prot_M-pyrifera_M_contig836.19528.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig836.19528.1
Unique Nameprot_M-pyrifera_M_contig836.19528.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length100
Homology
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: A0A6H5JR04_9PHAE (Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR04_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 8.700e-64
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGSRGRG 100
            MKLVRFLMKMNNETVTVELKNGTTVHGTV+SVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGK+KDG+RGRG
Sbjct:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVASVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRG 100          
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: A0A835YYQ8_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ8_9STRA)

HSP 1 Score: 158 bits (400), Expect = 2.800e-48
Identity = 78/96 (81.25%), Postives = 86/96 (89.58%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGS 96
            MKLVRFLMK+NNETVT+ELKNGTTVHGTV+ VDV+MNTHLK VKVTPKG+N    D+LSIRGNNIRCYILPDN+NLDQLLIDDAPK KPG  K G+
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTTVHGTVAGVDVNMNTHLKGVKVTPKGRNTQDCDTLSIRGNNIRCYILPDNINLDQLLIDDAPKAKPGIPKAGA 96          
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: T0RK40_SAPDV (Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=T0RK40_SAPDV)

HSP 1 Score: 150 bits (378), Expect = 5.070e-45
Identity = 73/88 (82.95%), Postives = 81/88 (92.05%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK 88
            MKLVRFLMK++NETVT+ELKNGT VHGTV+ VD+SMNTHLK VK+T KGKNPT+ DSLSIRGNNIRCYILPD+LNLD LLIDD PKQK
Sbjct:    1 MKLVRFLMKLSNETVTIELKNGTVVHGTVTGVDISMNTHLKAVKMTVKGKNPTSLDSLSIRGNNIRCYILPDSLNLDTLLIDDTPKQK 88          
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: A0A7S2FU32_9STRA (Small nuclear ribonucleoprotein Sm D1 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU32_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.440e-44
Identity = 74/100 (74.00%), Postives = 85/100 (85.00%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGSRGRG 100
            MKLVRFLMK+NNETVT+ELKNGT V GTV+ VDV+MNT++KNVKVT KGKN   YD+LSIRGNNIR Y+LPD++NLD LLIDDAPKQK  K+  G RG G
Sbjct:   22 MKLVRFLMKLNNETVTIELKNGTVVQGTVAGVDVAMNTYMKNVKVTVKGKNTVNYDTLSIRGNNIRYYLLPDSINLDALLIDDAPKQKAPKVAAGGRGPG 121          
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: A0A024TLD1_9STRA (Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLD1_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.350e-43
Identity = 75/96 (78.12%), Postives = 84/96 (87.50%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGS 96
            MKLVRFLMK+ NETVT+ELKNGT VHGT+S VD+SMNTHLK VK+T KGKNPT+ DSLSIRGNNIR YILPD+LNLD LLIDD+PKQK   +K GS
Sbjct:    1 MKLVRFLMKLTNETVTIELKNGTVVHGTISGVDISMNTHLKVVKMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK---VKAGS 93          
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: A0A397E2M2_9STRA (Small nuclear ribonucleoprotein Sm D1 n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A397E2M2_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.500e-43
Identity = 75/96 (78.12%), Postives = 84/96 (87.50%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGS 96
            MKLVRFLMK+ NETVT+ELKNGT VHGT+S VD+SMNTHLK VK+T KGKNPT+ DSLSIRGNNIR YILPD+LNLD LLIDD+PKQK   +K GS
Sbjct:   32 MKLVRFLMKLTNETVTIELKNGTVVHGTISGVDISMNTHLKVVKMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK---VKAGS 124          
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: A0A7S2SJR6_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJR6_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.550e-43
Identity = 73/98 (74.49%), Postives = 82/98 (83.67%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGSRG 98
            MKLVRFLMK+N ETVT+ELKNGT V GTV+ VDV+MNT++KNVK+T KGKN   YDSLSIRGNNIR YILPDNLNLD LLIDD PK KP K++ G  G
Sbjct:   23 MKLVRFLMKLNKETVTIELKNGTVVQGTVAGVDVAMNTYMKNVKLTVKGKNTVHYDSLSIRGNNIRYYILPDNLNLDTLLIDDTPKAKPPKVQTGMSG 120          
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: W7T3T7_9STRA (Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T3T7_9STRA)

HSP 1 Score: 145 bits (366), Expect = 4.370e-43
Identity = 74/100 (74.00%), Postives = 85/100 (85.00%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGSRGRG 100
            MKLVRFLMK+NNETVT+ELKNGTT+ GT+S VDVSMNT+LKNVKVT KGKNP +Y+SLSIRGNNIR YILPD LNLD LL+DD PK K   +K G++  G
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNK---LKPGAQAGG 97          
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: A0A7S2V5U0_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5U0_9STRA)

HSP 1 Score: 144 bits (364), Expect = 6.280e-43
Identity = 74/100 (74.00%), Postives = 84/100 (84.00%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK--PGKIKDGSRG 98
            MKLVRFLMK+NNETVT+ELKNGT VHGTV+ VDVSMNT+L+NVK+T K KNP + ++LSIRGNNIR Y+LPDNLNLD LLIDD PKQK  PG    G RG
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTVVHGTVAGVDVSMNTYLRNVKMTVKQKNPVSLETLSIRGNNIRYYLLPDNLNLDTLLIDDTPKQKVRPGVAMRGGRG 100          
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Match: K3WSY3_GLOUD (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSY3_GLOUD)

HSP 1 Score: 144 bits (363), Expect = 1.860e-42
Identity = 73/102 (71.57%), Postives = 86/102 (84.31%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK--PGKIKDGSRGRG 100
            MKLVRFLMK++NETVT+ELKNGT VHGT++ VD+SMNTHLK+VK+T KGKNP + DSLSIRGNNIR YILPD+LNLD LLI+D P++K   G    G RGRG
Sbjct:    1 MKLVRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKSVKMTVKGKNPVSLDSLSIRGNNIRYYILPDSLNLDTLLIEDTPREKVKAGAPAAGGRGRG 102          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig836.19528.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR04_9PHAE8.700e-6497.00Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ecto... [more]
A0A835YYQ8_9STRA2.800e-4881.25Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Trib... [more]
T0RK40_SAPDV5.070e-4582.95Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Sapr... [more]
A0A7S2FU32_9STRA1.440e-4474.00Small nuclear ribonucleoprotein Sm D1 (Fragment) n... [more]
A0A024TLD1_9STRA1.350e-4378.13Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Apha... [more]
A0A397E2M2_9STRA3.500e-4378.13Small nuclear ribonucleoprotein Sm D1 n=6 Tax=Apha... [more]
A0A7S2SJR6_9STRA3.550e-4374.49Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhiz... [more]
W7T3T7_9STRA4.370e-4374.00Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Nann... [more]
A0A7S2V5U0_9STRA6.280e-4374.00Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Fibr... [more]
K3WSY3_GLOUD1.860e-4271.57Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Glob... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..70
e-value: 2.1E-16
score: 70.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..68
e-value: 6.4E-19
score: 67.4
NoneNo IPR availableGENE3D2.30.30.100coord: 1..85
e-value: 5.1E-36
score: 124.1
NoneNo IPR availablePANTHERPTHR23338:SF18SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1coord: 1..97
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..97
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig836contigM-pyrifera_M_contig836:12639..21352 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig836.19528.1mRNA_M-pyrifera_M_contig836.19528.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig836 12571..21352 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig836.19528.1 ID=prot_M-pyrifera_M_contig836.19528.1|Name=mRNA_M-pyrifera_M_contig836.19528.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGK
NPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKIKDGSRGRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR010920LSM_dom_sf