGCTATTGCTAGTCAGTAGGCTT
ACTCGTAGGAATAATAGGTACTAGTCAGTAGGCTAGTCGTAGGATTCATA
GGCAAGGTTGTCCCCTTCAAGCAGCACTTTTTATTTCAGGGCTCTTTGGC
AGGACACGCTGTTTCTCCTTCGGGCCTTTTCTAAGGTTTGATCGCGTTTG
TTGTCTCTTGTCGTACGGTATAACATGGCATGCAAGCGTACAAGGTCCCC
CTTCGAGATGTGGTTTACTTGAAACCCCAGGGGGGTTCGTGTACCAGTAT
CAAATATCGGGATGGTATCGATTACGTTCTCGTAGTTTTACTGTTTATCG
GTATCGTATCGAAATTGATTCCGATATCGATATCCACCACTATTAGGGCA
TGCCTTTTACCGTAATAGAGCATGCCTTGTTACCTTACTGTGATAGAGCA
AGCCGGAGATCCTATGGAATTTTTCCAACAGGAGACCGAGAACCTTCGTC
ACTGTTGGTGCTTATAACCCTCCCTGAGTACTTGAGAGAGGAGAATTGTC
GATCAAAAGCGATGATTTCAGTGGTAACGGCCTACTTTCGCAGGGGTTGG
GGGAAGGACGATACACATCGGTGTCCGAGTTAGAACGCAGTAAGGGGTCG
CTTGTACGGCCCGGGCGCAAGATGAAATTACTGCTGCTGCTGCTGCTGCT
GCCCATGCTGCCGGGGGCGCTGACGCTGCTCCTATGCGGTTCAATGGTTG
ATGACACCAAAGAAAGTTTCCAACCATTCTTGATTTTTTATCGTTTGATT
GCTTTGGTCGCCATCCCTCAAGGGGGTCCCAAGGCGGTTTCACCAGCACT
ATAGTAGACATTAATAGTCCATTTGAAGGGACCCTATAACGCATTAATGG
AGTAGTATACGTAGAGTGCGGCACGGGGGCATCATGACACTAACCGCTCG
TATTGCTGGGCGCTCACGCTTTTCTATAGTTCCTACACGGTGTGATAACA
CCAACCATTGATTCATTGTTTTGGTCGCTATCCCTCAAAACGGAGTCCCG
AAGGGGTGTTCCAGTACTAGGGCCCTACGTATGAACAGATGAACAGTGCG
TTCGGGATTGTAGGTCCCTTATATAGGTGCGGTAGTCCCCTATCAGAGTT
AGTTAGAGTTGGTACCGGCCCCTTGCAGTCAGTAGAGCACAATTTTGAGG
TCCGTTATACTGGCACCGTTTGCCCTTAGTAGCGGTCGGTTAAAAGGGGC
TGTGCGTACTGTTGTATTGGCTCCACCAGCCCTCAATGACAGTTACACGT
ACCCACTTGCGCGGATTTCGAGCGAGAGCTACGACCCTATCTGATCGTTG
CCTGCGGCTACTGTGAAACCTTTTAGTATCTGCTTGAAATTTGAGTGGTT
TGTCCCCCCCCCCCCCCCTCCCTATAAATTGTGACTGCGGTTCTACAAGG
GTTAAGCGAGTCACCGATGGCCTTCGCATGTATGCACTCTGCATCACCAC
TTCTTGTTCTTGTTCTTGTTCTTGTTGGTGTTGTTGGTGGTGTTGTTGGT
GGTGTTGGTGGTGGTGGTGTTGTTGGTGGTGTTGGTGGTGGTGTTGGTGG
TGGTAGTGTTGTAGTGGTGTTGTAGTGGTGTTGGTGGTAGTAGTGTTGTA
GTGGTGTGGTGGTGGTGTTGGTAGTAGTGTTGGTGGTGTTGTTGTTGGTG
TTGGTGTTGGTGTTGGTGATTTTTTGTTGTTGTTGGTGCTGTTGTTGTTA
TTGATGGTGTCACATTTTGTGTGTTGTATTAGTAGTAGTGTATCAATAGT
CCATCGTCACGACACGGGTTCCTGATGTTCCTCGTCTCACATTTGCTCGC
TACCACAAACCAGCCCGCGACAGCGCCTTTCGCTATGTGCAGGACGGGTC
GGCACAAAACTTTGTGCAGGACGTGTGTGGTCAAAAACCAACCTTGCACA
TCGGCCCGGACCAACCCGATCCCAAGTCTACTGTAACTAGCCCTAACCCG
AGCCCTAACCCGAACGCCAACCCTTTGGGGCCTCAAGGTCGGCAGGGTCA
GTCACGCGGCTTCGCCCGGGCGGCCGAAAGGCCGGGCTTGACCAGCAAGA
CCCGCATCCTGCACAACGCTTTGTGCCGACCCGTCCTGCACACAGAGGGC
GAGTCCGTAACAGCGGGTTTTCCTATTTTGAGAATTGGCTTTCCGACGAG
AATGATAGTGGTTTTGTTTTTCAAGAGATGCTTTACCCTCCCTCACAAGT
AAAAACGTACCTGGCACACCGTAAACATTGCCATTTGCGGCAGCTGTCGA
CCACCCCAATACAAACCCAAATCAGCGTTGATTGGCGGTCTGGAGGTATC
GATGATCCAAGAACTCGTCACGAATGGGGCGGCGCCTCCCGCCTTAGTGC
CATTTCACTTCTATCCTCTGTTTTACCTGGTACGAGCCTGTCACGGCTGA
TTTTGATTTCGATCTTGATTTTGATTGGTGAAATGGTTTACCTTTCGTCA
GTACCACACTATTCTTGTAAGCGACCATTGATTCATTTTCGACCCGTGAG
GGAAATCCTCCTTTGACAAAAGAAAAAATAACAATTTCGATTGTCGTTCT
CGTGGGAAAGGCCATTATCGATTTCGGTAGGAGGATCACCTGTTCCGTGG
TCGCCACAAGGCACAAGGAATCCACACATGTACAGGTAGAATACAGTATG
TAGGAACCCCCCCCCCTCAAAAGAACCGAACCGGGGACCCATGGATGGCA
GTCAGTTCCACAGCATGTTGTACAAGCCCAGAAAAAAACGAGACACGTCA
CGTATTCATGGCATACCTGTTATTATTTTTGTTTGCCTCCAAGCACGTGT
GGCTTGCTGGTCTGTGCGGGTTTTGACTTGACCTTCTGAGGCGCTTCCGT
GCTGAACGGCATAGACGAAAACACGCTGAGTACTACGAACCAACCTGCTG
TACGTAGGGTACTGGTAGTGTCGTTGAATACAGAAGGACGTTCGATGCGA
TGCCCGATACGCAAGAACAAAATCGGTACGTATCGGTTTCGATGTTCGAT
GCATCGAATCTTTGGCCCAGTACCCCCCCTCCTCCTAGTTTGCTGTGACC
ATCACCCCCCAACCCCCTTCGCTTGCCGTTTTCCACTCCACCCAACACCT
CTACGATACCTTGGGCATTAATCCCGCACTAACCCTCTCGAGACGTGCAA
GGGAGAAATTGACGAGATGAAGTGACTATTGATCACAGCAACGGCCAACG
TACTGCAGGATTGGGGGCTGATACAATGGTTGGTGTCCGAGATACAATGG
TTGATTGCAAGGAGTCGTACGGCACGATCTGCTATTAATACCTATACACC
CCTACTGCTAATACTGCTAATACTGCTAATACAGATGGCAGCTGACGCGC
TGACGCTGATGACGCTGCTTGTATGTAGACTGACGTTAACGCCGAACTAT
CAATGTTGGTCGCTATTTTCAGCACCAAGGGGGGCTAGTGCCTCTGCTCT
CTACTGCCTGCTGTCTGCTGTCTGCTCTTTGCTGTCGTCACCAACCTTCC
TCCCTCGCTCACCCATCCCCCCGACCCCCTTGGCTCCCCCTACCCCGTCC
ACCACGTCTCCTGTTACCACGAACCTCCTCCCTCCTCCCCCCCTCCCCCC
CTCTCATTCATGCCGCTGCTGTGACGATCAACCACCCCCCAGAAATTAAA
TTACATTAATTCATTGACGCTGTCATCCACATGCAAAAAAGTCCGCCTCA
AAAGCGATTCTTTGTAGGATGCAGCTCACCCTTCATGCGACTCTCCCAAC
ACCCCACGTTTCGCTTCGCGCTTGGTGCAGGCAATGCCTGTCTGGTTGGT
TAAAACCCGACGTGCTCCGTCCCGGCATTATAGGGATGCGAGGGTCTATG
GTGGTACGTACGACTACGGCCATACATGACAATGAGTACCCCCCCCACAC
ACACCTCAATAAACCCCTTTGATCCCCCCCCCCCCCCACTCCCGCCCCAC
GCCACCCTACGCAGGTTACCCCCAAGGGGAAGAACCCGACGACGTACGAC
AGCCTCTCCATCCGAGGCAACAATATCCGCTGCTACATTCTCCCTGACAA
TCTCAACCTCGACCAGCTCCTCATCGACGACGCGCCCAAGCAAAAGCCTG
GCAAGATCAAGGACGGGAGCAGGGGGCGCGGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig836:12571..21352+

>mRNA_M-pyrifera_M_contig836.19528.1 ID=mRNA_M-pyrifera_M_contig836.19528.1|Name=mRNA_M-pyrifera_M_contig836.19528.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig836:12571..21352+ (Macrocystis pyrifera P11B4 male)
ATGAAGCTCGTGCGGTTCTTGATGAAGATGAACAATGAGACGGTCACCGT
CGAACTCAAGAATGGGACGACTGTTCACGGGACAGTGTCCTCCGTGGACG
TGAGCATGAACACTCACCTCAAGAACGTTAAGATGAAGCTCGTGCGGTTC
TTGATGAAGATGAACAATGAGACGGTCACCGTCGAACTCAAGAATGGGAC
GACTGTTCACGGGACAGTGTCCTCCGTGGACGTGAGCATGAACACTCACC
TCAAGAACGTTAAGGTTACCCCCAAGGGGAAGAACCCGACGACGTACGAC
AGCCTCTCCATCCGAGGCAACAATATCCGCTGCTACATTCTCCCTGACAA
TCTCAACCTCGACCAGCTCCTCATCGACGACGCGCCCAAGCAAAAGCCTG
GCAAGATCAAGGACGGGAGCAGGGGGCGCGGCGTTACCCCCAAGGGGAAG
AACCCGACGACGTACGACAGCCTCTCCATCCGAGGCAACAATATCCGCTG
CTACATTCTCCCTGACAATCTCAACCTCGACCAGCTCCTCATCGACGACG
CGCCCAAGCAAAAGCCTGGCAAGATCAAGGACGGGAGCAGGGGGCGCGGC
back to top